mRNA_M-pyrifera_M_contig7741.18223.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7741.18223.1
Unique NamemRNA_M-pyrifera_M_contig7741.18223.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig7741.18223.1 vs. uniprot
Match: D7FQB6_ECTSI (Ribosomal_S17_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB6_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 6.350e-54
Identity = 86/89 (96.63%), Postives = 89/89 (100.00%), Query Frame = 3
Query:    3 GLVISAGKMTNTIVIRRDYLHYISKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHDPCINTAVSVRKQFRMF 269
            GLVISAGKMTNTIVIRRDYLH++SKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEH+PCINTAVSVRKQFRMF
Sbjct:  103 GLVISAGKMTNTIVIRRDYLHFVSKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEPCINTAVSVRKQFRMF 191          
BLAST of mRNA_M-pyrifera_M_contig7741.18223.1 vs. uniprot
Match: A0A835Z9X9_9STRA (Ribosomal protein S17-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9X9_9STRA)

HSP 1 Score: 159 bits (403), Expect = 1.970e-44
Identity = 70/89 (78.65%), Postives = 83/89 (93.26%), Query Frame = 3
Query:    3 GLVISAGKMTNTIVIRRDYLHYISKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHDPCINTAVSVRKQFRMF 269
            GLV+SAGKM NT VIRRDYLHY++KYRRFEKRHKN+ VH +PC+ NVKEGDI+T+GQCRPLSKT+RFN LEH+PCINT++SV+KQFRMF
Sbjct:   76 GLVLSAGKMKNTCVIRRDYLHYVTKYRRFEKRHKNLMVHLSPCFPNVKEGDILTVGQCRPLSKTIRFNALEHEPCINTSISVKKQFRMF 164          
BLAST of mRNA_M-pyrifera_M_contig7741.18223.1 vs. uniprot
Match: A0A7S2XWS0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWS0_9STRA)

HSP 1 Score: 147 bits (371), Expect = 1.150e-39
Identity = 69/89 (77.53%), Postives = 79/89 (88.76%), Query Frame = 3
Query:    3 GLVISAGKMTNTIVIRRDYLHYISKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHDPCINTAVSVRKQFRMF 269
            GLVIS  KM NTI++RRDYLHYISKYRRFEKRHKNM VH +PC+  +KEGD+VTIGQCRPLSKTVRFNVLEH P +N A++V+KQFRMF
Sbjct:   78 GLVIST-KMKNTIIVRRDYLHYISKYRRFEKRHKNMAVHASPCFDTIKEGDVVTIGQCRPLSKTVRFNVLEHLPSVNQALNVKKQFRMF 165          
BLAST of mRNA_M-pyrifera_M_contig7741.18223.1 vs. uniprot
Match: A0A7S4WCA2_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4WCA2_9DINO)

HSP 1 Score: 141 bits (355), Expect = 2.690e-37
Identity = 65/89 (73.03%), Postives = 77/89 (86.52%), Query Frame = 3
Query:    3 GLVISAGKMTNTIVIRRDYLHYISKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHDPCINTAVSVRKQFRMF 269
            GLVIS  KMT TI++RRDYLHYI KYRR+EKRHKN+ VHC+P +  V EGD+VTIGQCRPLSKTVRFNV+EH P +N A++V+KQFRMF
Sbjct:   78 GLVIST-KMTRTIIVRRDYLHYIRKYRRYEKRHKNVAVHCSPAFDTVSEGDVVTIGQCRPLSKTVRFNVIEHLPTVNKAINVKKQFRMF 165          
BLAST of mRNA_M-pyrifera_M_contig7741.18223.1 vs. uniprot
Match: A0A7R9U3I9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3I9_9STRA)

