prot_M-pyrifera_M_contig104472.964.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig104472.964.1
Unique Nameprot_M-pyrifera_M_contig104472.964.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length75
Homology
BLAST of mRNA_M-pyrifera_M_contig104472.964.1 vs. uniprot
Match: A0A7S1CVV2_9CHLO (Hypothetical protein n=1 Tax=Picochlorum oklahomense TaxID=249345 RepID=A0A7S1CVV2_9CHLO)

HSP 1 Score: 79.3 bits (194), Expect = 1.340e-15
Identity = 41/74 (55.41%), Postives = 54/74 (72.97%), Query Frame = 0
Query:    2 ERVVIGTLFKEMRLHPSVLAEFTKKGRALQVHRENFCSSGDSLVLEDESGRVALAGDGVPVGTLVTGIVVAVRG 75
            E  ++GTL+KEM L PS+L E+TK   A Q+    F  +GD LVLEDE GRV+L GD + VGT+VTG++VAV+G
Sbjct:   95 EVCIVGTLYKEMSLKPSILDEYTKDVGA-QLGGNRFTQAGDVLVLEDEGGRVSLVGDALDVGTMVTGVIVAVKG 167          
BLAST of mRNA_M-pyrifera_M_contig104472.964.1 vs. uniprot
Match: A0A0D2MY13_9CHLO (DNA polymerase delta small subunit (Fragment) n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MY13_9CHLO)

HSP 1 Score: 74.3 bits (181), Expect = 5.010e-15
Identity = 42/76 (55.26%), Postives = 51/76 (67.11%), Query Frame = 0
Query:    4 VVIGTLFKEMRLHPSVLAEFTKKGRALQ-VHRENFCSSGDSLVLEDESGRVALAGDG---VPVGTLVTGIVVAVRG 75
            VVIGTLFK+ RL PSVL E+TK G   Q +   NFC + D++V+EDE  R+ L G     +PVG LVTG V AVRG
Sbjct:   77 VVIGTLFKQQRLRPSVLDEYTKDGALKQALGLTNFCDAADTIVMEDEGARLVLRGASDAALPVGVLVTGTVAAVRG 152          
BLAST of mRNA_M-pyrifera_M_contig104472.964.1 vs. uniprot
Match: A0A7S1CDG2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CDG2_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 8.560e-15
Identity = 40/72 (55.56%), Postives = 52/72 (72.22%), Query Frame = 0
Query:    3 RVVIGTLFKEMRLHPSVLAEFTKKGRALQVHR-ENFCSSGDSLVLEDESGRVALAGDGVPVGTLVTGIVVAV 73
            +V IGTL+K+MRL P+VL +F+ +     V R +NF    D+LVLEDESGRV L G  +P+G LVTG+VVAV
Sbjct:  115 QVAIGTLYKDMRLKPNVLDDFSHERSLAPVARLDNFVDEADTLVLEDESGRVPLVGSRLPLGDLVTGVVVAV 186          
BLAST of mRNA_M-pyrifera_M_contig104472.964.1 vs. uniprot
Match: A0A2P6VAW8_9CHLO (DNA polymerase delta small subunit n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VAW8_9CHLO)

HSP 1 Score: 75.1 bits (183), Expect = 4.470e-14
Identity = 39/75 (52.00%), Postives = 50/75 (66.67%), Query Frame = 0
Query:    2 ERVVIGTLFKEMRLHPSVLAEFTK-KGRALQVHRENFCSSGDSLVLEDESGRVALAGDGVPVGTLVTGIVVAVRG 75
            E  V+GTL+KEM+L PS+L E+ K +G A Q+ R  F    D L+LEDE  R+ L GD +PVG   TG+V AVRG
Sbjct:  101 EVAVVGTLYKEMKLKPSILDEYLKDRGLAEQLGRARFTQPDDRLILEDEGARLQLCGDALPVGECTTGVVAAVRG 175          
BLAST of mRNA_M-pyrifera_M_contig104472.964.1 vs. uniprot
Match: A0A7S2UV96_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV96_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.010e-13
Identity = 40/72 (55.56%), Postives = 47/72 (65.28%), Query Frame = 0
Query:    4 VVIGTLFKEMRLHPSVLAEFTKKGRALQVHRENFCSSGDSLVLEDESGRVALAGDGVPVGTLVTGIVVAVRG 75
            VVIGTL+KEM+  P VL EF   G        ++ S  D LVLEDESGRV L+G+ VPV  L TGIV AV+G
Sbjct:   69 VVIGTLYKEMKKKPCVLDEFQATGLTKSDESSDYTSDDDYLVLEDESGRVILSGEHVPVHDLCTGIVCAVKG 140          
BLAST of mRNA_M-pyrifera_M_contig104472.964.1 vs. uniprot
Match: C1EE38_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EE38_MICCC)

HSP 1 Score: 73.9 bits (180), Expect = 1.070e-13
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 0
Query:    2 ERVVIGTLFKEMRLHPSVLAEFTKKG--RALQVHRENFCSSGDSLVLEDESGRVALAGDGVPVGTLVTGIVVAVRG 75
            E VV+GTL+K+M+L PS+L E+ K+   +A +V  + F S  DSLVLEDE  RV L G GV V   VTG+V+AV+G
Sbjct:   78 ECVVMGTLYKDMKLKPSILDEYVKEAGAKASEVAAKKFVSDDDSLVLEDEGARVRLTGKGVAVDCFVTGVVLAVKG 153          
BLAST of mRNA_M-pyrifera_M_contig104472.964.1 vs. uniprot
Match: A0A2P6TSX7_CHLSO (DNA polymerase delta small subunit n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TSX7_CHLSO)

