mRNA_M-pyrifera_M_contig7835.18420.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7835.18420.1
Unique NamemRNA_M-pyrifera_M_contig7835.18420.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig7835.18420.1 vs. uniprot
Match: D7FYT8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYT8_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 6.120e-58
Identity = 97/121 (80.17%), Postives = 109/121 (90.08%), Query Frame = 1
Query:   28 DGVRRATPLLLVLVCIELSDVIFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTILSSAVEDLVYLRPTVAVVLAFVGAKLGGEFFGYDVSIGASLGVITGLLGAGVGFSLLERQEKS 390
            DGVRRATPLLLVLVC+ELSD++FAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFT+L+SAVEDLVYLRP VAVVL FVG K+GG+FFGYDVS   SLG+ITG+L AGV  SL+   +K+
Sbjct:   75 DGVRRATPLLLVLVCVELSDIVFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTLLASAVEDLVYLRPAVAVVLGFVGCKIGGDFFGYDVSTELSLGIITGVLAAGVAASLILPGDKT 195          
BLAST of mRNA_M-pyrifera_M_contig7835.18420.1 vs. uniprot
Match: A0A6H5LB61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB61_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 2.410e-54
Identity = 96/121 (79.34%), Postives = 107/121 (88.43%), Query Frame = 1
Query:   28 DGVRRATPLLLVLVCIELSDVIFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTILSSAVEDLVYLRPTVAVVLAFVGAKLGGEFFGYDVSIGASLGVITGLLGAGVGFSLLERQEKS 390
            DGVRRATPLLLVLVC+ELSD++FAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFT+L+SAVEDLVYLRP VA VL FVG K+GGEFFGY+VS   SL +ITG+L AGV  SL+   EK+
Sbjct:  230 DGVRRATPLLLVLVCVELSDIVFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTLLASAVEDLVYLRPAVAAVLGFVGCKIGGEFFGYNVSTELSLEIITGVLAAGVAASLILPGEKT 350          
BLAST of mRNA_M-pyrifera_M_contig7835.18420.1 vs. uniprot
Match: A0A835YKR2_9STRA (Integral membrane protein TerC family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKR2_9STRA)

HSP 1 Score: 163 bits (413), Expect = 9.200e-47
Identity = 87/120 (72.50%), Postives = 102/120 (85.00%), Query Frame = 1
Query:   28 DGVRRATPLLLVLVCIELSDVIFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTILSSAVEDLVYLRPTVAVVLAFVGAKLGGEFFGYDVSIGASLGVITGLLGAGVGFSLLERQEK 387
            DGVRRATPLLLVLVC+ELSD++FAVDSIPAVF  T+DPF+VYTSNI+AI+NLRSL+T+LS+AV DL YLRP VA VLAFVGAKL  E+FGY+V    SLGVI+ LLG GV  SLL+  E+
Sbjct:  235 DGVRRATPLLLVLVCVELSDLVFAVDSIPAVFGCTRDPFLVYTSNIFAIVNLRSLYTVLSNAVGDLEYLRPAVAGVLAFVGAKLAAEYFGYEVDTLLSLGVISTLLGGGVALSLLKGDEE 354          
BLAST of mRNA_M-pyrifera_M_contig7835.18420.1 vs. uniprot
Match: A0A835YPV1_9STRA (Integral membrane protein TerC family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPV1_9STRA)

HSP 1 Score: 159 bits (401), Expect = 1.200e-45
Identity = 84/120 (70.00%), Postives = 99/120 (82.50%), Query Frame = 1
Query:   28 DGVRRATPLLLVLVCIELSDVIFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTILSSAVEDLVYLRPTVAVVLAFVGAKLGGEFFGYDVSIGASLGVITGLLGAGVGFSLLERQEK 387
            DG+RRATPLLLVLVC+E SD++FAVDSIPAVF VTKDP IVY+SNI+AILNLRSL+T+LS+AV DLVYLRP VA+VLAFVG KLG E+F   V    SLG+I+ +L  GVG SL ER+  
Sbjct:  167 DGMRRATPLLLVLVCVEASDLVFAVDSIPAVFGVTKDPLIVYSSNIFAILNLRSLYTVLSTAVGDLVYLRPAVALVLAFVGLKLGAEYFSVTVDTVLSLGIISTILAGGVGLSLYERRNS 286          
BLAST of mRNA_M-pyrifera_M_contig7835.18420.1 vs. uniprot
Match: A0A7S2V8N4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V8N4_9STRA)