HSP 1 Score: 141 bits (356), Expect = 3.570e-37
Identity = 62/89 (69.66%), Postives = 79/89 (88.76%), Query Frame = 3
Query:    3 GLVISAGKMTNTIVIRRDYLHYISKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHDPCINTAVSVRKQFRMF 269
            G+VIS  KMT T+V+RRDYLH++ KY+R+EKRHKNMTVHC+P + NVK GD+VT+GQCRPLSKT+RFNVL H+P +N +VSV+KQFR+F
Sbjct:   99 GIVIS-NKMTRTVVVRRDYLHFVRKYKRYEKRHKNMTVHCSPAFTNVKPGDVVTVGQCRPLSKTIRFNVLVHEPAVNQSVSVKKQFRVF 186          
BLAST of mRNA_M-pyrifera_M_contig7741.18223.1 vs. uniprot
Match: F0XZW5_AURAN (Ribosomal_S17_N domain-containing protein n=3 Tax=Pelagomonadales TaxID=54409 RepID=F0XZW5_AURAN)

HSP 1 Score: 137 bits (345), Expect = 8.570e-36
Identity = 62/89 (69.66%), Postives = 79/89 (88.76%), Query Frame = 3
Query:    3 GLVISAGKMTNTIVIRRDYLHYISKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHDPCINTAVSVRKQFRMF 269
            G+VIS  KM  T+VIRRDYL++  KYRRFEKRHKNM+VHC+PC++NVKEGDIVT+GQCRPL+KTVRFNVL H+P +N +++V+K FR+F
Sbjct:   80 GMVIST-KMKRTLVIRRDYLNWCGKYRRFEKRHKNMSVHCSPCFENVKEGDIVTVGQCRPLTKTVRFNVLTHEPAVNQSLNVKKVFRVF 167          
BLAST of mRNA_M-pyrifera_M_contig7741.18223.1 vs. uniprot
Match: A0A4D9CZU0_9STRA (Ribosomal_S17_N domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZU0_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.120e-35
Identity = 61/89 (68.54%), Postives = 77/89 (86.52%), Query Frame = 3
Query:    3 GLVISAGKMTNTIVIRRDYLHYISKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHDPCINTAVSVRKQFRMF 269
            G+V+S  KM  T++IRRDYLH++SKY RFEKRHKN+  HC+P +  VKEGDIVT+GQCRPLSKTVRFNVL+H+P IN A+S++KQFR+F
Sbjct:   89 GIVLST-KMNRTVIIRRDYLHWVSKYSRFEKRHKNLAAHCSPAFPQVKEGDIVTVGQCRPLSKTVRFNVLQHEPSINQALSIKKQFRVF 176          
BLAST of mRNA_M-pyrifera_M_contig7741.18223.1 vs. uniprot
Match: A0A812UUF3_SYMMI (RPS11 protein n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UUF3_SYMMI)

HSP 1 Score: 135 bits (340), Expect = 1.500e-35
Identity = 60/89 (67.42%), Postives = 77/89 (86.52%), Query Frame = 3
Query:    3 GLVISAGKMTNTIVIRRDYLHYISKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHDPCINTAVSVRKQFRMF 269
            G+V+S  KM  T+VIRRDYL Y+ KYRRFEKRH NM+VHC+PC+QNV EGD+VT+GQCRPL+KTV+FNVLEH P +N +++V+K FR+F
Sbjct:   42 GIVVST-KMKRTVVIRRDYLQYVRKYRRFEKRHANMSVHCSPCFQNVCEGDVVTVGQCRPLAKTVKFNVLEHQPAVNKSLNVKKIFRVF 129          
BLAST of mRNA_M-pyrifera_M_contig7741.18223.1 vs. uniprot
Match: A0A7S1XVW4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVW4_9STRA)

HSP 1 Score: 135 bits (341), Expect = 3.240e-35
Identity = 60/89 (67.42%), Postives = 77/89 (86.52%), Query Frame = 3
Query:    3 GLVISAGKMTNTIVIRRDYLHYISKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHDPCINTAVSVRKQFRMF 269
            G+VIS  KM  TIV+RRDYLH++ KY+R+EKRHKN+T HC+PC+ NVK GD+VTIGQCRPL+KT+RFNVL H+P  N +V+V+KQFR+F
Sbjct:   79 GVVIS-NKMKRTIVVRRDYLHFVRKYKRYEKRHKNVTAHCSPCFVNVKPGDVVTIGQCRPLAKTIRFNVLTHEPSTNQSVNVKKQFRVF 166          
BLAST of mRNA_M-pyrifera_M_contig7741.18223.1 vs. uniprot
Match: A0A7S1UA06_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UA06_9STRA)

