mRNA_M-pyrifera_M_contig785.18449.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig785.18449.1
Unique NamemRNA_M-pyrifera_M_contig785.18449.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig785.18449.1 vs. uniprot
Match: A0A6H5JUA1_9PHAE (MFS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUA1_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 4.600e-12
Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    1 KGWIIDAMEILVVAFVLEDVADTFGLNSVQKGLIGSASFF 120
             GW+IDAMEILVVAFVLED+A TF L SV KGLIGSASFF
Sbjct:   16 NGWVIDAMEILVVAFVLEDIATTFELGSVGKGLIGSASFF 55
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BLAST of mRNA_M-pyrifera_M_contig785.18449.1 vs. uniprot
Match: D7FV27_ECTSI (Major facilitator transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV27_ECTSI)

HSP 1 Score: 48.9 bits (115), Expect = 2.090e-5
Identity = 23/33 (69.70%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:   22 MEILVVAFVLEDVADTFGLNSVQKGLIGSASFF 120
            ME+LV+AF LE +A +F L+SV+KGLIGSASFF
Sbjct:    1 MEVLVLAFALEAIATSFELSSVEKGLIGSASFF 33
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig785.18449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JUA1_9PHAE4.600e-1282.50MFS domain-containing protein n=2 Tax=Ectocarpus T... [more]
D7FV27_ECTSI2.090e-569.70Major facilitator transporter n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig785contigM-pyrifera_M_contig785:10626..10760 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size114
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816687.3212857-UTR-M-pyrifera_M_contig785:10625..106461622816687.3212857-UTR-M-pyrifera_M_contig785:10625..10646Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig785 10626..10646 +
1692278119.871265-UTR-M-pyrifera_M_contig785:10625..106461692278119.871265-UTR-M-pyrifera_M_contig785:10625..10646Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig785 10626..10646 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816687.3350093-CDS-M-pyrifera_M_contig785:10646..107601622816687.3350093-CDS-M-pyrifera_M_contig785:10646..10760Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig785 10647..10760 +
1692278119.8822205-CDS-M-pyrifera_M_contig785:10646..107601692278119.8822205-CDS-M-pyrifera_M_contig785:10646..10760Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig785 10647..10760 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig785.18449.1prot_M-pyrifera_M_contig785.18449.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig785 10647..10760 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig785.18449.1

>prot_M-pyrifera_M_contig785.18449.1 ID=prot_M-pyrifera_M_contig785.18449.1|Name=mRNA_M-pyrifera_M_contig785.18449.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=38bp
MEILVVAFVLEDVADTFGLNSVQKGLIGSASFFVEPE*
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mRNA from alignment at M-pyrifera_M_contig785:10626..10760+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig785.18449.1 ID=mRNA_M-pyrifera_M_contig785.18449.1|Name=mRNA_M-pyrifera_M_contig785.18449.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=135bp|location=Sequence derived from alignment at M-pyrifera_M_contig785:10626..10760+ (Macrocystis pyrifera P11B4 male)
AAAGGCTGGATCATCGACGCTATGGAGATACTGGTTGTTGCCTTTGTGCT
TGAAGACGTGGCGGACACCTTTGGGCTAAATAGCGTTCAGAAGGGTCTCA
TCGGCAGCGCCAGTTTCTTCGTTGAGCCAGAGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig785:10626..10760+

>mRNA_M-pyrifera_M_contig785.18449.1 ID=mRNA_M-pyrifera_M_contig785.18449.1|Name=mRNA_M-pyrifera_M_contig785.18449.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig785:10626..10760+ (Macrocystis pyrifera P11B4 male)
ATGGAGATACTGGTTGTTGCCTTTGTGCTTGAAGACGTGGCGGACACCTT
TGGGCTAAATAGCGTTCAGAAGGGTCTCATCGGCAGCGCCAGTTTCTTCG
TTGAGCCAGAGTAGATGGAGATACTGGTTGTTGCCTTTGTGCTTGAAGAC
GTGGCGGACACCTTTGGGCTAAATAGCGTTCAGAAGGGTCTCATCGGCAG
CGCCAGTTTCTTCGTTGAGCCAGAGTAG
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