HSP 1 Score: 159 bits (403), Expect = 3.740e-45
Identity = 79/121 (65.29%), Postives = 101/121 (83.47%), Query Frame = 1
Query:   28 DGVRRATPLLLVLVCIELSDVIFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTILSSAVEDLVYLRPTVAVVLAFVGAKLGGEFFGYDVSIGASLGVITGLLGAGVGFSLLERQEKS 390
            DGV+ ATPLLL LVC+ELSD++FAVDS+PAVF VTKDPFIVYTSNI+AIL LRSL+T+LS AV +L YL+P V +VL F+G+KLG E++GY++S G SLGV+  LLG GVG S+L +  ++
Sbjct:  254 DGVKVATPLLLCLVCVELSDIVFAVDSVPAVFGVTKDPFIVYTSNIFAILGLRSLYTVLSKAVSELDYLQPAVGIVLGFIGSKLGLEYYGYEISTGVSLGVVAALLGGGVGLSVLTKSFRA 374          
BLAST of mRNA_M-pyrifera_M_contig7835.18420.1 vs. uniprot
Match: A0A7S2FP03_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FP03_9STRA)

HSP 1 Score: 153 bits (387), Expect = 3.350e-44
Identity = 78/122 (63.93%), Postives = 102/122 (83.61%), Query Frame = 1
Query:   25 ADGVRRATPLLLVLVCIELSDVIFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTILSSAVEDLVYLRPTVAVVLAFVGAKLGGEFFGYDVSIGASLGVITGLLGAGVGFSLLERQEKS 390
            +DGVR+ATPLLL L+C+ELSD++FAVDS+PAVF VTKDPFIV+TSN++AI++LRSL+TI+S+AV DL YL+P V +VLAFVGAKLG  +F Y++S   SLGVI+ LL  G+  SL ER+  +
Sbjct:  119 SDGVRKATPLLLALICLELSDLVFAVDSVPAVFGVTKDPFIVFTSNLFAIVSLRSLYTIISNAVNDLKYLQPAVGLVLAFVGAKLGAGYFDYEISNLISLGVISTLLSGGIALSLYEREADA 240          
BLAST of mRNA_M-pyrifera_M_contig7835.18420.1 vs. uniprot
Match: A0A7S3Z2F4_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z2F4_9EUKA)

HSP 1 Score: 147 bits (372), Expect = 2.110e-41
Identity = 77/119 (64.71%), Postives = 94/119 (78.99%), Query Frame = 1
Query:   28 DGVRRATPLLLVLVCIELSDVIFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTILSSAVEDLVYLRPTVAVVLAFVGAKLGGEFFGYDVSIGASLGVITGLLGAGVGFSLLERQE 384
            DG + ATPL L LVCIE+SDV+FAVDS+PAVF VTKDP IV+TSN++AIL LRSL+T+LS+AV+DL YL+P VA++L FVGAKL  E+FG DV    SL VI  LLG G+G SL E+  
Sbjct:  165 DGRKVATPLFLALVCIEISDVLFAVDSVPAVFGVTKDPLIVFTSNMFAILGLRSLYTVLSTAVQDLKYLQPAVALILGFVGAKLVAEYFGMDVGTAESLAVILSLLGGGIGLSLYEKNN 283          
BLAST of mRNA_M-pyrifera_M_contig7835.18420.1 vs. uniprot
Match: W7U074_9STRA (Integral membrane protein TerC n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U074_9STRA)

HSP 1 Score: 150 bits (379), Expect = 2.380e-41
Identity = 78/117 (66.67%), Postives = 98/117 (83.76%), Query Frame = 1
Query:   37 RRATPLLLVLVCIELSDVIFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTILSSAVEDLVYLRPTVAVVLAFVGAKLGGEFFGYDVSIGASLGVITGLLGAGVGFSLLERQEK 387
            R ATPLLLVL+C+ELSDV+FAVDS+PAVF VTKDPFIVYTSNI+AIL LRSL+T+L++A+ DL YL+P VA++L  VG KLG E+FG++VS   SLGVIT LLG+GV  SL  + ++
Sbjct:  282 RVATPLLLVLICVELSDVVFAVDSVPAVFGVTKDPFIVYTSNIFAILGLRSLYTVLANAMVDLPYLKPAVALILGLVGLKLGAEYFGFEVSNAVSLGVITSLLGSGVWASLYLKPDR 398          
BLAST of mRNA_M-pyrifera_M_contig7835.18420.1 vs. uniprot
Match: A0A7S1E5C0_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1E5C0_HEMAN)

