mRNA_M-pyrifera_M_contig104472.964.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104472.964.1
Unique NamemRNA_M-pyrifera_M_contig104472.964.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig104472.964.1 vs. uniprot
Match: A0A7S1CDG2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CDG2_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.180e-18
Identity = 45/82 (54.88%), Postives = 58/82 (70.73%), Query Frame = 1
Query:    1 KVIDLRAGMERVVIGTLFKEMRLHPSVLAEFTKKGRALQVHR-ENFCSSGDSLVLEDESGRVALAGDGVPVGTLVTGIVVAV 243
            K+IDL  G  +V IGTL+K+MRL P+VL +F+ +     V R +NF    D+LVLEDESGRV L G  +P+G LVTG+VVAV
Sbjct:  105 KIIDLTVGKVQVAIGTLYKDMRLKPNVLDDFSHERSLAPVARLDNFVDEADTLVLEDESGRVPLVGSRLPLGDLVTGVVVAV 186          
BLAST of mRNA_M-pyrifera_M_contig104472.964.1 vs. uniprot
Match: C1EE38_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EE38_MICCC)

HSP 1 Score: 84.3 bits (207), Expect = 2.990e-17
Identity = 45/85 (52.94%), Postives = 60/85 (70.59%), Query Frame = 1
Query:    1 KVIDLRAGMERVVIGTLFKEMRLHPSVLAEFTKKG--RALQVHRENFCSSGDSLVLEDESGRVALAGDGVPVGTLVTGIVVAVRG 249
            KV+DL+ G E VV+GTL+K+M+L PS+L E+ K+   +A +V  + F S  DSLVLEDE  RV L G GV V   VTG+V+AV+G
Sbjct:   69 KVLDLKEGEECVVMGTLYKDMKLKPSILDEYVKEAGAKASEVAAKKFVSDDDSLVLEDEGARVRLTGKGVAVDCFVTGVVLAVKG 153          
BLAST of mRNA_M-pyrifera_M_contig104472.964.1 vs. uniprot
Match: A0A7S1CVV2_9CHLO (Hypothetical protein n=1 Tax=Picochlorum oklahomense TaxID=249345 RepID=A0A7S1CVV2_9CHLO)

HSP 1 Score: 83.6 bits (205), Expect = 5.750e-17
Identity = 43/83 (51.81%), Postives = 59/83 (71.08%), Query Frame = 1
Query:    1 KVIDLRAGMERVVIGTLFKEMRLHPSVLAEFTKKGRALQVHRENFCSSGDSLVLEDESGRVALAGDGVPVGTLVTGIVVAVRG 249
            +V+D+    E  ++GTL+KEM L PS+L E+TK   A Q+    F  +GD LVLEDE GRV+L GD + VGT+VTG++VAV+G
Sbjct:   86 RVLDVPEDKEVCIVGTLYKEMSLKPSILDEYTKDVGA-QLGGNRFTQAGDVLVLEDEGGRVSLVGDALDVGTMVTGVIVAVKG 167          
BLAST of mRNA_M-pyrifera_M_contig104472.964.1 vs. uniprot
Match: A0A7S0T386_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0T386_9CHLO)

HSP 1 Score: 76.3 bits (186), Expect = 1.390e-15
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 1
Query:    1 KVIDLRAGMERVVIGTLFKEMRLHPSVLAEFTKKG--RALQVHRENFCSSGDSLVLEDESGRVALAGDGVPVGTLVTGIVVAVRG 249
            KV+DL+ G E VV+GTL+K+MRL PS+L E+TK        V    F +  D++VLEDE  RV L G  V +  LVTGI++A RG
Sbjct:   68 KVLDLKEGEECVVMGTLYKDMRLRPSILDEYTKDAGLAGSDVGSGKFIAGDDTVVLEDEGARVKLGGAAVHIPRLVTGIIMAARG 152          
BLAST of mRNA_M-pyrifera_M_contig104472.964.1 vs. uniprot
Match: A0A0D2MY13_9CHLO (DNA polymerase delta small subunit (Fragment) n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MY13_9CHLO)

