prot_M-pyrifera_M_contig104329.920.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig104329.920.1
Unique Nameprot_M-pyrifera_M_contig104329.920.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length107
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig104329.920.1 vs. uniprot
Match: A0A7S4HYS1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HYS1_9EUKA)

HSP 1 Score: 102 bits (253), Expect = 3.870e-24
Identity = 43/89 (48.31%), Postives = 65/89 (73.03%), Query Frame = 0 
Query:   19 TAEPCTFTEGGFYSYDDVAQCFYSIRLDETFKLQTLDTMRKALELYTFFDIANHSPDPHLPVEIDMVAGLQQIEDRPYVYDMDFHSDMR 107
            ++ PC F EG +Y Y++  +CF SI L +  K  TL T+ ++LELYTF+DIA++SPDP+LP++++M  GLQ+I  R Y+ D DF +D+R
Sbjct:   21 SSSPCVFDEGEYYDYEETLECFMSIPLTDDIKFTTLATLNRSLELYTFYDIAHNSPDPNLPMQVNMQQGLQEIASRDYLTDFDFQNDLR 109
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104329.920.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4HYS1_9EUKA3.870e-2448.31Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..12
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 17..107
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..16
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..16
score: 0.739

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104329contigM-pyrifera_M_contig104329:323..643 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104329.920.1mRNA_M-pyrifera_M_contig104329.920.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig104329 308..643 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig104329.920.1 ID=prot_M-pyrifera_M_contig104329.920.1|Name=mRNA_M-pyrifera_M_contig104329.920.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
MVVAAVVACLILPGEAQSTAEPCTFTEGGFYSYDDVAQCFYSIRLDETFK
LQTLDTMRKALELYTFFDIANHSPDPHLPVEIDMVAGLQQIEDRPYVYDM
DFHSDMR
back to top