HSP 1 Score: 139 bits (350), Expect = 1.620e-39
Identity = 71/120 (59.17%), Postives = 96/120 (80.00%), Query Frame = 1
Query:   28 DGVRRATPLLLVLVCIELSDVIFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTILSSAVEDLVYLRPTVAVVLAFVGAKLGGEFFGYDVSIGASLGVITGLLGAGVGFSLLERQEK 387
            DGV+RATPLLLV+VCIELSD++FAVDSIPA+F VT+DPFI++TSNI+AIL LR+LF +++  +E L YL   VA+VL FVG K+  EF G ++S  A+LGV+  +LGAGV  SL++  ++
Sbjct:   43 DGVKRATPLLLVVVCIELSDILFAVDSIPAIFGVTEDPFIIFTSNIFAILGLRALFQVVAKLMESLEYLEKAVAIVLGFVGVKMMAEFGGIEISEEAALGVVVSVLGAGVAASLVKNGQE 162          
BLAST of mRNA_M-pyrifera_M_contig7835.18420.1 vs. uniprot
Match: A0A7S0W8F8_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W8F8_9CRYP)

HSP 1 Score: 141 bits (356), Expect = 1.910e-39
Identity = 72/122 (59.02%), Postives = 97/122 (79.51%), Query Frame = 1
Query:   28 DGVRRATPLLLVLVCIELSDVIFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTILSSAVEDLVYLRPTVAVVLAFVGAKLGGEFFGYDVSIGASLGVITGLLGAGVGFSLLERQEKSA 393
            DGVRRATPLLLV+VC+ELSDV+FAVDSIPA+F VT+DPFI++TSNI+AIL LR+LF +++  +E+L YL   VA+VL FVG K+  EF G ++S  A+L V+  +LGAGV  SL++  ++ A
Sbjct:  127 DGVRRATPLLLVVVCVELSDVLFAVDSIPAIFGVTEDPFIIFTSNIFAILGLRALFQVVAKLMENLAYLEQAVAIVLGFVGVKMMAEFGGVEISEEAALAVVVSVLGAGVAASLVKNSQEGA 248          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7835.18420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYT8_ECTSI6.120e-5880.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LB61_9PHAE2.410e-5479.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YKR2_9STRA9.200e-4772.50Integral membrane protein TerC family-domain-conta... [more]
A0A835YPV1_9STRA1.200e-4570.00Integral membrane protein TerC family-domain-conta... [more]
A0A7S2V8N4_9STRA3.740e-4565.29Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2FP03_9STRA3.350e-4463.93Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3Z2F4_9EUKA2.110e-4164.71Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
W7U074_9STRA2.380e-4166.67Integral membrane protein TerC n=3 Tax=Monodopsida... [more]
A0A7S1E5C0_HEMAN1.620e-3959.17Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S0W8F8_9CRYP1.910e-3959.02Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7835contigM-pyrifera_M_contig7835:8418..9316 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score189.1
Seed ortholog evalue1.3e-45
Seed eggNOG ortholog2880.D7FYT8
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.membrane protein TERC
EggNOG OGs2QQNF@2759,COG0861@1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size396
Cds size396
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816685.7171776-CDS-M-pyrifera_M_contig7835:8417..86781622816685.7171776-CDS-M-pyrifera_M_contig7835:8417..8678Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7835 8418..8678 -
1692278118.989649-CDS-M-pyrifera_M_contig7835:8417..86781692278118.989649-CDS-M-pyrifera_M_contig7835:8417..8678Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7835 8418..8678 -
1622816685.7300994-CDS-M-pyrifera_M_contig7835:9181..93161622816685.7300994-CDS-M-pyrifera_M_contig7835:9181..9316Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7835 9182..9316 -
1692278119.0027733-CDS-M-pyrifera_M_contig7835:9181..93161692278119.0027733-CDS-M-pyrifera_M_contig7835:9181..9316Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7835 9182..9316 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7835.18420.1prot_M-pyrifera_M_contig7835.18420.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7835 8418..9316 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7835.18420.1

