mRNA_M-pyrifera_M_contig76119.17956.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76119.17956.1
Unique NamemRNA_M-pyrifera_M_contig76119.17956.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig76119.17956.1 vs. uniprot
Match: A0A2V0NLE0_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NLE0_9CHLO)

HSP 1 Score: 60.8 bits (146), Expect = 3.550e-8
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:   25 VMDVKFHPDGSIVAGCMADGTVKLWDARCDALLQHYAAHSSA 150
            +  V FHPDG+ +A C AD ++K+WD R DALLQHY AH+ A
Sbjct:  201 ISSVAFHPDGTALASCCADASIKIWDMRSDALLQHYRAHTGA 242
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BLAST of mRNA_M-pyrifera_M_contig76119.17956.1 vs. uniprot
Match: A0A8J2F7Q1_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J2F7Q1_9DINO)

HSP 1 Score: 52.0 bits (123), Expect = 4.460e-5
Identity = 23/48 (47.92%), Postives = 29/48 (60.42%), Query Frame = 1 
Query:   22 RVMDVKFHPDGSIVAGCMADGTVKLWDARCDALLQHYAAHSSAAHHID 165
            RV    FHPDG+ +A C  D T+K+WD R   L+QHY AH  A   +D
Sbjct:  232 RVNRSIFHPDGTCIASCSDDRTIKIWDLRRRRLIQHYDAHGGAVLDLD 279
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76119.17956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V0NLE0_9CHLO3.550e-857.14Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
A0A8J2F7Q1_9DINO4.460e-547.92Hypothetical protein n=1 Tax=Amoebophrya sp. A25 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76119contigM-pyrifera_M_contig76119:51..452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size402
Cds size375
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816660.5817962-UTR-M-pyrifera_M_contig76119:50..771622816660.5817962-UTR-M-pyrifera_M_contig76119:50..77Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig76119 51..77 +
1692278104.2825625-UTR-M-pyrifera_M_contig76119:50..771692278104.2825625-UTR-M-pyrifera_M_contig76119:50..77Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig76119 51..77 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816660.5976012-CDS-M-pyrifera_M_contig76119:77..4521622816660.5976012-CDS-M-pyrifera_M_contig76119:77..452Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76119 78..452 +
1692278104.291846-CDS-M-pyrifera_M_contig76119:77..4521692278104.291846-CDS-M-pyrifera_M_contig76119:77..452Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76119 78..452 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76119.17956.1prot_M-pyrifera_M_contig76119.17956.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76119 78..452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76119.17956.1

>prot_M-pyrifera_M_contig76119.17956.1 ID=prot_M-pyrifera_M_contig76119.17956.1|Name=mRNA_M-pyrifera_M_contig76119.17956.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=125bp
MDVKFHPDGSIVAGCMADGTVKLWDARCDALLQHYAAHSSAAHHIDFHPS
GDFLVSSGQDAAVRIWDLRAGTPLFTLRGHEGAVRGASFSKDGRHFATGG
AVDGVVMVWQADLAAAHSSKTTSPR
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mRNA from alignment at M-pyrifera_M_contig76119:51..452+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76119.17956.1 ID=mRNA_M-pyrifera_M_contig76119.17956.1|Name=mRNA_M-pyrifera_M_contig76119.17956.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig76119:51..452+ (Macrocystis pyrifera P11B4 male)
TCTCCTCCTTTTCTTTGCAGTCGCGTGATGGACGTGAAGTTCCACCCTGA
CGGGTCGATCGTGGCGGGGTGCATGGCGGATGGGACTGTGAAGCTGTGGG
ATGCGCGCTGTGACGCCTTGCTGCAGCACTATGCCGCGCATTCTAGCGCC
GCGCACCACATTGACTTCCACCCTAGCGGAGATTTCCTCGTGTCTTCTGG
CCAAGATGCAGCAGTGAGAATTTGGGATCTTCGAGCTGGCACTCCGCTGT
TTACGTTACGAGGACACGAAGGAGCGGTGAGAGGAGCGTCTTTCAGCAAG
GATGGACGCCACTTTGCCACGGGAGGAGCTGTGGATGGAGTTGTCATGGT
ATGGCAAGCTGACCTCGCTGCAGCCCACTCCTCCAAAACCACATCCCCAA
GA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76119:51..452+

>mRNA_M-pyrifera_M_contig76119.17956.1 ID=mRNA_M-pyrifera_M_contig76119.17956.1|Name=mRNA_M-pyrifera_M_contig76119.17956.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig76119:51..452+ (Macrocystis pyrifera P11B4 male)
ATGGACGTGAAGTTCCACCCTGACGGGTCGATCGTGGCGGGGTGCATGGC
GGATGGGACTGTGAAGCTGTGGGATGCGCGCTGTGACGCCTTGCTGCAGC
ACTATGCCGCGCATTCTAGCGCCGCGCACCACATTGACTTCCACCCTAGC
GGAGATTTCCTCGTGTCTTCTGGCCAAGATGCAGCAGTGAGAATTTGGGA
TCTTCGAGCTGGCACTCCGCTGTTTACGTTACGAGGACACGAAGGAGCGG
TGAGAGGAGCGTCTTTCAGCAAGGATGGACGCCACTTTGCCACGGGAGGA
GCTGTGGATGGAGTTGTCATGGTATGGCAAGCTGACCTCGCTGCAGCCCA
CTCCTCCAAAACCACATCCCCAAGAATGGACGTGAAGTTCCACCCTGACG
GGTCGATCGTGGCGGGGTGCATGGCGGATGGGACTGTGAAGCTGTGGGAT
GCGCGCTGTGACGCCTTGCTGCAGCACTATGCCGCGCATTCTAGCGCCGC
GCACCACATTGACTTCCACCCTAGCGGAGATTTCCTCGTGTCTTCTGGCC
AAGATGCAGCAGTGAGAATTTGGGATCTTCGAGCTGGCACTCCGCTGTTT
ACGTTACGAGGACACGAAGGAGCGGTGAGAGGAGCGTCTTTCAGCAAGGA
TGGACGCCACTTTGCCACGGGAGGAGCTGTGGATGGAGTTGTCATGGTAT
GGCAAGCTGACCTCGCTGCAGCCCACTCCTCCAAAACCACATCCCCAAGA
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