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Homology
BLAST of mRNA_M-pyrifera_M_contig101755.362.1 vs. uniprot
Match: UPI00083568F9 (thioesterase family protein n=1 Tax=Actinomadura hibisca TaxID=68565 RepID=UPI00083568F9) HSP 1 Score: 52.4 bits (124), Expect = 1.650e-5 Identity = 42/106 (39.62%), Postives = 57/106 (53.77%), Query Frame = 1 Query: 1 DRTPAATAEGPIAFTANLPESWQSLRGVHGG---FATALATASIAAVEPERHIRTVHAAFLRPTTVGPVDIVVTTMRRGRTLSTHRASMRQAGIDVLEVVVTLCEP 309
D A TA+G TA + E W ++ G G FA ALA A AA E +R + T A FLRP VGP +I V ++RGR ST A++ Q G + + V+ +P
Sbjct: 10 DTAVARTADG--LRTAEIREGWSTIGGAPNGGYLFAVALAAAGEAA-EGQRPL-TATAHFLRPGVVGPAEIEVEPVKRGRVTSTVSAALSQEGKERVRVLAMYGDP 111
BLAST of mRNA_M-pyrifera_M_contig101755.362.1 vs. uniprot
Match: K5BCV0_MYCHD (Acyl-CoA thioesterase 2 n=1 Tax=Mycolicibacterium hassiacum (strain DSM 44199 / CIP 105218 / JCM 12690 / 3849) TaxID=1122247 RepID=K5BCV0_MYCHD) HSP 1 Score: 51.2 bits (121), Expect = 4.760e-5 Identity = 36/83 (43.37%), Postives = 47/83 (56.63%), Query Frame = 1 Query: 82 VHGGFATALATASIAAVEPERHIRTVHAAFLR--PTTVGPVDIVVTTMRRGRTLSTHRASMRQAGIDVLEVVVTLCEPTDGPD 324
+ GG A A + AA PE +HA F+R TV PVD++V R GRT+ST R ++QAG VL +V+ EP GPD
Sbjct: 58 IFGGQLLAQAMTAAAATVPEHRPSGIHALFVRGGDETV-PVDLIVERTRDGRTMSTRRVGVQQAGRTVLTAMVSFAEP--GPD 137
BLAST of mRNA_M-pyrifera_M_contig101755.362.1 vs. uniprot
Match: A0A1M3NA94_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium 68-20 TaxID=1895795 RepID=A0A1M3NA94_9DELT) HSP 1 Score: 50.8 bits (120), Expect = 5.900e-5 Identity = 30/92 (32.61%), Postives = 47/92 (51.09%), Query Frame = 1 Query: 40 FTANLPESWQSLRGVHGGFATALATASIAAVEPERH--IRTVHAAFLRPTTVGPVDIVVTTMRRGRTLSTHRASMRQAGIDVLEVVVTLCEP 309
++ ++P+ WQ +G GG L T +I E +R +R++ A P GPV+I VT+MRRG ++S A + Q V +L P
Sbjct: 23 YSGDIPDLWQQGKGAFGGVTVGLLTRAIVLAEADRGRTLRSLSAELCAPALPGPVEIAVTSMRRGGSMSFVEARLTQGDALVAHASASLAAP 114
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Bacteria |
Seed ortholog score | 63.9 |
Seed ortholog evalue | 5.7e-08 |
Seed eggNOG ortholog | 1003195.SCAT_4311 |
Hectar predicted targeting category | other localisation |
EggNOG free text desc. | Thioesterase-like superfamily |
EggNOG OGs | 2GMZB@201174,COG1946@1,COG1946@2 |
COG Functional cat. | I |
Best tax level | Actinobacteria |
Best eggNOG OG | NA|NA|NA |
Exons | 1 |
Model size | 360 |
Cds size | 360 |
Stop | 0 |
Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815516.8980052-CDS-M-pyrifera_M_contig101755:4..364 | 1622815516.8980052-CDS-M-pyrifera_M_contig101755:4..364 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig101755 5..364 - |