>prot_M-pyrifera_M_contig7835.18420.1 ID=prot_M-pyrifera_M_contig7835.18420.1|Name=mRNA_M-pyrifera_M_contig7835.18420.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
MVSHCLEQADGVRRATPLLLVLVCIELSDVIFAVDSIPAVFAVTKDPFIV
YTSNIWAILNLRSLFTILSSAVEDLVYLRPTVAVVLAFVGAKLGGEFFGY
DVSIGASLGVITGLLGAGVGFSLLERQEKSA*
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mRNA from alignment at M-pyrifera_M_contig7835:8418..9316-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7835.18420.1 ID=mRNA_M-pyrifera_M_contig7835.18420.1|Name=mRNA_M-pyrifera_M_contig7835.18420.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=899bp|location=Sequence derived from alignment at M-pyrifera_M_contig7835:8418..9316- (Macrocystis pyrifera P11B4 male)
ATGGTCTCCCATTGTCTGGAACAGGCTGATGGTGTCCGCCGTGCTACCCC CCTTCTACTTGTTCTGGTTTGCATCGAACTGAGCGACGTCATCTTCGCTG TCGATTCGATTCCTGCAGTGTTTGCCGTCACCAAGGTAATGGTGGCATTC CCACCACCACCCCCCCGAGTAACCACGATGTTTTCTTGTCTACCAATGGT ACATGCTCTTGTGCGCGATTTGTAATCCTCATCGACCCCCCTTTTCCTGC TTTTGCATGTATGTAACTTACGCACGGATTTCACGGTTCATCACAGTTGA CCGCACAGTCATGTAGTTCGGCCGCGCGCAGTTTTACGCCCTCGATAGGA ATCGATTTTTGATGTAAATATCCCTATATACGTACCCGGTACTCGTGTTG AGTGTTGGGATGACAATCACGTTTGGCAGCCAGCGCACGGTTGCTCAAGC CCCATCGCGGTCAAGGCTTACACAGTATTCGAGTTTCGGACTTCATGATG ACATAGGCGAAGGGTTTGCCGCAGCATGCTGATGTTTCTCTCCTCGGTAC TTCGACCGCTTGCCCGCGTTGCAAATTCACTTGCAAATCCTCAAGATTGG CGTCCAATATTGGTGTTTGCATAACGTGTTACCGTCAGGACCCTTTTATA GTCTACACGTCCAACATATGGGCGATCCTCAACCTGAGGAGCTTGTTCAC GATACTTTCGAGTGCTGTCGAAGACCTGGTCTACCTACGACCAACGGTGG CTGTTGTGTTGGCCTTTGTGGGCGCGAAACTCGGGGGCGAGTTTTTCGGG TATGATGTGTCGATTGGGGCGTCTTTGGGTGTAATTACGGGCTTGCTAGG AGCCGGGGTAGGCTTCAGCTTGCTCGAGCGCCAAGAGAAGTCGGCGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7835:8418..9316-

>mRNA_M-pyrifera_M_contig7835.18420.1 ID=mRNA_M-pyrifera_M_contig7835.18420.1|Name=mRNA_M-pyrifera_M_contig7835.18420.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig7835:8418..9316- (Macrocystis pyrifera P11B4 male)
ATGGTCTCCCATTGTCTGGAACAGGCTGATGGTGTCCGCCGTGCTACCCC
CCTTCTACTTGTTCTGGTTTGCATCGAACTGAGCGACGTCATCTTCGCTG
TCGATTCGATTCCTGCAGTGTTTGCCGTCACCAAGATGGTCTCCCATTGT
CTGGAACAGGCTGATGGTGTCCGCCGTGCTACCCCCCTTCTACTTGTTCT
GGTTTGCATCGAACTGAGCGACGTCATCTTCGCTGTCGATTCGATTCCTG
CAGTGTTTGCCGTCACCAAGGACCCTTTTATAGTCTACACGTCCAACATA
TGGGCGATCCTCAACCTGAGGAGCTTGTTCACGATACTTTCGAGTGCTGT
CGAAGACCTGGTCTACCTACGACCAACGGTGGCTGTTGTGTTGGCCTTTG
TGGGCGCGAAACTCGGGGGCGAGTTTTTCGGGTATGATGTGTCGATTGGG
GCGTCTTTGGGTGTAATTACGGGCTTGCTAGGAGCCGGGGTAGGCTTCAG
CTTGCTCGAGCGCCAAGAGAAGTCGGCGTAGGACCCTTTTATAGTCTACA
CGTCCAACATATGGGCGATCCTCAACCTGAGGAGCTTGTTCACGATACTT
TCGAGTGCTGTCGAAGACCTGGTCTACCTACGACCAACGGTGGCTGTTGT
GTTGGCCTTTGTGGGCGCGAAACTCGGGGGCGAGTTTTTCGGGTATGATG
TGTCGATTGGGGCGTCTTTGGGTGTAATTACGGGCTTGCTAGGAGCCGGG
GTAGGCTTCAGCTTGCTCGAGCGCCAAGAGAAGTCGGCGTAG
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