HSP 1 Score: 75.9 bits (185), Expect = 1.720e-15
Identity = 43/87 (49.43%), Postives = 56/87 (64.37%), Query Frame = 1
Query:    1 KVIDLRAGMERVVIGTLFKEMRLHPSVLAEFTKKGRALQ-VHRENFCSSGDSLVLEDESGRVALAGDG---VPVGTLVTGIVVAVRG 249
            K + +   ++ VVIGTLFK+ RL PSVL E+TK G   Q +   NFC + D++V+EDE  R+ L G     +PVG LVTG V AVRG
Sbjct:   66 KTLGVGEDVDCVVIGTLFKQQRLRPSVLDEYTKDGALKQALGLTNFCDAADTIVMEDEGARLVLRGASDAALPVGVLVTGTVAAVRG 152          
BLAST of mRNA_M-pyrifera_M_contig104472.964.1 vs. uniprot
Match: A0A7S2UV96_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV96_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 2.280e-15
Identity = 43/83 (51.81%), Postives = 52/83 (62.65%), Query Frame = 1
Query:    1 KVIDLRAGMERVVIGTLFKEMRLHPSVLAEFTKKGRALQVHRENFCSSGDSLVLEDESGRVALAGDGVPVGTLVTGIVVAVRG 249
            KV+ L+     VVIGTL+KEM+  P VL EF   G        ++ S  D LVLEDESGRV L+G+ VPV  L TGIV AV+G
Sbjct:   58 KVVHLQENQTWVVIGTLYKEMKKKPCVLDEFQATGLTKSDESSDYTSDDDYLVLEDESGRVILSGEHVPVHDLCTGIVCAVKG 140          
BLAST of mRNA_M-pyrifera_M_contig104472.964.1 vs. uniprot
Match: A0A7S3Y0Y1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y0Y1_HETAK)

HSP 1 Score: 74.7 bits (182), Expect = 2.660e-15
Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    1 KVIDLRAGMERVVIGTLFKEMRLHPSVLAEFTKKGRAL--QVHRENFCSSGDSLVLEDESGRVALAGDGVPVGTLVTGIVVAVRG 249
            K++ L  G +R+V+GTLFKEM   P +L E       +  QV  EN+ S  D L+LEDESGR+AL G+ + VG L TG+++AV+G
Sbjct:    4 KIVKLGEGNQRIVLGTLFKEMGKRPDILKEMDDLEFNIENQVELENYTSDTDRLILEDESGRIALVGE-IEVGRLCTGLIIAVKG 87          
BLAST of mRNA_M-pyrifera_M_contig104472.964.1 vs. uniprot
Match: A0A453J1Y6_AEGTS (DNA_pol_D_N domain-containing protein n=4 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453J1Y6_AEGTS)

HSP 1 Score: 77.0 bits (188), Expect = 5.830e-15
Identity = 42/83 (50.60%), Postives = 58/83 (69.88%), Query Frame = 1
Query:    4 VIDLRAGMERVVIGTLFKEMRLHPSVLAEFTKKGRALQ-VHRENFCSSGDSLVLEDESGRVALAGDGVPVGTLVTGIVVAVRG 249
            V+ L  G + V++GTL+K M+L PS+L E++K+  A+  V   NF  S D+L+LEDESGRVALAG  +P    VTG+VVA+ G
Sbjct:   67 VLGLEEGKDCVLVGTLYKHMKLKPSILDEYSKERSAIPLVKPHNFMHSDDNLILEDESGRVALAG-AIPPAAYVTGVVVALHG 148          
BLAST of mRNA_M-pyrifera_M_contig104472.964.1 vs. uniprot
Match: A0A388LQG3_CHABU (Reverse transcriptase domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LQG3_CHABU)