1692277446.1518104-CDS-M-pyrifera_M_contig101755:4..364 | 1692277446.1518104-CDS-M-pyrifera_M_contig101755:4..364 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig101755 5..364 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig101755.362.1 >prot_M-pyrifera_M_contig101755.362.1 ID=prot_M-pyrifera_M_contig101755.362.1|Name=mRNA_M-pyrifera_M_contig101755.362.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
DRTPAATAEGPIAFTANLPESWQSLRGVHGGFATALATASIAAVEPERHI RTVHAAFLRPTTVGPVDIVVTTMRRGRTLSTHRASMRQAGIDVLEVVVTL CEPTDGPDWTTTHLPRPSPV back to topmRNA from alignment at M-pyrifera_M_contig101755:5..364- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_M-pyrifera_M_contig101755.362.1 ID=mRNA_M-pyrifera_M_contig101755.362.1|Name=mRNA_M-pyrifera_M_contig101755.362.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig101755:5..364- (Macrocystis pyrifera P11B4 male) GACCGAACCCCGGCCGCCACCGCCGAGGGGCCGATTGCGTTCACTGCAAA
CCTCCCCGAGAGCTGGCAATCACTCAGAGGCGTTCACGGAGGTTTCGCCA
CGGCCCTCGCAACAGCATCGATCGCGGCCGTCGAGCCCGAACGCCACATT
CGAACGGTCCATGCAGCATTCCTTCGACCCACGACGGTCGGTCCGGTCGA
CATCGTCGTCACCACGATGCGTCGAGGCCGAACCCTCAGCACTCACCGGG
CCAGCATGCGTCAGGCCGGCATCGATGTGCTCGAGGTCGTCGTGACACTG
TGCGAACCAACGGACGGGCCGGACTGGACGACCACGCACCTGCCTCGCCC
CTCACCGGTC back to topCoding sequence (CDS) from alignment at M-pyrifera_M_contig101755:5..364- >mRNA_M-pyrifera_M_contig101755.362.1 ID=mRNA_M-pyrifera_M_contig101755.362.1|Name=mRNA_M-pyrifera_M_contig101755.362.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig101755:5..364- (Macrocystis pyrifera P11B4 male) GACCGAACCCCGGCCGCCACCGCCGAGGGGCCGATTGCGTTCACTGCAAA CCTCCCCGAGAGCTGGCAATCACTCAGAGGCGTTCACGGAGGTTTCGCCA CGGCCCTCGCAACAGCATCGATCGCGGCCGTCGAGCCCGAACGCCACATT CGAACGGTCCATGCAGCATTCCTTCGACCCACGACGGTCGGTCCGGTCGA CATCGTCGTCACCACGATGCGTCGAGGCCGAACCCTCAGCACTCACCGGG CCAGCATGCGTCAGGCCGGCATCGATGTGCTCGAGGTCGTCGTGACACTG TGCGAACCAACGGACGGGCCGGACTGGACGACCACGCACCTGCCTCGCCC CTCACCGGTCGACCGAACCCCGGCCGCCACCGCCGAGGGGCCGATTGCGT TCACTGCAAACCTCCCCGAGAGCTGGCAATCACTCAGAGGCGTTCACGGA GGTTTCGCCACGGCCCTCGCAACAGCATCGATCGCGGCCGTCGAGCCCGA ACGCCACATTCGAACGGTCCATGCAGCATTCCTTCGACCCACGACGGTCG GTCCGGTCGACATCGTCGTCACCACGATGCGTCGAGGCCGAACCCTCAGC ACTCACCGGGCCAGCATGCGTCAGGCCGGCATCGATGTGCTCGAGGTCGT CGTGACACTGTGCGAACCAACGGACGGGCCGGACTGGACGACCACGCACC TGCCTCGCCCCTCACCGGTC back to top
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