HSP 1 Score: 135 bits (341), Expect = 5.380e-34
Identity = 60/89 (67.42%), Postives = 77/89 (86.52%), Query Frame = 3
Query:    3 GLVISAGKMTNTIVIRRDYLHYISKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHDPCINTAVSVRKQFRMF 269
            G+VIS  KM  TIV+RRDYLH++ KY+R+EKRHKN+T HC+PC+ NVK GD+VTIGQCRPL+KT+RFNVL H+P  N +V+V+KQFR+F
Sbjct:  182 GVVIS-NKMKRTIVVRRDYLHFVRKYKRYEKRHKNVTAHCSPCFVNVKPGDVVTIGQCRPLAKTIRFNVLTHEPSTNQSVNVKKQFRVF 269          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7741.18223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQB6_ECTSI6.350e-5496.63Ribosomal_S17_N domain-containing protein n=1 Tax=... [more]
A0A835Z9X9_9STRA1.970e-4478.65Ribosomal protein S17-domain-containing protein n=... [more]
A0A7S2XWS0_9STRA1.150e-3977.53Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4WCA2_9DINO2.690e-3773.03Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A7R9U3I9_9STRA3.570e-3769.66Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
F0XZW5_AURAN8.570e-3669.66Ribosomal_S17_N domain-containing protein n=3 Tax=... [more]
A0A4D9CZU0_9STRA1.120e-3568.54Ribosomal_S17_N domain-containing protein n=3 Tax=... [more]
A0A812UUF3_SYMMI1.500e-3567.42RPS11 protein n=2 Tax=Symbiodinium microadriaticum... [more]
A0A7S1XVW4_9STRA3.240e-3567.42Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1UA06_9STRA5.380e-3467.42Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7741contigM-pyrifera_M_contig7741:737..3342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.6
Seed ortholog evalue7.8e-41
Seed eggNOG ortholog2880.D7FQB6
Preferred nameRPS11
KEGG koko:K02949
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0186@1,KOG1728@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons3
Model size1081
Cds size246
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7741.18223.1prot_M-pyrifera_M_contig7741.18223.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7741 763..2533 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816674.7942934-UTR-M-pyrifera_M_contig7741:736..7621622816674.7942934-UTR-M-pyrifera_M_contig7741:736..762Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7741 737..762 +
1692278112.4151995-UTR-M-pyrifera_M_contig7741:736..7621692278112.4151995-UTR-M-pyrifera_M_contig7741:736..762Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7741 737..762 +
1622816674.8597333-UTR-M-pyrifera_M_contig7741:2533..33421622816674.8597333-UTR-M-pyrifera_M_contig7741:2533..3342Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7741 2534..3342 +
1692278112.4654016-UTR-M-pyrifera_M_contig7741:2533..33421692278112.4654016-UTR-M-pyrifera_M_contig7741:2533..3342Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7741 2534..3342 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816674.8097312-CDS-M-pyrifera_M_contig7741:762..8211622816674.8097312-CDS-M-pyrifera_M_contig7741:762..821Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7741 763..821 +
1692278112.4264455-CDS-M-pyrifera_M_contig7741:762..8211692278112.4264455-CDS-M-pyrifera_M_contig7741:762..821Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7741 763..821 +
1622816674.8256369-CDS-M-pyrifera_M_contig7741:1703..18541622816674.8256369-CDS-M-pyrifera_M_contig7741:1703..1854Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7741 1704..1854 +
1692278112.441081-CDS-M-pyrifera_M_contig7741:1703..18541692278112.441081-CDS-M-pyrifera_M_contig7741:1703..1854Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7741 1704..1854 +
1622816674.8423097-CDS-M-pyrifera_M_contig7741:2497..25331622816674.8423097-CDS-M-pyrifera_M_contig7741:2497..2533Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7741 2498..2533 +
1692278112.4540153-CDS-M-pyrifera_M_contig7741:2497..25331692278112.4540153-CDS-M-pyrifera_M_contig7741:2497..2533Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7741 2498..2533 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7741.18223.1

