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Homology
BLAST of mRNA_L-elsbetiae_contig10073.117.1 vs. uniprot
Match: D7G1K8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1K8_ECTSI) HSP 1 Score: 340 bits (872), Expect = 5.630e-113 Identity = 221/317 (69.72%), Postives = 241/317 (76.03%), Query Frame = 3
Query: 72 MRSDIAAIIAFGLSFCTVVNAAPTFSCFDPPDEGQSNPLGEGMEDVVGSECCEALIDESDIFAGREVVWDPVNCNHGPGESPITEAPLCRAHDTDGCRFCRDSCVGFEGLCITCDEILGGLETS-SPTASPSSGLDTEFPETPAPFDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAPDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAAPTPVETEEPASDCVCVNTMSAEEQAVLERRSKNMVCDPTCSDGTDLIWNVLNCDYFALGQDCRACSLLCEDMGDGTWEDQDGFPCKPCSAV 1019
MRSDIA +IAFGL V+AAPT+SCFDPPDEGQ+NPLGEGMEDVV SECCEALIDESD+ A REV+WDPVNCNHGPG+ PI EA LCRAHDTDGCRFC DSC G+EGLCITC+E+L L S SPT SP +EFP TPAP I XX XXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXX P T E ASDC CVN++S EE AVL RRSKNMVCDPTCSD +DL+W V+NC+YFALGQ+CRACS LC+D GDGTW DQDGFPCKPCSA+
Sbjct: 1 MRSDIATVIAFGLLSVCPVSAAPTYSCFDPPDEGQTNPLGEGMEDVVESECCEALIDESDMMADREVIWDPVNCNHGPGDEPIAEAYLCRAHDTDGCRFCHDSCDGYEGLCITCEEVLEDLLNSDSPTPSPDFET-SEFPATPAPA-ILTAATEAPFGIFPATPAPVAPVXXPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPAPTAE-ASDCECVNSLSEEEMAVLTRRSKNMVCDPTCSDQSDLVWGVMNCNYFALGQNCRACSDLCDDQGDGTWLDQDGFPCKPCSAI 314
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | signal peptide |
Ec32 ortholog description | hypothetical protein |
Ec32 ortholog | Ec-07_001410.1 |
Exons | 4 |
Model size | 1080 |
Cds size | 951 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815239.6418598-UTR-L-elsbetiae_contig10073:2860..2918 | 1622815239.6418598-UTR-L-elsbetiae_contig10073:2860..2918 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig10073 2861..2918 - |
1691682789.6490765-UTR-L-elsbetiae_contig10073:2860..2918 | 1691682789.6490765-UTR-L-elsbetiae_contig10073:2860..2918 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig10073 2861..2918 - |
1622815239.710709-UTR-L-elsbetiae_contig10073:5850..5921 | 1622815239.710709-UTR-L-elsbetiae_contig10073:5850..5921 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig10073 5851..5921 - |
1691682789.7014678-UTR-L-elsbetiae_contig10073:5850..5921 | 1691682789.7014678-UTR-L-elsbetiae_contig10073:5850..5921 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig10073 5851..5921 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815239.6555176-CDS-L-elsbetiae_contig10073:2918..3049 | 1622815239.6555176-CDS-L-elsbetiae_contig10073:2918..3049 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10073 2919..3049 - |