HSP 1 Score: 77.0 bits (188), Expect = 1.310e-14
Identity = 42/83 (50.60%), Postives = 53/83 (63.86%), Query Frame = 1
Query:    4 VIDLRAGMERVVIGTLFKEMRLHPSVLAEFTK-KGRALQVHRENFCSSGDSLVLEDESGRVALAGDGVPVGTLVTGIVVAVRG 249
            V++L  G+E  VIGT++K M+L PS+L E+ K +     V    F    D L+LEDESGRV L GDGV VG  VTG+VV V G
Sbjct:   66 VLNLEEGVECAVIGTIYKHMQLKPSILDEYAKERSNVPLVTASKFVRDDDHLILEDESGRVKLVGDGVDVGGYVTGVVVGVLG 148          
BLAST of mRNA_M-pyrifera_M_contig104472.964.1 vs. uniprot
Match: W7TUU6_9STRA (Polymerase (Dna directed) delta regulatory subunit n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TUU6_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.310e-14
Identity = 46/91 (50.55%), Postives = 61/91 (67.03%), Query Frame = 1
Query:    1 KVIDLRAGMER-VVIGTLFKEMRLHPSVLAEFTKKGRALQVHRE-------NFCSSGDSLVLEDESGRVALAGDGVPVGTLVTGIVVAVRG 249
            K+IDL  G    +VIGT+FK+M L PS+L E+  +  ALQ   +       N+ SS D+LVLEDESGRV L+G+ +PVG  VTG+VVA +G
Sbjct:  113 KIIDLVDGARTSMVIGTIFKDMPLRPSLLDEYRDEA-ALQGALQPAPGPDTNYTSSEDTLVLEDESGRVTLSGEALPVGDFVTGLVVAAKG 202          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104472.964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1CDG2_9STRA2.180e-1854.88Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
C1EE38_MICCC2.990e-1752.94Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
A0A7S1CVV2_9CHLO5.750e-1751.81Hypothetical protein n=1 Tax=Picochlorum oklahomen... [more]
A0A7S0T386_9CHLO1.390e-1549.41Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A0D2MY13_9CHLO1.720e-1549.43DNA polymerase delta small subunit (Fragment) n=1 ... [more]
A0A7S2UV96_9STRA2.280e-1551.81Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3Y0Y1_HETAK2.660e-1547.06Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A453J1Y6_AEGTS5.830e-1550.60DNA_pol_D_N domain-containing protein n=4 Tax=Aegi... [more]
A0A388LQG3_CHABU1.310e-1450.60Reverse transcriptase domain-containing protein n=... [more]
W7TUU6_9STRA1.310e-1450.55Polymerase (Dna directed) delta regulatory subunit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104472contigM-pyrifera_M_contig104472:1..524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score72.8
Seed ortholog evalue7.7e-11
Seed eggNOG ortholog296587.XP_002505212.1
Preferred namePOLD2
KEGG rclassRC02795
KEGG koko:K02328
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03430,ko03440,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map03430,map03440,map05166
KEGG ModuleM00262
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0022616,GO:0030894,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0033554,GO:0034641,GO:0034645,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043601,GO:0043625,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:1901360,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.DNA-directed DNA polymerase activity
EggNOG OGs34J57@3041,37SHS@33090,COG1311@1,KOG2732@2759
COG Functional cat.L
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Exons2
Model size249
Cds size225
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104472.964.1prot_M-pyrifera_M_contig104472.964.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104472 25..524 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815552.003911-UTR-M-pyrifera_M_contig104472:0..241622815552.003911-UTR-M-pyrifera_M_contig104472:0..24Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig104472 1..24 +
1692277460.2034762-UTR-M-pyrifera_M_contig104472:0..241692277460.2034762-UTR-M-pyrifera_M_contig104472:0..24Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig104472 1..24 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815552.019524-CDS-M-pyrifera_M_contig104472:24..1251622815552.019524-CDS-M-pyrifera_M_contig104472:24..125Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104472 25..125 +
1692277460.215705-CDS-M-pyrifera_M_contig104472:24..1251692277460.215705-CDS-M-pyrifera_M_contig104472:24..125Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104472 25..125 +
1622815552.030318-CDS-M-pyrifera_M_contig104472:400..5241622815552.030318-CDS-M-pyrifera_M_contig104472:400..524Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104472 401..524 +
1692277460.2249198-CDS-M-pyrifera_M_contig104472:400..5241692277460.2249198-CDS-M-pyrifera_M_contig104472:400..524Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104472 401..524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104472.964.1

