mRNA_M-pyrifera_M_contig105687.1222.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105687.1222.1
Unique NamemRNA_M-pyrifera_M_contig105687.1222.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig105687.1222.1 vs. uniprot
Match: A0A7S1GD51_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GD51_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.710e-8
Identity = 38/129 (29.46%), Postives = 64/129 (49.61%), Query Frame = 1 
Query:   10 PFSLCLFVSVLVSLTPAIAGFVVLGTIGDAGGCE-------------PSLVG-WAVGQSLVLLSNFLIALYLCWRLGGPYDISKQEDVDFLARATYAVCEDPAMALYILILLFSVAWTIVGHIWLGEAN 354
            P + C   ++LV+L PA A  V+L     A G E             P   G W V Q L+   + +++  +  +   PYD +   D DF +R  + +CED  +A+++L+L+FS+ W  +G  W+G + 
Sbjct:   80 PMAPCALFALLVNLLPACALAVILALAPTAKGMEQYGSNFSAAQALCPQPAGLWLVVQILIFYVDCVLSWRMMLKFRHPYDYTNPADKDFYSRLCHMLCEDVGVAVWMLVLIFSLVWQGLGISWVGASR 208
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105687.1222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S1GD51_9STRA1.710e-829.46Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105687contigM-pyrifera_M_contig105687:3..356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size354
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815565.7241204-CDS-M-pyrifera_M_contig105687:2..3561622815565.7241204-CDS-M-pyrifera_M_contig105687:2..356Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105687 3..356 +
1692277466.3318849-CDS-M-pyrifera_M_contig105687:2..3561692277466.3318849-CDS-M-pyrifera_M_contig105687:2..356Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105687 3..356 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105687.1222.1prot_M-pyrifera_M_contig105687.1222.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105687 3..356 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105687.1222.1

>prot_M-pyrifera_M_contig105687.1222.1 ID=prot_M-pyrifera_M_contig105687.1222.1|Name=mRNA_M-pyrifera_M_contig105687.1222.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
FERPFSLCLFVSVLVSLTPAIAGFVVLGTIGDAGGCEPSLVGWAVGQSLV
LLSNFLIALYLCWRLGGPYDISKQEDVDFLARATYAVCEDPAMALYILIL
LFSVAWTIVGHIWLGEAN
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mRNA from alignment at M-pyrifera_M_contig105687:3..356+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105687.1222.1 ID=mRNA_M-pyrifera_M_contig105687.1222.1|Name=mRNA_M-pyrifera_M_contig105687.1222.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig105687:3..356+ (Macrocystis pyrifera P11B4 male)
TTTGAGCGGCCATTTTCGTTGTGCCTCTTCGTGTCGGTTTTGGTGTCTTT
GACGCCAGCGATCGCAGGTTTTGTAGTGTTAGGTACAATAGGTGATGCGG
GTGGGTGTGAGCCGTCACTGGTTGGGTGGGCAGTGGGGCAGAGTTTGGTG
TTGTTATCAAACTTTTTGATCGCATTGTACCTTTGCTGGAGGCTAGGCGG
TCCATATGATATTTCGAAGCAAGAAGACGTGGATTTTCTCGCAAGAGCCA
CGTATGCAGTGTGTGAAGATCCAGCAATGGCACTATACATCCTAATTTTG
CTGTTTTCGGTCGCTTGGACAATTGTGGGCCATATTTGGCTTGGTGAAGC
AAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105687:3..356+

>mRNA_M-pyrifera_M_contig105687.1222.1 ID=mRNA_M-pyrifera_M_contig105687.1222.1|Name=mRNA_M-pyrifera_M_contig105687.1222.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig105687:3..356+ (Macrocystis pyrifera P11B4 male)
TTTGAGCGGCCATTTTCGTTGTGCCTCTTCGTGTCGGTTTTGGTGTCTTT
GACGCCAGCGATCGCAGGTTTTGTAGTGTTAGGTACAATAGGTGATGCGG
GTGGGTGTGAGCCGTCACTGGTTGGGTGGGCAGTGGGGCAGAGTTTGGTG
TTGTTATCAAACTTTTTGATCGCATTGTACCTTTGCTGGAGGCTAGGCGG
TCCATATGATATTTCGAAGCAAGAAGACGTGGATTTTCTCGCAAGAGCCA
CGTATGCAGTGTGTGAAGATCCAGCAATGGCACTATACATCCTAATTTTG
CTGTTTTCGGTCGCTTGGACAATTGTGGGCCATATTTGGCTTGGTGAAGC
AAATTTTGAGCGGCCATTTTCGTTGTGCCTCTTCGTGTCGGTTTTGGTGT
CTTTGACGCCAGCGATCGCAGGTTTTGTAGTGTTAGGTACAATAGGTGAT
GCGGGTGGGTGTGAGCCGTCACTGGTTGGGTGGGCAGTGGGGCAGAGTTT
GGTGTTGTTATCAAACTTTTTGATCGCATTGTACCTTTGCTGGAGGCTAG
GCGGTCCATATGATATTTCGAAGCAAGAAGACGTGGATTTTCTCGCAAGA
GCCACGTATGCAGTGTGTGAAGATCCAGCAATGGCACTATACATCCTAAT
TTTGCTGTTTTCGGTCGCTTGGACAATTGTGGGCCATATTTGGCTTGGTG
AAGCAAAT
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