mRNA_M-pyrifera_M_contig104329.920.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104329.920.1
Unique NamemRNA_M-pyrifera_M_contig104329.920.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig104329.920.1 vs. uniprot
Match: A0A7S4HYS1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HYS1_9EUKA)

HSP 1 Score: 101 bits (252), Expect = 6.560e-24
Identity = 43/89 (48.31%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:   70 TAEPCTFTEGGFYSYDDVAQCFYSIRLDETFKLQTLDTMRKALELYTFFDIANHSPDPHLPVEIDMVAGLQQIEDRPYVYDMDFHSDMR 336
            ++ PC F EG +Y Y++  +CF SI L +  K  TL T+ ++LELYTF+DIA++SPDP+LP++++M  GLQ+I  R Y+ D DF +D+R
Sbjct:   21 SSSPCVFDEGEYYDYEETLECFMSIPLTDDIKFTTLATLNRSLELYTFYDIAHNSPDPNLPMQVNMQQGLQEIASRDYLTDFDFQNDLR 109
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104329.920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4HYS1_9EUKA6.560e-2448.31Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104329contigM-pyrifera_M_contig104329:308..643 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue3.8e-11
Seed eggNOG ortholog5762.XP_002673858.1
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Peptidase family S41
EggNOG OGs2CY17@1,2S18W@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size336
Cds size321
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815549.6732712-UTR-M-pyrifera_M_contig104329:307..3221622815549.6732712-UTR-M-pyrifera_M_contig104329:307..322Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig104329 308..322 +
1692277459.2303133-UTR-M-pyrifera_M_contig104329:307..3221692277459.2303133-UTR-M-pyrifera_M_contig104329:307..322Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig104329 308..322 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815549.6891282-CDS-M-pyrifera_M_contig104329:322..6431622815549.6891282-CDS-M-pyrifera_M_contig104329:322..643Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104329 323..643 +
1692277459.2429156-CDS-M-pyrifera_M_contig104329:322..6431692277459.2429156-CDS-M-pyrifera_M_contig104329:322..643Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104329 323..643 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104329.920.1prot_M-pyrifera_M_contig104329.920.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104329 323..643 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104329.920.1

>prot_M-pyrifera_M_contig104329.920.1 ID=prot_M-pyrifera_M_contig104329.920.1|Name=mRNA_M-pyrifera_M_contig104329.920.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
MVVAAVVACLILPGEAQSTAEPCTFTEGGFYSYDDVAQCFYSIRLDETFK
LQTLDTMRKALELYTFFDIANHSPDPHLPVEIDMVAGLQQIEDRPYVYDM
DFHSDMR
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mRNA from alignment at M-pyrifera_M_contig104329:308..643+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104329.920.1 ID=mRNA_M-pyrifera_M_contig104329.920.1|Name=mRNA_M-pyrifera_M_contig104329.920.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig104329:308..643+ (Macrocystis pyrifera P11B4 male)
GTCATAGCAGTGGCTATGGTGGTGGCGGCGGTGGTGGCATGCCTTATCCT
GCCAGGAGAGGCACAGAGCACTGCAGAGCCATGCACCTTCACCGAGGGAG
GCTTCTACAGCTACGACGATGTGGCGCAGTGCTTCTACTCGATCAGACTC
GACGAGACCTTCAAGCTCCAGACGCTTGACACCATGAGGAAGGCCCTCGA
GCTCTACACGTTCTTCGACATCGCAAACCACAGCCCCGACCCCCACCTCC
CCGTGGAGATCGACATGGTAGCTGGCCTGCAGCAGATTGAGGACAGACCC
TACGTCTATGATATGGACTTCCATTCCGATATGCGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104329:308..643+

>mRNA_M-pyrifera_M_contig104329.920.1 ID=mRNA_M-pyrifera_M_contig104329.920.1|Name=mRNA_M-pyrifera_M_contig104329.920.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig104329:308..643+ (Macrocystis pyrifera P11B4 male)
ATGGTGGTGGCGGCGGTGGTGGCATGCCTTATCCTGCCAGGAGAGGCACA
GAGCACTGCAGAGCCATGCACCTTCACCGAGGGAGGCTTCTACAGCTACG
ACGATGTGGCGCAGTGCTTCTACTCGATCAGACTCGACGAGACCTTCAAG
CTCCAGACGCTTGACACCATGAGGAAGGCCCTCGAGCTCTACACGTTCTT
CGACATCGCAAACCACAGCCCCGACCCCCACCTCCCCGTGGAGATCGACA
TGGTAGCTGGCCTGCAGCAGATTGAGGACAGACCCTACGTCTATGATATG
GACTTCCATTCCGATATGCGTATGGTGGTGGCGGCGGTGGTGGCATGCCT
TATCCTGCCAGGAGAGGCACAGAGCACTGCAGAGCCATGCACCTTCACCG
AGGGAGGCTTCTACAGCTACGACGATGTGGCGCAGTGCTTCTACTCGATC
AGACTCGACGAGACCTTCAAGCTCCAGACGCTTGACACCATGAGGAAGGC
CCTCGAGCTCTACACGTTCTTCGACATCGCAAACCACAGCCCCGACCCCC
ACCTCCCCGTGGAGATCGACATGGTAGCTGGCCTGCAGCAGATTGAGGAC
AGACCCTACGTCTATGATATGGACTTCCATTCCGATATGCGT
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