>prot_M-pyrifera_M_contig7741.18223.1 ID=prot_M-pyrifera_M_contig7741.18223.1|Name=mRNA_M-pyrifera_M_contig7741.18223.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=82bp
MTNTIVIRRDYLHYISKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQC
RPLSKTVRFNVLEHDPCINTAVSVRKQFRMF*
back to top

mRNA from alignment at M-pyrifera_M_contig7741:737..3342+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7741.18223.1 ID=mRNA_M-pyrifera_M_contig7741.18223.1|Name=mRNA_M-pyrifera_M_contig7741.18223.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2606bp|location=Sequence derived from alignment at M-pyrifera_M_contig7741:737..3342+ (Macrocystis pyrifera P11B4 male)
AGGGTCTTGTCATCTCCGCCGGCAAGATGACCAACACCATCGTCATCCGC CGTGACTACCTGCACTACATCTCCAAGTACCGCCGGTGAGAACTGAACTA CATCACGTACACCAACAGCGCGCGTAGAGGAGGGGTAAATACAAGAAGAG CCCCGCGCCGTTTGTTCACGTACGTACAGAGCAGGTGCCGCGTTGCGCTT TGCCTTATTGGTGAAGTTGGGCTGCTGGTCTGCCTGTCCGAGAACGCGTC TTTCCTACCGTGTCGTATCCTCTATTCCCGGTGTTGTAGAATAAATGTTG ATGCGTGAGGCCACGGCCTTTTTACTGGTCACGCTGCCCACAAAGTGGAG CGGGGTTTCTCGTAAATTTTGCCTTTCCTTTCGGACTCGAGAGGGAGAAT TGTCGAGAAATGATTACGGTTGATGACAGCACCGGCCACACGAAGTAGAG CCCGATTTGCTGGGGCGAATGATGTGTCCGAGCTGCAAGTAAGGAGCGGT ACAACATGCATGCAGGATGGTGGTATATGCTCACATTGCTGCGCGCTCTT CCTAGATGGTTGATTCGACCGCGGTAGTCGCTCTTTTCGTTAGGTTGCTG TGCATGGGTCACAAACCGGCCATTAAGGGCGAAAGCCTGGTTCGGGCAAC AACAACCAGCGGACGCGCATCCGTCCTCCGATTCTGACAGCCCCACCGGT AAAATCGTGTTGTTTGCGGTCTACGGAGGTGTTCTTGTTTCATGTTTCAG TTCGGATCGATTCGGTTCATGACTTGTCAAGCCACATCCTTTTCGGGTCG ATGTTGTAACGCGTTCCTATCCGTCCTTCCCTCTGCGAGGTCTGGACATT TCTTGCTCGATGTGCCCCTTTCCCTCCAAAGACGCCTCTCTACTCGCTGT CGTTGTATTTTTCACTCCACTCTTCTTCGTTTGACGTCTGCGCTTTGTGT GCATTCTTGAACCGAAGGTTCGAGAAGCGCCACAAGAACATGACGGTGCA CTGCGCGCCCTGCTGGCAGAACGTGAAGGAGGGAGACATCGTCACCATCG GACAGTGCCGGCCTCTATCGAAGACGGTGCGCTTCAACGTCCTCGAGCAC GACCCGTGCATCAACACGGTGAGGGGAAATTATTTTGCAACTGCTACACC ATTTCCTAATGCTGCATGTATACCTAATAGTAGTATAAAATACGCGCGAT CGAAGTATCGCACCAAAAGCTTGAACAAGATGAGTTTGGAAGAAATTTTA TTATGTAAGACCGACGGCAATAGGAAGGCAAAGTTTTCATAAAAAGTCGA GAATATGAAAGATACCAGCGTCAAAGATTCAGTACCGTTTGCTGTAAGTA CGATTATTCGAAAAAAAGTTCCAAACTTCGGAAAAAGACCGATAAAAATA ATTATGGGGCAAAAATCGTCTTGGAAAAAAAAACAGCAGAATGTTTAGTG ACAGACATCAACCAACGAAACAAACGACTGCGTCATGAACTCTGAACGAG GCGCGCTCGTTATAGGGGCTTCAAACCACCCTAGGGTCACTTTTTTTTTC ACAATGGCCGGTGATATGTGGCGGCCGCTGGCCAGGCGTACGTATCACTA AAACAAAACGTTTAACCGCTGGTGTGCAGAAAACAGATTGTTTGTTGTCG GCGCTATATGTTGAGTGCTCAAATTGGAATGGCTGCTTTATTAAAACACC TGTTGGCTAAAATTGCTCTTTTGCATCCCTCGTATCCTCGCCCGGCGTTC CATCCTCGCAGGCGGTGTCGGTGCGCAAGCAGTTCCGTATGTTCTGAGCC AACCGCTTTCGAGAGGTTTTATGAGTCGAAGCCGCATGCACGGGAGGGGG AGAGGGGATTCATAGCCGGGCCGAGTGCAGCAAGCCTTGCCTTGTTTTCA GGGTTTCCTGGCAGCAACTCGCGAGGTCGCAGTCGCGGCTGCCCTGTTGG AGTTGCGCATTGTCGCCGCTTGCTGATTGGCTAACATCTGTTTCCGTCCT TCGGCGGTTACTTTTCTGGTCGTGGAGGCACGGGGGAGACCACATAATAA GAACATGACTGCCCTGTCAAAACTTGATGTTCCCGACATTGATTTACGTG ATACCCCCCAGCAAAGAGTTACGAGTCGTGCGCGTGCTGTGTGCGTCGTC CCCCCTCACGTTGACATCGCTTTCGGTCGATGGTCCTTGATGCCCACGTC CTCAACCAAACGCACATCATGTTTTTGAAGCAGGCATCAGAGCGGCTACT TCGTACTCTACAGTAACGGCAGTCACAATTATGCCTCGCGACGAAAAAAA CGTTTTGCAACGCACGCAGTAAAAAGTATGGTCATACGCGATATATACGA GTACCAAAGTCAGTGGCAACATACACAACCTGGTTGATGGCGATCTTTAC ACCCTGCTATTGTTGAAAGATGGTGTGCTACCCAACAGTCGTGGCGGAAA CATGAGTGCTGTTGAGGAGCATCTTCTCGAATTCAACGATCATCGCGCTG TTCTTGAATCGATGTCAAAAACCCGTCCGTCGCACTGCGATCCATTCACA GCAAGCAGTGCTGTCGCTGTCGACGGTGACAACATAAATGAAACTGGGAA CCCTGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig7741:737..3342+

