mRNA_M-pyrifera_M_contig101755.362.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101755.362.1
Unique NamemRNA_M-pyrifera_M_contig101755.362.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig101755.362.1 vs. uniprot
Match: UPI00083568F9 (thioesterase family protein n=1 Tax=Actinomadura hibisca TaxID=68565 RepID=UPI00083568F9)

HSP 1 Score: 52.4 bits (124), Expect = 1.650e-5
Identity = 42/106 (39.62%), Postives = 57/106 (53.77%), Query Frame = 1 
Query:    1 DRTPAATAEGPIAFTANLPESWQSLRGVHGG---FATALATASIAAVEPERHIRTVHAAFLRPTTVGPVDIVVTTMRRGRTLSTHRASMRQAGIDVLEVVVTLCEP 309
            D   A TA+G    TA + E W ++ G   G   FA ALA A  AA E +R + T  A FLRP  VGP +I V  ++RGR  ST  A++ Q G + + V+    +P
Sbjct:   10 DTAVARTADG--LRTAEIREGWSTIGGAPNGGYLFAVALAAAGEAA-EGQRPL-TATAHFLRPGVVGPAEIEVEPVKRGRVTSTVSAALSQEGKERVRVLAMYGDP 111
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BLAST of mRNA_M-pyrifera_M_contig101755.362.1 vs. uniprot
Match: K5BCV0_MYCHD (Acyl-CoA thioesterase 2 n=1 Tax=Mycolicibacterium hassiacum (strain DSM 44199 / CIP 105218 / JCM 12690 / 3849) TaxID=1122247 RepID=K5BCV0_MYCHD)

HSP 1 Score: 51.2 bits (121), Expect = 4.760e-5
Identity = 36/83 (43.37%), Postives = 47/83 (56.63%), Query Frame = 1 
Query:   82 VHGGFATALATASIAAVEPERHIRTVHAAFLR--PTTVGPVDIVVTTMRRGRTLSTHRASMRQAGIDVLEVVVTLCEPTDGPD 324
            + GG   A A  + AA  PE     +HA F+R    TV PVD++V   R GRT+ST R  ++QAG  VL  +V+  EP  GPD
Sbjct:   58 IFGGQLLAQAMTAAAATVPEHRPSGIHALFVRGGDETV-PVDLIVERTRDGRTMSTRRVGVQQAGRTVLTAMVSFAEP--GPD 137
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BLAST of mRNA_M-pyrifera_M_contig101755.362.1 vs. uniprot
Match: A0A1M3NA94_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium 68-20 TaxID=1895795 RepID=A0A1M3NA94_9DELT)

HSP 1 Score: 50.8 bits (120), Expect = 5.900e-5
Identity = 30/92 (32.61%), Postives = 47/92 (51.09%), Query Frame = 1 
Query:   40 FTANLPESWQSLRGVHGGFATALATASIAAVEPERH--IRTVHAAFLRPTTVGPVDIVVTTMRRGRTLSTHRASMRQAGIDVLEVVVTLCEP 309
            ++ ++P+ WQ  +G  GG    L T +I   E +R   +R++ A    P   GPV+I VT+MRRG ++S   A + Q    V     +L  P
Sbjct:   23 YSGDIPDLWQQGKGAFGGVTVGLLTRAIVLAEADRGRTLRSLSAELCAPALPGPVEIAVTSMRRGGSMSFVEARLTQGDALVAHASASLAAP 114
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101755.362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI00083568F91.650e-539.62thioesterase family protein n=1 Tax=Actinomadura h... [more]
K5BCV0_MYCHD4.760e-543.37Acyl-CoA thioesterase 2 n=1 Tax=Mycolicibacterium ... [more]
A0A1M3NA94_9DELT5.900e-532.61Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101755contigM-pyrifera_M_contig101755:5..364 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score63.9
Seed ortholog evalue5.7e-08
Seed eggNOG ortholog1003195.SCAT_4311
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Thioesterase-like superfamily
EggNOG OGs2GMZB@201174,COG1946@1,COG1946@2
COG Functional cat.I
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815516.8980052-CDS-M-pyrifera_M_contig101755:4..3641622815516.8980052-CDS-M-pyrifera_M_contig101755:4..364Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101755 5..364 -
1692277446.1518104-CDS-M-pyrifera_M_contig101755:4..3641692277446.1518104-CDS-M-pyrifera_M_contig101755:4..364Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101755 5..364 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101755.362.1prot_M-pyrifera_M_contig101755.362.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101755 5..364 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101755.362.1

