mRNA_L-elsbetiae_contig10073.117.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10073.117.1
Unique NamemRNA_L-elsbetiae_contig10073.117.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10073.117.1 vs. uniprot
Match: D7G1K8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1K8_ECTSI)

HSP 1 Score: 340 bits (872), Expect = 5.630e-113
Identity = 221/317 (69.72%), Postives = 241/317 (76.03%), Query Frame = 3 
Query:   72 MRSDIAAIIAFGLSFCTVVNAAPTFSCFDPPDEGQSNPLGEGMEDVVGSECCEALIDESDIFAGREVVWDPVNCNHGPGESPITEAPLCRAHDTDGCRFCRDSCVGFEGLCITCDEILGGLETS-SPTASPSSGLDTEFPETPAPFDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAPDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAAPTPVETEEPASDCVCVNTMSAEEQAVLERRSKNMVCDPTCSDGTDLIWNVLNCDYFALGQDCRACSLLCEDMGDGTWEDQDGFPCKPCSAV 1019
            MRSDIA +IAFGL     V+AAPT+SCFDPPDEGQ+NPLGEGMEDVV SECCEALIDESD+ A REV+WDPVNCNHGPG+ PI EA LCRAHDTDGCRFC DSC G+EGLCITC+E+L  L  S SPT SP     +EFP TPAP  I                      XX  XXXXXXXXXXXXXX      XXXXXXXXXXXXXXXXXXXXXXXXXXXXX     P  T E ASDC CVN++S EE AVL RRSKNMVCDPTCSD +DL+W V+NC+YFALGQ+CRACS LC+D GDGTW DQDGFPCKPCSA+
Sbjct:    1 MRSDIATVIAFGLLSVCPVSAAPTYSCFDPPDEGQTNPLGEGMEDVVESECCEALIDESDMMADREVIWDPVNCNHGPGDEPIAEAYLCRAHDTDGCRFCHDSCDGYEGLCITCEEVLEDLLNSDSPTPSPDFET-SEFPATPAPA-ILTAATEAPFGIFPATPAPVAPVXXPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPAPTAE-ASDCECVNSLSEEEMAVLTRRSKNMVCDPTCSDQSDLVWGVMNCNYFALGQNCRACSDLCDDQGDGTWLDQDGFPCKPCSAI 314
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10073.117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1K8_ECTSI5.630e-11369.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10073contigL-elsbetiae_contig10073:2861..5921 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_001410.1
Exons4
Model size1080
Cds size951
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10073.117.1prot_L-elsbetiae_contig10073.117.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10073 2919..5850 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815239.6418598-UTR-L-elsbetiae_contig10073:2860..29181622815239.6418598-UTR-L-elsbetiae_contig10073:2860..2918Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10073 2861..2918 -
1691682789.6490765-UTR-L-elsbetiae_contig10073:2860..29181691682789.6490765-UTR-L-elsbetiae_contig10073:2860..2918Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10073 2861..2918 -
1622815239.710709-UTR-L-elsbetiae_contig10073:5850..59211622815239.710709-UTR-L-elsbetiae_contig10073:5850..5921Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10073 5851..5921 -