1691682789.6592433-CDS-L-elsbetiae_contig10073:2918..3049 | 1691682789.6592433-CDS-L-elsbetiae_contig10073:2918..3049 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10073 2919..3049 - |
1622815239.6724398-CDS-L-elsbetiae_contig10073:3570..4066 | 1622815239.6724398-CDS-L-elsbetiae_contig10073:3570..4066 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10073 3571..4066 - |
1691682789.6692379-CDS-L-elsbetiae_contig10073:3570..4066 | 1691682789.6692379-CDS-L-elsbetiae_contig10073:3570..4066 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10073 3571..4066 - |
1622815239.6862981-CDS-L-elsbetiae_contig10073:4667..4815 | 1622815239.6862981-CDS-L-elsbetiae_contig10073:4667..4815 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10073 4668..4815 - |
1691682789.6791081-CDS-L-elsbetiae_contig10073:4667..4815 | 1691682789.6791081-CDS-L-elsbetiae_contig10073:4667..4815 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10073 4668..4815 - |
1622815239.697789-CDS-L-elsbetiae_contig10073:5674..5850 | 1622815239.697789-CDS-L-elsbetiae_contig10073:5674..5850 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10073 5675..5850 - |
1691682789.6890326-CDS-L-elsbetiae_contig10073:5674..5850 | 1691682789.6890326-CDS-L-elsbetiae_contig10073:5674..5850 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10073 5675..5850 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig10073.117.1 >prot_L-elsbetiae_contig10073.117.1 ID=prot_L-elsbetiae_contig10073.117.1|Name=mRNA_L-elsbetiae_contig10073.117.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=317bp
MRSDIAAIIAFGLSFCTVVNAAPTFSCFDPPDEGQSNPLGEGMEDVVGSE CCEALIDESDIFAGREVVWDPVNCNHGPGESPITEAPLCRAHDTDGCRFC RDSCVGFEGLCITCDEILGGLETSSPTASPSSGLDTEFPETPAPFDIFPE TPAPTTAAVVTPAPVTPAAATPAPATPAVVTPAPVTAAVAPDTPAPVTAA VAPDTPAPVTAAVAPDTPAPVTPAAPTPVETEEPASDCVCVNTMSAEEQA VLERRSKNMVCDPTCSDGTDLIWNVLNCDYFALGQDCRACSLLCEDMGDG TWEDQDGFPCKPCSAV* back to topmRNA from alignment at L-elsbetiae_contig10073:2861..5921- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig10073.117.1 ID=mRNA_L-elsbetiae_contig10073.117.1|Name=mRNA_L-elsbetiae_contig10073.117.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3061bp|location=Sequence derived from alignment at L-elsbetiae_contig10073:2861..5921- (Laminarionema elsbetiae ELsaHSoW15) CACTTCCTGCCTTACCGCATCCAAAGCAATCACCACCTCTTCAGCCACCC
TTCCAAGCACTCTCACACACCATGCGTTCTGATATCGCCGCGATCATCGC
CTTCGGGCTCAGCTTCTGCACCGTCGTCAACGCCGCCCCGACGTTCTCCT
GCTTCGATCCCCCGGATGAGGGCCAGTCTAACCCTCTCGGGGAGGGAATG
GAGGACGTCGTGGGGTCTGAGTGCTGTGAGGCACTCATCGACGAGAGGTG
AGTTGAATTGTATTACCAGTGTCACACAAACAAGCTGCAAGCTGGTTGCG
