mRNA_L-elsbetiae_contig7305.16177.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7305.16177.1
Unique NamemRNA_L-elsbetiae_contig7305.16177.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig7305.16177.1 vs. uniprot
Match: D7FMF6_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF6_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.680e-20
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:   13 RYTVMNRCSCVLVVRQYGSDVTMELDPGESRPLHWADGSLEATLSV 150
            RYTVMN+C CVLVVRQYGS+VTMEL PGESRPLHWADGSLEATLSV
Sbjct:  910 RYTVMNKCDCVLVVRQYGSNVTMELGPGESRPLHWADGSLEATLSV 955
[Close]
BLAST of mRNA_L-elsbetiae_contig7305.16177.1 vs. uniprot
Match: A0A6H5KXT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXT8_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 2.930e-6
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 1 
Query:   79 MELDPGESRPLHWADGSLEATLSV 150
            MEL PGESRPLHWADGSLEATLSV
Sbjct:    1 MELGPGESRPLHWADGSLEATLSV 24
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7305.16177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMF6_ECTSI1.680e-2091.30SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KXT8_9PHAE2.930e-695.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7305contigL-elsbetiae_contig7305:2000..2149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size126
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816814.0460703-UTR-L-elsbetiae_contig7305:1999..20231622816814.0460703-UTR-L-elsbetiae_contig7305:1999..2023Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7305 2000..2023 +
1691683833.626305-UTR-L-elsbetiae_contig7305:1999..20231691683833.626305-UTR-L-elsbetiae_contig7305:1999..2023Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7305 2000..2023 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816814.0598059-CDS-L-elsbetiae_contig7305:2023..21491622816814.0598059-CDS-L-elsbetiae_contig7305:2023..2149Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7305 2024..2149 +
1691683833.6365228-CDS-L-elsbetiae_contig7305:2023..21491691683833.6365228-CDS-L-elsbetiae_contig7305:2023..2149Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7305 2024..2149 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7305.16177.1prot_L-elsbetiae_contig7305.16177.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7305 2024..2149 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7305.16177.1

>prot_L-elsbetiae_contig7305.16177.1 ID=prot_L-elsbetiae_contig7305.16177.1|Name=mRNA_L-elsbetiae_contig7305.16177.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=42bp
MNRCSCVLVVRQYGSDVTMELDPGESRPLHWADGSLEATLSV
back to top

mRNA from alignment at L-elsbetiae_contig7305:2000..2149+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7305.16177.1 ID=mRNA_L-elsbetiae_contig7305.16177.1|Name=mRNA_L-elsbetiae_contig7305.16177.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=150bp|location=Sequence derived from alignment at L-elsbetiae_contig7305:2000..2149+ (Laminarionema elsbetiae ELsaHSoW15)
GCATACATACACAGGTACACCGTTATGAACCGGTGCAGCTGCGTGCTGGT
GGTGCGGCAGTACGGCAGCGACGTCACCATGGAGCTCGACCCCGGGGAGT
CCCGGCCTCTGCACTGGGCCGACGGGAGCCTCGAGGCGACCCTCTCCGTC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7305:2000..2149+

>mRNA_L-elsbetiae_contig7305.16177.1 ID=mRNA_L-elsbetiae_contig7305.16177.1|Name=mRNA_L-elsbetiae_contig7305.16177.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=252bp|location=Sequence derived from alignment at L-elsbetiae_contig7305:2000..2149+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACCGGTGCAGCTGCGTGCTGGTGGTGCGGCAGTACGGCAGCGACGT
CACCATGGAGCTCGACCCCGGGGAGTCCCGGCCTCTGCACTGGGCCGACG
GGAGCCTCGAGGCGACCCTCTCCGTCATGAACCGGTGCAGCTGCGTGCTG
GTGGTGCGGCAGTACGGCAGCGACGTCACCATGGAGCTCGACCCCGGGGA
GTCCCGGCCTCTGCACTGGGCCGACGGGAGCCTCGAGGCGACCCTCTCCG
TC
back to top