1691682789.7014678-UTR-L-elsbetiae_contig10073:5850..59211691682789.7014678-UTR-L-elsbetiae_contig10073:5850..5921Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10073 5851..5921 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815239.6555176-CDS-L-elsbetiae_contig10073:2918..30491622815239.6555176-CDS-L-elsbetiae_contig10073:2918..3049Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10073 2919..3049 -
1691682789.6592433-CDS-L-elsbetiae_contig10073:2918..30491691682789.6592433-CDS-L-elsbetiae_contig10073:2918..3049Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10073 2919..3049 -
1622815239.6724398-CDS-L-elsbetiae_contig10073:3570..40661622815239.6724398-CDS-L-elsbetiae_contig10073:3570..4066Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10073 3571..4066 -
1691682789.6692379-CDS-L-elsbetiae_contig10073:3570..40661691682789.6692379-CDS-L-elsbetiae_contig10073:3570..4066Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10073 3571..4066 -
1622815239.6862981-CDS-L-elsbetiae_contig10073:4667..48151622815239.6862981-CDS-L-elsbetiae_contig10073:4667..4815Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10073 4668..4815 -
1691682789.6791081-CDS-L-elsbetiae_contig10073:4667..48151691682789.6791081-CDS-L-elsbetiae_contig10073:4667..4815Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10073 4668..4815 -
1622815239.697789-CDS-L-elsbetiae_contig10073:5674..58501622815239.697789-CDS-L-elsbetiae_contig10073:5674..5850Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10073 5675..5850 -
1691682789.6890326-CDS-L-elsbetiae_contig10073:5674..58501691682789.6890326-CDS-L-elsbetiae_contig10073:5674..5850Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10073 5675..5850 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10073.117.1

>prot_L-elsbetiae_contig10073.117.1 ID=prot_L-elsbetiae_contig10073.117.1|Name=mRNA_L-elsbetiae_contig10073.117.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=317bp
MRSDIAAIIAFGLSFCTVVNAAPTFSCFDPPDEGQSNPLGEGMEDVVGSE
CCEALIDESDIFAGREVVWDPVNCNHGPGESPITEAPLCRAHDTDGCRFC
RDSCVGFEGLCITCDEILGGLETSSPTASPSSGLDTEFPETPAPFDIFPE
TPAPTTAAVVTPAPVTPAAATPAPATPAVVTPAPVTAAVAPDTPAPVTAA
VAPDTPAPVTAAVAPDTPAPVTPAAPTPVETEEPASDCVCVNTMSAEEQA
VLERRSKNMVCDPTCSDGTDLIWNVLNCDYFALGQDCRACSLLCEDMGDG
TWEDQDGFPCKPCSAV*
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mRNA from alignment at L-elsbetiae_contig10073:2861..5921-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10073.117.1 ID=mRNA_L-elsbetiae_contig10073.117.1|Name=mRNA_L-elsbetiae_contig10073.117.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3061bp|location=Sequence derived from alignment at L-elsbetiae_contig10073:2861..5921- (Laminarionema elsbetiae ELsaHSoW15)
CACTTCCTGCCTTACCGCATCCAAAGCAATCACCACCTCTTCAGCCACCC
TTCCAAGCACTCTCACACACCATGCGTTCTGATATCGCCGCGATCATCGC