GTGCGTGTGGCAGGCAGTCTCGCTTGAGATCCGATGAGTGTGCAGTCCCA
GACCGTGCTTGTGCCACATATCTAGATATATGACCCGCACGCGTGAAGTC
AAACTGCTGCGTACTCATGGATGAGATAGCACGCGCGTGCACGGGATCGT
GTGTGTTGTGGTGCCTTTGCGTCCCACTACGAGCGCGCAGCTGGCGCAAC
TGCCATCGGCTTTGCAGCTTTTTCATGAGCTCGAGGAGAACGCGCACCGG
TTTTTGTATCCGACCAAACACGACCAAGTATGCAATCATCATGCAAACTA
TTTTTTACGTTACACAACTAGAGTAAGGTTAGCTGTTCTTGAGCAAAGGG
GACACGAAGAGAAAAAAGCGTTGCACACGCATGCATCAACAGAGCGAATA
CGATCCCACCGAATACGACTCCACCAGTAGCAAGCAGCTCGCACGCTGCA
ACCGACACCAAGCTCGCGTTAATCGTGTGCTCGGCCATGCAAGAAATATT
TCCTCGCATTACAAATGTGAACAGCAACGCCGGGGATCGAATGCCGTTTA
GGGGTACGACTCACCTGGTGCTTCCAAACGTCATCTTGTGCGGTTCATCC
ACTTTCTCCACCTGTTTTTCCGCCACCCCTTACCTACCTTTGTAGCAGGT
GCTTTTGTCATTTGTAAGCATGTGCTGTTGCCATTTGTAGCATGTGCTGG
GTGCCATTTGATCGTTGTTTGTTCGACAATACTACAATATAACCCTAACA
ACCAACTGTTCACCCACGCATTTGTTTTTGCTTTCCGTTTCGTTGCACAA
TTTCAGTGACATTTTTGCCGGCCGCGAGGTCGTCTGGGACCCCGTGAACT
GCAACCACGGGCCAGGCGAGAGCCCTATCACTGAGGCTCCTCTTTGCCGT
GCCCACGATACCGACGGCTGCCGCTTCTGCCGCGACTCGTGCGTCGGATT
TGAGGTATGTAACAGACATAGCCCACCAATGAACCCACAACCCGAGATAC
CTCGGGATACCTCTTTGCGCGGATTGAAAGAGGTGATACTGCTGTACTGC
CGTGGGATGAATAATTCAGTATCCGATCATGATGTTGCCCGCCTGCCAAG
CCGACGCCGTTTGCGGCTGCTTCTACCACTTCTAGCGCAAAGTTTGAGGA
GCAGGATCGCGAGCTCTTCCCTGCCGTCCTTGTTCGTCTTATTAACGCGT
GGTCGTTGCTGGTTTTATGTAGACTCCGACCATTGTTATCTGGGCTTGAC
AAAACAAATTTGGAAAAAGTTAGACCGCTGTTTGCTCCGCCAAAAGACTC
AAACGAACGAGGGCACAAGCTTATATGTTTTTCTGAACCCGCATGAAATT
AGATGGTGGCAAAAACTGCTGTGTAATTGTTGTTTGCGGGCCCTTATTTC
CACGTAGAGAATCTGCGGTTGAGTATCGCATCGGTGTTTGTAGTCTAGTC
TCTTCCTGCTTGGGTCATGATATAAGGGCACAAATCCCCCTGCAAAATAT
CCTAACACGCCTCCCCACCGTCCTAACCCTCCCCTTACACCCAAAATCTC
GACAGGGTCTCTGCATCACCTGCGACGAGATCCTGGGTGGCCTGGAGACC
AGCAGCCCCACAGCTTCCCCGTCCAGTGGCCTGGACACCGAGTTCCCGGA
AACCCCCGCCCCCTTCGACATCTTCCCGGAGACGCCCGCCCCGACCACTG
CGGCCGTGGTCACCCCGGCCCCCGTCACCCCAGCCGCCGCGACCCCGGCC
CCCGCCACCCCGGCCGTGGTCACCCCAGCCCCCGTCACCGCGGCCGTCGC
CCCCGACACTCCGGCCCCCGTCACCGCAGCCGTCGCCCCCGACACCCCGG
CCCCCGTCACCGCAGCCGTCGCCCCCGACACCCCGGCCCCCGTCACCCCC
GCCGCCCCGACCCCCGTTGAAACCGAAGAGCCTGCCTCGGACTGCGTGTG
CGTCAACACCATGTCGGCGGAGGAGCAGGCCGTGCTTGAGCGACGGTCCA
AGAATATGGTATGCGACCCCACCTGCTCCGACGGCACCGACCTCATCTGG
AGTGAGTCAATTTTCTGCGCCTTTTGGATTGGTTTTGATTGTGTGATCCT
TGCGTCTTGCGTGGATATACCGCCAGCTAGCAATAGAGAGACCTCGCTTA
GCGACAACTTCGCAGCTGCAGCGGCCGCATTAGTAACAGCAGGATTGCAA
CACCGCCGTCTTCGAGGCGGTAATAAAGAGTGCTTGTTGGGACCCACTCA
AAGCCACATACTCGTACATCAAAACCCACCGCCTTCCAGTGCTTTGACTT
TTTCTGTTTCGTGCAACGCGCCCAGTGCGAACTCTGCCAAGTGCCCCGAT
GTTTCATACATCTGGTCTTTGCCGAAGCTCAGCTGCCAAACCAAAATTGA
GTTGCGTGAGTCATAGATACCTAGCGTGGCAACATATCAAGCACAACCCC
CGGCGCTTGCACGAGTCAAGTCACCTATCAACCCTCACTCGCCATACGGA
AATCCAACACCCGTCCTAACCACCGTCGTCGCCCTCTGCTTCCTGCCGTG
