prot_L-elsbetiae_contig10073.117.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig10073.117.1
Unique Nameprot_L-elsbetiae_contig10073.117.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length317
Homology
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BLAST of mRNA_L-elsbetiae_contig10073.117.1 vs. uniprot
Match: D7G1K8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1K8_ECTSI)

HSP 1 Score: 341 bits (874), Expect = 6.060e-114
Identity = 221/317 (69.72%), Postives = 241/317 (76.03%), Query Frame = 0 
Query:    1 MRSDIAAIIAFGLSFCTVVNAAPTFSCFDPPDEGQSNPLGEGMEDVVGSECCEALIDESDIFAGREVVWDPVNCNHGPGESPITEAPLCRAHDTDGCRFCRDSCVGFEGLCITCDEILGGLETS-SPTASPSSGLDTEFPETPAPFDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAPDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAAPTPVETEEPASDCVCVNTMSAEEQAVLERRSKNMVCDPTCSDGTDLIWNVLNCDYFALGQDCRACSLLCEDMGDGTWEDQDGFPCKPCSAV 316
            MRSDIA +IAFGL     V+AAPT+SCFDPPDEGQ+NPLGEGMEDVV SECCEALIDESD+ A REV+WDPVNCNHGPG+ PI EA LCRAHDTDGCRFC DSC G+EGLCITC+E+L  L  S SPT SP     +EFP TPAP  I                      XX  XXXXXXXXXXXXXX      XXXXXXXXXXXXXXXXXXXXXXXXXXXXX     P  T E ASDC CVN++S EE AVL RRSKNMVCDPTCSD +DL+W V+NC+YFALGQ+CRACS LC+D GDGTW DQDGFPCKPCSA+
Sbjct:    1 MRSDIATVIAFGLLSVCPVSAAPTYSCFDPPDEGQTNPLGEGMEDVVESECCEALIDESDMMADREVIWDPVNCNHGPGDEPIAEAYLCRAHDTDGCRFCHDSCDGYEGLCITCEEVLEDLLNSDSPTPSPDFET-SEFPATPAPA-ILTAATEAPFGIFPATPAPVAPVXXPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPAPTAE-ASDCECVNSLSEEEMAVLTRRSKNMVCDPTCSDQSDLVWGVMNCNYFALGQNCRACSDLCDDQGDGTWLDQDGFPCKPCSAI 314
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10073.117.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1K8_ECTSI6.060e-11469.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..316
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..21
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.797

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10073contigL-elsbetiae_contig10073:2919..5850 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10073.117.1mRNA_L-elsbetiae_contig10073.117.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig10073 2861..5921 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig10073.117.1 ID=prot_L-elsbetiae_contig10073.117.1|Name=mRNA_L-elsbetiae_contig10073.117.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=317bp
MRSDIAAIIAFGLSFCTVVNAAPTFSCFDPPDEGQSNPLGEGMEDVVGSE
CCEALIDESDIFAGREVVWDPVNCNHGPGESPITEAPLCRAHDTDGCRFC
RDSCVGFEGLCITCDEILGGLETSSPTASPSSGLDTEFPETPAPFDIFPE
TPAPTTAAVVTPAPVTPAAATPAPATPAVVTPAPVTAAVAPDTPAPVTAA
VAPDTPAPVTAAVAPDTPAPVTPAAPTPVETEEPASDCVCVNTMSAEEQA
VLERRSKNMVCDPTCSDGTDLIWNVLNCDYFALGQDCRACSLLCEDMGDG
TWEDQDGFPCKPCSAV*
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