>prot_M-pyrifera_M_contig104472.964.1 ID=prot_M-pyrifera_M_contig104472.964.1|Name=mRNA_M-pyrifera_M_contig104472.964.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=75bp
MERVVIGTLFKEMRLHPSVLAEFTKKGRALQVHRENFCSSGDSLVLEDES
GRVALAGDGVPVGTLVTGIVVAVRG
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mRNA from alignment at M-pyrifera_M_contig104472:1..524+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104472.964.1 ID=mRNA_M-pyrifera_M_contig104472.964.1|Name=mRNA_M-pyrifera_M_contig104472.964.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=524bp|location=Sequence derived from alignment at M-pyrifera_M_contig104472:1..524+ (Macrocystis pyrifera P11B4 male)
AAAGTCATCGACCTCAGGGCAGGCATGGAGCGGGTGGTGATCGGCACCCT CTTCAAGGAGATGCGACTCCACCCCTCCGTCCTCGCCGAGTTCACCAAGA AAGGAAGGGCGCTCCAAGTGCATCGGTAAGGAAAAAGATCGAGGGAGGGT TAATACTTTTGTTATGGATTTTATTGAGAGGTCGAGAAAAAGAGAGACAT GTGGTGTTGAGAAGAATGGGGAAGAAGGGGGGTGTGAGGGTTGAAAAGAG GAAAAGAAGAAGGGAGGGTTTGAGGGGTGTTTTTTTCTTTTCTTTATTGC CCTCTTCTCTTCTCCATCCAACCACCCCCTCCTTCCTCCCCTCCTCCAAA CCCACCCTCACCTTCCTTCCGTCTTCCATCTTTCCTTTCCTTCTTTGCAG CGAAAACTTTTGTTCTTCCGGTGATTCTTTGGTGCTTGAGGATGAGAGTG GACGGGTGGCATTGGCAGGGGATGGAGTTCCTGTGGGGACATTGGTGACT GGGATAGTGGTGGCAGTGAGAGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104472:1..524+

>mRNA_M-pyrifera_M_contig104472.964.1 ID=mRNA_M-pyrifera_M_contig104472.964.1|Name=mRNA_M-pyrifera_M_contig104472.964.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig104472:1..524+ (Macrocystis pyrifera P11B4 male)
ATGGAGCGGGTGGTGATCGGCACCCTCTTCAAGGAGATGCGACTCCACCC
CTCCGTCCTCGCCGAGTTCACCAAGAAAGGAAGGGCGCTCCAAGTGCATC
GATGGAGCGGGTGGTGATCGGCACCCTCTTCAAGGAGATGCGACTCCACC
CCTCCGTCCTCGCCGAGTTCACCAAGAAAGGAAGGGCGCTCCAAGTGCAT
CGCGAAAACTTTTGTTCTTCCGGTGATTCTTTGGTGCTTGAGGATGAGAG
TGGACGGGTGGCATTGGCAGGGGATGGAGTTCCTGTGGGGACATTGGTGA
CTGGGATAGTGGTGGCAGTGAGAGGGCGAAAACTTTTGTTCTTCCGGTGA
TTCTTTGGTGCTTGAGGATGAGAGTGGACGGGTGGCATTGGCAGGGGATG
GAGTTCCTGTGGGGACATTGGTGACTGGGATAGTGGTGGCAGTGAGAGGG
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