CTTCGGGCTCAGCTTCTGCACCGTCGTCAACGCCGCCCCGACGTTCTCCT
GCTTCGATCCCCCGGATGAGGGCCAGTCTAACCCTCTCGGGGAGGGAATG
GAGGACGTCGTGGGGTCTGAGTGCTGTGAGGCACTCATCGACGAGAGGTG
AGTTGAATTGTATTACCAGTGTCACACAAACAAGCTGCAAGCTGGTTGCG
GTGCGTGTGGCAGGCAGTCTCGCTTGAGATCCGATGAGTGTGCAGTCCCA
GACCGTGCTTGTGCCACATATCTAGATATATGACCCGCACGCGTGAAGTC
AAACTGCTGCGTACTCATGGATGAGATAGCACGCGCGTGCACGGGATCGT
GTGTGTTGTGGTGCCTTTGCGTCCCACTACGAGCGCGCAGCTGGCGCAAC
TGCCATCGGCTTTGCAGCTTTTTCATGAGCTCGAGGAGAACGCGCACCGG
TTTTTGTATCCGACCAAACACGACCAAGTATGCAATCATCATGCAAACTA
TTTTTTACGTTACACAACTAGAGTAAGGTTAGCTGTTCTTGAGCAAAGGG
GACACGAAGAGAAAAAAGCGTTGCACACGCATGCATCAACAGAGCGAATA
CGATCCCACCGAATACGACTCCACCAGTAGCAAGCAGCTCGCACGCTGCA
ACCGACACCAAGCTCGCGTTAATCGTGTGCTCGGCCATGCAAGAAATATT
TCCTCGCATTACAAATGTGAACAGCAACGCCGGGGATCGAATGCCGTTTA
GGGGTACGACTCACCTGGTGCTTCCAAACGTCATCTTGTGCGGTTCATCC
ACTTTCTCCACCTGTTTTTCCGCCACCCCTTACCTACCTTTGTAGCAGGT
GCTTTTGTCATTTGTAAGCATGTGCTGTTGCCATTTGTAGCATGTGCTGG
GTGCCATTTGATCGTTGTTTGTTCGACAATACTACAATATAACCCTAACA
ACCAACTGTTCACCCACGCATTTGTTTTTGCTTTCCGTTTCGTTGCACAA
TTTCAGTGACATTTTTGCCGGCCGCGAGGTCGTCTGGGACCCCGTGAACT
GCAACCACGGGCCAGGCGAGAGCCCTATCACTGAGGCTCCTCTTTGCCGT
GCCCACGATACCGACGGCTGCCGCTTCTGCCGCGACTCGTGCGTCGGATT
TGAGGTATGTAACAGACATAGCCCACCAATGAACCCACAACCCGAGATAC
CTCGGGATACCTCTTTGCGCGGATTGAAAGAGGTGATACTGCTGTACTGC
CGTGGGATGAATAATTCAGTATCCGATCATGATGTTGCCCGCCTGCCAAG
CCGACGCCGTTTGCGGCTGCTTCTACCACTTCTAGCGCAAAGTTTGAGGA
GCAGGATCGCGAGCTCTTCCCTGCCGTCCTTGTTCGTCTTATTAACGCGT
GGTCGTTGCTGGTTTTATGTAGACTCCGACCATTGTTATCTGGGCTTGAC
AAAACAAATTTGGAAAAAGTTAGACCGCTGTTTGCTCCGCCAAAAGACTC
AAACGAACGAGGGCACAAGCTTATATGTTTTTCTGAACCCGCATGAAATT
AGATGGTGGCAAAAACTGCTGTGTAATTGTTGTTTGCGGGCCCTTATTTC
CACGTAGAGAATCTGCGGTTGAGTATCGCATCGGTGTTTGTAGTCTAGTC
TCTTCCTGCTTGGGTCATGATATAAGGGCACAAATCCCCCTGCAAAATAT
CCTAACACGCCTCCCCACCGTCCTAACCCTCCCCTTACACCCAAAATCTC
GACAGGGTCTCTGCATCACCTGCGACGAGATCCTGGGTGGCCTGGAGACC
AGCAGCCCCACAGCTTCCCCGTCCAGTGGCCTGGACACCGAGTTCCCGGA
AACCCCCGCCCCCTTCGACATCTTCCCGGAGACGCCCGCCCCGACCACTG
CGGCCGTGGTCACCCCGGCCCCCGTCACCCCAGCCGCCGCGACCCCGGCC
CCCGCCACCCCGGCCGTGGTCACCCCAGCCCCCGTCACCGCGGCCGTCGC
CCCCGACACTCCGGCCCCCGTCACCGCAGCCGTCGCCCCCGACACCCCGG
CCCCCGTCACCGCAGCCGTCGCCCCCGACACCCCGGCCCCCGTCACCCCC
GCCGCCCCGACCCCCGTTGAAACCGAAGAGCCTGCCTCGGACTGCGTGTG
CGTCAACACCATGTCGGCGGAGGAGCAGGCCGTGCTTGAGCGACGGTCCA
AGAATATGGTATGCGACCCCACCTGCTCCGACGGCACCGACCTCATCTGG
AGTGAGTCAATTTTCTGCGCCTTTTGGATTGGTTTTGATTGTGTGATCCT
TGCGTCTTGCGTGGATATACCGCCAGCTAGCAATAGAGAGACCTCGCTTA
GCGACAACTTCGCAGCTGCAGCGGCCGCATTAGTAACAGCAGGATTGCAA
CACCGCCGTCTTCGAGGCGGTAATAAAGAGTGCTTGTTGGGACCCACTCA
AAGCCACATACTCGTACATCAAAACCCACCGCCTTCCAGTGCTTTGACTT
TTTCTGTTTCGTGCAACGCGCCCAGTGCGAACTCTGCCAAGTGCCCCGAT
GTTTCATACATCTGGTCTTTGCCGAAGCTCAGCTGCCAAACCAAAATTGA
GTTGCGTGAGTCATAGATACCTAGCGTGGCAACATATCAAGCACAACCCC