CCCCCACGCCTCCCTTGTCTAGATGTGCTGAACTGCGACTACTTCGCGCT
CGGCCAAGACTGCCGCGCGTGCAGCCTCCTCTGCGAAGACATGGGAGACG
GCACCTGGGAGGACCAGGACGGGTTCCCCTGCAAGCCCTGCTCCGCTGTC
TAAGAGGACCTGGCGGCCAACTTCAGTCACCATCACCTAGTTTAGAAGTG
CGCGGCGGGGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig10073:2861..5921- >mRNA_L-elsbetiae_contig10073.117.1 ID=mRNA_L-elsbetiae_contig10073.117.1|Name=mRNA_L-elsbetiae_contig10073.117.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1902bp|location=Sequence derived from alignment at L-elsbetiae_contig10073:2861..5921- (Laminarionema elsbetiae ELsaHSoW15) ATGCGTTCTGATATCGCCGCGATCATCGCCTTCGGGCTCAGCTTCTGCAC CGTCGTCAACGCCGCCCCGACGTTCTCCTGCTTCGATCCCCCGGATGAGG GCCAGTCTAACCCTCTCGGGGAGGGAATGGAGGACGTCGTGGGGTCTGAG TGCTGTGAGGCACTCATCGACGAGAGATGCGTTCTGATATCGCCGCGATC ATCGCCTTCGGGCTCAGCTTCTGCACCGTCGTCAACGCCGCCCCGACGTT CTCCTGCTTCGATCCCCCGGATGAGGGCCAGTCTAACCCTCTCGGGGAGG GAATGGAGGACGTCGTGGGGTCTGAGTGCTGTGAGGCACTCATCGACGAG AGTGACATTTTTGCCGGCCGCGAGGTCGTCTGGGACCCCGTGAACTGCAA CCACGGGCCAGGCGAGAGCCCTATCACTGAGGCTCCTCTTTGCCGTGCCC ACGATACCGACGGCTGCCGCTTCTGCCGCGACTCGTGCGTCGGATTTGAG TGACATTTTTGCCGGCCGCGAGGTCGTCTGGGACCCCGTGAACTGCAACC ACGGGCCAGGCGAGAGCCCTATCACTGAGGCTCCTCTTTGCCGTGCCCAC GATACCGACGGCTGCCGCTTCTGCCGCGACTCGTGCGTCGGATTTGAGGG TCTCTGCATCACCTGCGACGAGATCCTGGGTGGCCTGGAGACCAGCAGCC CCACAGCTTCCCCGTCCAGTGGCCTGGACACCGAGTTCCCGGAAACCCCC GCCCCCTTCGACATCTTCCCGGAGACGCCCGCCCCGACCACTGCGGCCGT GGTCACCCCGGCCCCCGTCACCCCAGCCGCCGCGACCCCGGCCCCCGCCA CCCCGGCCGTGGTCACCCCAGCCCCCGTCACCGCGGCCGTCGCCCCCGAC ACTCCGGCCCCCGTCACCGCAGCCGTCGCCCCCGACACCCCGGCCCCCGT CACCGCAGCCGTCGCCCCCGACACCCCGGCCCCCGTCACCCCCGCCGCCC CGACCCCCGTTGAAACCGAAGAGCCTGCCTCGGACTGCGTGTGCGTCAAC ACCATGTCGGCGGAGGAGCAGGCCGTGCTTGAGCGACGGTCCAAGAATAT GGTATGCGACCCCACCTGCTCCGACGGCACCGACCTCATCTGGAGGTCTC TGCATCACCTGCGACGAGATCCTGGGTGGCCTGGAGACCAGCAGCCCCAC AGCTTCCCCGTCCAGTGGCCTGGACACCGAGTTCCCGGAAACCCCCGCCC CCTTCGACATCTTCCCGGAGACGCCCGCCCCGACCACTGCGGCCGTGGTC ACCCCGGCCCCCGTCACCCCAGCCGCCGCGACCCCGGCCCCCGCCACCCC GGCCGTGGTCACCCCAGCCCCCGTCACCGCGGCCGTCGCCCCCGACACTC CGGCCCCCGTCACCGCAGCCGTCGCCCCCGACACCCCGGCCCCCGTCACC GCAGCCGTCGCCCCCGACACCCCGGCCCCCGTCACCCCCGCCGCCCCGAC CCCCGTTGAAACCGAAGAGCCTGCCTCGGACTGCGTGTGCGTCAACACCA TGTCGGCGGAGGAGCAGGCCGTGCTTGAGCGACGGTCCAAGAATATGGTA TGCGACCCCACCTGCTCCGACGGCACCGACCTCATCTGGAATGTGCTGAA CTGCGACTACTTCGCGCTCGGCCAAGACTGCCGCGCGTGCAGCCTCCTCT GCGAAGACATGGGAGACGGCACCTGGGAGGACCAGGACGGGTTCCCCTGC AAGCCCTGCTCCGCTGTCTAAATGTGCTGAACTGCGACTACTTCGCGCTC GGCCAAGACTGCCGCGCGTGCAGCCTCCTCTGCGAAGACATGGGAGACGG CACCTGGGAGGACCAGGACGGGTTCCCCTGCAAGCCCTGCTCCGCTGTCT AA back to top
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