>mRNA_M-pyrifera_M_contig7741.18223.1 ID=mRNA_M-pyrifera_M_contig7741.18223.1|Name=mRNA_M-pyrifera_M_contig7741.18223.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig7741:737..3342+ (Macrocystis pyrifera P11B4 male)
ATGACCAACACCATCGTCATCCGCCGTGACTACCTGCACTACATCTCCAA
GTACCGCCGATGACCAACACCATCGTCATCCGCCGTGACTACCTGCACTA
CATCTCCAAGTACCGCCGGTTCGAGAAGCGCCACAAGAACATGACGGTGC
ACTGCGCGCCCTGCTGGCAGAACGTGAAGGAGGGAGACATCGTCACCATC
GGACAGTGCCGGCCTCTATCGAAGACGGTGCGCTTCAACGTCCTCGAGCA
CGACCCGTGCATCAACACGGTTCGAGAAGCGCCACAAGAACATGACGGTG
CACTGCGCGCCCTGCTGGCAGAACGTGAAGGAGGGAGACATCGTCACCAT
CGGACAGTGCCGGCCTCTATCGAAGACGGTGCGCTTCAACGTCCTCGAGC
ACGACCCGTGCATCAACACGGCGGTGTCGGTGCGCAAGCAGTTCCGTATG
TTCTGAGCGGTGTCGGTGCGCAAGCAGTTCCGTATGTTCTGA
back to top