>prot_M-pyrifera_M_contig101755.362.1 ID=prot_M-pyrifera_M_contig101755.362.1|Name=mRNA_M-pyrifera_M_contig101755.362.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
DRTPAATAEGPIAFTANLPESWQSLRGVHGGFATALATASIAAVEPERHI
RTVHAAFLRPTTVGPVDIVVTTMRRGRTLSTHRASMRQAGIDVLEVVVTL
CEPTDGPDWTTTHLPRPSPV
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mRNA from alignment at M-pyrifera_M_contig101755:5..364-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101755.362.1 ID=mRNA_M-pyrifera_M_contig101755.362.1|Name=mRNA_M-pyrifera_M_contig101755.362.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig101755:5..364- (Macrocystis pyrifera P11B4 male)
GACCGAACCCCGGCCGCCACCGCCGAGGGGCCGATTGCGTTCACTGCAAA
CCTCCCCGAGAGCTGGCAATCACTCAGAGGCGTTCACGGAGGTTTCGCCA
CGGCCCTCGCAACAGCATCGATCGCGGCCGTCGAGCCCGAACGCCACATT
CGAACGGTCCATGCAGCATTCCTTCGACCCACGACGGTCGGTCCGGTCGA
CATCGTCGTCACCACGATGCGTCGAGGCCGAACCCTCAGCACTCACCGGG
CCAGCATGCGTCAGGCCGGCATCGATGTGCTCGAGGTCGTCGTGACACTG
TGCGAACCAACGGACGGGCCGGACTGGACGACCACGCACCTGCCTCGCCC
CTCACCGGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101755:5..364-

>mRNA_M-pyrifera_M_contig101755.362.1 ID=mRNA_M-pyrifera_M_contig101755.362.1|Name=mRNA_M-pyrifera_M_contig101755.362.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig101755:5..364- (Macrocystis pyrifera P11B4 male)
GACCGAACCCCGGCCGCCACCGCCGAGGGGCCGATTGCGTTCACTGCAAA
CCTCCCCGAGAGCTGGCAATCACTCAGAGGCGTTCACGGAGGTTTCGCCA
CGGCCCTCGCAACAGCATCGATCGCGGCCGTCGAGCCCGAACGCCACATT
CGAACGGTCCATGCAGCATTCCTTCGACCCACGACGGTCGGTCCGGTCGA
CATCGTCGTCACCACGATGCGTCGAGGCCGAACCCTCAGCACTCACCGGG
CCAGCATGCGTCAGGCCGGCATCGATGTGCTCGAGGTCGTCGTGACACTG
TGCGAACCAACGGACGGGCCGGACTGGACGACCACGCACCTGCCTCGCCC
CTCACCGGTCGACCGAACCCCGGCCGCCACCGCCGAGGGGCCGATTGCGT
TCACTGCAAACCTCCCCGAGAGCTGGCAATCACTCAGAGGCGTTCACGGA
GGTTTCGCCACGGCCCTCGCAACAGCATCGATCGCGGCCGTCGAGCCCGA
ACGCCACATTCGAACGGTCCATGCAGCATTCCTTCGACCCACGACGGTCG
GTCCGGTCGACATCGTCGTCACCACGATGCGTCGAGGCCGAACCCTCAGC
ACTCACCGGGCCAGCATGCGTCAGGCCGGCATCGATGTGCTCGAGGTCGT
CGTGACACTGTGCGAACCAACGGACGGGCCGGACTGGACGACCACGCACC
TGCCTCGCCCCTCACCGGTC
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