CGGCGCTTGCACGAGTCAAGTCACCTATCAACCCTCACTCGCCATACGGA
AATCCAACACCCGTCCTAACCACCGTCGTCGCCCTCTGCTTCCTGCCGTG
CCCCCACGCCTCCCTTGTCTAGATGTGCTGAACTGCGACTACTTCGCGCT
CGGCCAAGACTGCCGCGCGTGCAGCCTCCTCTGCGAAGACATGGGAGACG
GCACCTGGGAGGACCAGGACGGGTTCCCCTGCAAGCCCTGCTCCGCTGTC
TAAGAGGACCTGGCGGCCAACTTCAGTCACCATCACCTAGTTTAGAAGTG
CGCGGCGGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10073:2861..5921-

>mRNA_L-elsbetiae_contig10073.117.1 ID=mRNA_L-elsbetiae_contig10073.117.1|Name=mRNA_L-elsbetiae_contig10073.117.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1902bp|location=Sequence derived from alignment at L-elsbetiae_contig10073:2861..5921- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGTTCTGATATCGCCGCGATCATCGCCTTCGGGCTCAGCTTCTGCAC
CGTCGTCAACGCCGCCCCGACGTTCTCCTGCTTCGATCCCCCGGATGAGG
GCCAGTCTAACCCTCTCGGGGAGGGAATGGAGGACGTCGTGGGGTCTGAG
TGCTGTGAGGCACTCATCGACGAGAGATGCGTTCTGATATCGCCGCGATC
ATCGCCTTCGGGCTCAGCTTCTGCACCGTCGTCAACGCCGCCCCGACGTT
CTCCTGCTTCGATCCCCCGGATGAGGGCCAGTCTAACCCTCTCGGGGAGG
GAATGGAGGACGTCGTGGGGTCTGAGTGCTGTGAGGCACTCATCGACGAG
AGTGACATTTTTGCCGGCCGCGAGGTCGTCTGGGACCCCGTGAACTGCAA
CCACGGGCCAGGCGAGAGCCCTATCACTGAGGCTCCTCTTTGCCGTGCCC
ACGATACCGACGGCTGCCGCTTCTGCCGCGACTCGTGCGTCGGATTTGAG
TGACATTTTTGCCGGCCGCGAGGTCGTCTGGGACCCCGTGAACTGCAACC
ACGGGCCAGGCGAGAGCCCTATCACTGAGGCTCCTCTTTGCCGTGCCCAC
GATACCGACGGCTGCCGCTTCTGCCGCGACTCGTGCGTCGGATTTGAGGG
TCTCTGCATCACCTGCGACGAGATCCTGGGTGGCCTGGAGACCAGCAGCC
CCACAGCTTCCCCGTCCAGTGGCCTGGACACCGAGTTCCCGGAAACCCCC
GCCCCCTTCGACATCTTCCCGGAGACGCCCGCCCCGACCACTGCGGCCGT
GGTCACCCCGGCCCCCGTCACCCCAGCCGCCGCGACCCCGGCCCCCGCCA
CCCCGGCCGTGGTCACCCCAGCCCCCGTCACCGCGGCCGTCGCCCCCGAC
ACTCCGGCCCCCGTCACCGCAGCCGTCGCCCCCGACACCCCGGCCCCCGT
CACCGCAGCCGTCGCCCCCGACACCCCGGCCCCCGTCACCCCCGCCGCCC
CGACCCCCGTTGAAACCGAAGAGCCTGCCTCGGACTGCGTGTGCGTCAAC
ACCATGTCGGCGGAGGAGCAGGCCGTGCTTGAGCGACGGTCCAAGAATAT
GGTATGCGACCCCACCTGCTCCGACGGCACCGACCTCATCTGGAGGTCTC
TGCATCACCTGCGACGAGATCCTGGGTGGCCTGGAGACCAGCAGCCCCAC
AGCTTCCCCGTCCAGTGGCCTGGACACCGAGTTCCCGGAAACCCCCGCCC
CCTTCGACATCTTCCCGGAGACGCCCGCCCCGACCACTGCGGCCGTGGTC
ACCCCGGCCCCCGTCACCCCAGCCGCCGCGACCCCGGCCCCCGCCACCCC
GGCCGTGGTCACCCCAGCCCCCGTCACCGCGGCCGTCGCCCCCGACACTC
CGGCCCCCGTCACCGCAGCCGTCGCCCCCGACACCCCGGCCCCCGTCACC
GCAGCCGTCGCCCCCGACACCCCGGCCCCCGTCACCCCCGCCGCCCCGAC
CCCCGTTGAAACCGAAGAGCCTGCCTCGGACTGCGTGTGCGTCAACACCA
TGTCGGCGGAGGAGCAGGCCGTGCTTGAGCGACGGTCCAAGAATATGGTA
TGCGACCCCACCTGCTCCGACGGCACCGACCTCATCTGGAATGTGCTGAA
CTGCGACTACTTCGCGCTCGGCCAAGACTGCCGCGCGTGCAGCCTCCTCT
GCGAAGACATGGGAGACGGCACCTGGGAGGACCAGGACGGGTTCCCCTGC
AAGCCCTGCTCCGCTGTCTAAATGTGCTGAACTGCGACTACTTCGCGCTC
GGCCAAGACTGCCGCGCGTGCAGCCTCCTCTGCGAAGACATGGGAGACGG
CACCTGGGAGGACCAGGACGGGTTCCCCTGCAAGCCCTGCTCCGCTGTCT
AA
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