HSP 1 Score: 73.6 bits (179), Expect = 1.480e-13
Identity = 40/75 (53.33%), Postives = 48/75 (64.00%), Query Frame = 0
Query:    2 ERVVIGTLFKEMRLHPSVLAEFTK-KGRALQVHRENFCSSGDSLVLEDESGRVALAGDGVPVGTLVTGIVVAVRG 75
            E  V+GTL+KEM L PS+L E+ K +    Q+ R  F +  D LVLEDE  RV L GD  PVG  VTG+V AVRG
Sbjct:  100 EVAVVGTLYKEMALKPSILDEYVKDRSLGQQLGRARFSTPEDRLVLEDEGARVTLCGDACPVGECVTGVVAAVRG 174          
BLAST of mRNA_M-pyrifera_M_contig104472.964.1 vs. uniprot
Match: A0A250XAK9_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XAK9_9CHLO)

HSP 1 Score: 73.2 bits (178), Expect = 1.860e-13
Identity = 41/76 (53.95%), Postives = 53/76 (69.74%), Query Frame = 0
Query:    2 ERVVIGTLFKEMRLHPSVLAEFTK-KGRALQVHRE-NFCSSGDSLVLEDESGRVALAGDGVPVGTLVTGIVVAVRG 75
            E   IGTLFK+M+L PS++ E+TK +G    +    NFCS  D LVLEDE GR++L G  +PV  LVTG+V+AVRG
Sbjct:   32 EVAAIGTLFKDMKLKPSIMDEYTKDRGMKHALGAGCNFCSDSDGLVLEDEGGRMSLKGTCLPVHELVTGVVMAVRG 107          
BLAST of mRNA_M-pyrifera_M_contig104472.964.1 vs. uniprot
Match: W7TUU6_9STRA (Polymerase (Dna directed) delta regulatory subunit n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TUU6_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.860e-13
Identity = 41/79 (51.90%), Postives = 55/79 (69.62%), Query Frame = 0
Query:    4 VVIGTLFKEMRLHPSVLAEFTKKGRALQVHRE-------NFCSSGDSLVLEDESGRVALAGDGVPVGTLVTGIVVAVRG 75
            +VIGT+FK+M L PS+L E+  +  ALQ   +       N+ SS D+LVLEDESGRV L+G+ +PVG  VTG+VVA +G
Sbjct:  125 MVIGTIFKDMPLRPSLLDEYRDEA-ALQGALQPAPGPDTNYTSSEDTLVLEDESGRVTLSGEALPVGDFVTGLVVAAKG 202          
BLAST of mRNA_M-pyrifera_M_contig104472.964.1 vs. uniprot
Match: A0A453J1Y6_AEGTS (DNA_pol_D_N domain-containing protein n=4 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453J1Y6_AEGTS)

HSP 1 Score: 72.0 bits (175), Expect = 3.040e-13
Identity = 39/73 (53.42%), Postives = 53/73 (72.60%), Query Frame = 0
Query:    4 VVIGTLFKEMRLHPSVLAEFTKKGRALQ-VHRENFCSSGDSLVLEDESGRVALAGDGVPVGTLVTGIVVAVRG 75
            V++GTL+K M+L PS+L E++K+  A+  V   NF  S D+L+LEDESGRVALAG  +P    VTG+VVA+ G
Sbjct:   77 VLVGTLYKHMKLKPSILDEYSKERSAIPLVKPHNFMHSDDNLILEDESGRVALAG-AIPPAAYVTGVVVALHG 148          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104472.964.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1CVV2_9CHLO1.340e-1555.41Hypothetical protein n=1 Tax=Picochlorum oklahomen... [more]
A0A0D2MY13_9CHLO5.010e-1555.26DNA polymerase delta small subunit (Fragment) n=1 ... [more]
A0A7S1CDG2_9STRA8.560e-1555.56Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A2P6VAW8_9CHLO4.470e-1452.00DNA polymerase delta small subunit n=1 Tax=Micract... [more]
A0A7S2UV96_9STRA1.010e-1355.56Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
C1EE38_MICCC1.070e-1352.63Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
A0A2P6TSX7_CHLSO1.480e-1353.33DNA polymerase delta small subunit n=1 Tax=Chlorel... [more]
A0A250XAK9_9CHLO1.860e-1353.95Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
W7TUU6_9STRA2.860e-1351.90Polymerase (Dna directed) delta regulatory subunit... [more]
A0A453J1Y6_AEGTS3.040e-1353.42DNA_pol_D_N domain-containing protein n=4 Tax=Aegi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR040663DNA polymerase delta subunit, OB-fold domainPFAMPF18018DNA_pol_D_Ncoord: 3..75
e-value: 9.0E-23
score: 80.8
NoneNo IPR availableGENE3D2.40.50.430coord: 1..75
e-value: 7.3E-22
score: 79.5
IPR024826DNA polymerase delta/II small subunit familyPANTHERPTHR10416DNA POLYMERASE DELTA SUBUNIT 2coord: 4..75

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104472contigM-pyrifera_M_contig104472:25..524 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104472.964.1mRNA_M-pyrifera_M_contig104472.964.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig104472 1..524 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig104472.964.1 ID=prot_M-pyrifera_M_contig104472.964.1|Name=mRNA_M-pyrifera_M_contig104472.964.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=75bp
MERVVIGTLFKEMRLHPSVLAEFTKKGRALQVHRENFCSSGDSLVLEDES
GRVALAGDGVPVGTLVTGIVVAVRG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR040663DNA_pol_D_N
IPR024826DNA_pol_delta/II_ssu