mRNA_L-elsbetiae_contig9304.18305.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9304.18305.1
Unique NamemRNA_L-elsbetiae_contig9304.18305.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig9304.18305.1 vs. uniprot
Match: D7FYM6_ECTSI (Thioredoxin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYM6_ECTSI)

HSP 1 Score: 419 bits (1076), Expect = 2.840e-146
Identity = 205/260 (78.85%), Postives = 237/260 (91.15%), Query Frame = 2
Query:    2 RRWMRFVHAHYVVNASMMLSYAVLRYFMSSPHLTTKETWTGFSQETEVLGLAAATLLSKYRKMATFDELIDRLFFLGKAAVAVLLFFIGVPHMVSYLIIWTACSLVVPYPRFLFPPEVAFLSPGEFQSMVRSPS-QAPGQRVAWLVMFYADWCSASHNLKPMFGALARRYADKNRRFAVVDVLAHPEIAEDLNISTAGTSKQIPTLALFASGREICRLPTFASDGRVVRARMDEGGVTKYFELDKEFRTASYSRRG-RGK 775
            RRW RFVH HYVVNA+++L+Y ++R++MS+P LT++ TWTGFSQETE++GLA ATL+SKYRKMATFDE + R F +GKAAVAVLLFF+G+PHMV YLI+WTACSLVVPYPRF+ P EV+ L+PGEFQSMVRS S QAPG+RVAWLVMF+ADWCS+SHNL+PMFGALARRYADKNRRFAVVD++AHPE AEDLNI+TAGTSKQ+PTLALFASGRE+CRLPTFASDG VVRARMDE GV  YFELD+EFRT SYSRRG RGK
Sbjct:   10 RRWARFVHLHYVVNAALVLNYGIVRWYMSAPRLTSQATWTGFSQETEIIGLATATLVSKYRKMATFDEFLARFFVIGKAAVAVLLFFVGIPHMVWYLILWTACSLVVPYPRFVLPSEVSTLNPGEFQSMVRSSSAQAPGERVAWLVMFHADWCSSSHNLQPMFGALARRYADKNRRFAVVDIVAHPETAEDLNINTAGTSKQLPTLALFASGREVCRLPTFASDGSVVRARMDERGVINYFELDQEFRTTSYSRRGLRGK 269          
BLAST of mRNA_L-elsbetiae_contig9304.18305.1 vs. uniprot
Match: A0A6H5JZG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZG0_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 2.400e-46
Identity = 87/133 (65.41%), Postives = 100/133 (75.19%), Query Frame = 2
Query:  140 EVLGLAAATLLSKYRKMATFDELIDRLFFLGKAAVAVLLFFIGVPHMVSYLIIWTACSLVVPYPRFLFPPEVAFLSPGEFQSMVRSPS-QAPGQRVAWLVMFYADWCSASHNLKPMFGALARRYADKNRRFAV 535
            EV+GLA ATL+SKYRKMATFDE + R F +GKAAVAVLLFF+G+PHMV YLI+WT               EV+ L+PGEFQSMVRS S QAPG RVAWLVMF+ADWCS+S NL+PMFGALARR      RF +
Sbjct:    2 EVIGLATATLVSKYRKMATFDEFLARFFVIGKAAVAVLLFFVGIPHMVWYLILWT---------------EVSTLNPGEFQSMVRSSSAQAPGDRVAWLVMFHADWCSSSRNLQPMFGALARRCVRCGFRFMI 119          
BLAST of mRNA_L-elsbetiae_contig9304.18305.1 vs. uniprot
Match: A0A6V1S3B1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S3B1_HETAK)

HSP 1 Score: 159 bits (402), Expect = 4.160e-44
Identity = 94/253 (37.15%), Postives = 142/253 (56.13%), Query Frame = 2
Query:   14 RFVHAHYVVNASMMLSYAVLRYFMSSPH-LTTKETWTGFSQETEVLGLAAATLLSKYRKMATFDELIDRLFFLGKAAVAVLLFFIGVPHMVSYLIIWTACSLVVPYPRFLFPPEVAFLSPGEFQSMVRSPSQAPGQRVAWLVMFYADWCSASHNLKPMFGALARRYADKNR-----RFAVVDVLAHPEIAEDLNISTAGTSKQIPTLALFASGREICRLPTFASDGRVVRARMDEGGVTKYFELDKEFRTASY 754
            RF+H +Y+ N  ++L Y ++R+    P  L    T  GF++E E++ LA   L+ K+ + AT D+ +D++F  GK A   LLF+I  P    YL+I    +L V  P  +    +  +  G FQ +V++       R A LVMF+ DWC      +P+F  +A R+          RFA VD++  PE+A++  +  +GTSKQ+PT  LF  G E+ R+PTF SDG+VV+   D  G+ K+FELDK+F   SY
Sbjct:    7 RFLHPYYLTNFLLLLIYPLVRFTYGIPDSLRDTRTMLGFTKEVEMILLAFVALIVKFARAATLDQYLDKVFLFGKMANGALLFYINRPFATGYLVI-AFVTLAVLNPPKILNLSIESMGMGTFQEVVKN---CRDPRRAALVMFHCDWCKDCTLTEPIFSRIADRFRGGGXXXGPYRFAKVDLVRFPELADEYAVDVSGTSKQLPTFILFYKGEEVKRMPTFKSDGQVVKTGFDVKGMMKWFELDKDFTQTSY 255          
BLAST of mRNA_L-elsbetiae_contig9304.18305.1 vs. uniprot
Match: A0A6S8C4H8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8C4H8_9STRA)

HSP 1 Score: 120 bits (301), Expect = 8.520e-29
Identity = 79/250 (31.60%), Postives = 132/250 (52.80%), Query Frame = 2
Query:   14 RFVHAHYVVNASMMLSYAVLRYFMSSPHLTTKE-TWTGFSQETEVLGLAAATLLSKYRKMATFDELIDRLFFLGKAAVAVLLFFIGVPHMVS-YLIIWTACSLVVPYPRFLFPPEVAFLSPGEF-QSMVRSPSQAPGQRVAWLVMFYADWCSASHNLKPMFGALARRYADKNRRFAVVDVLAHPEIAEDLNISTAGTSKQIPTLALFASGREICRLPTFASDGRVVRARMDEGGVTKYFELDKEFRTASY 754
            ++   +Y+ NAS++LS+ +LR F+       ++ TW   S+E EV  L    LL+K R+ ++  E + R+F  GK A+ + LF  G       YL I +   +VVP P+F     V  L    F ++++R+P         ++V   ADWC +  ++ P+F +LA +Y  + R+F  VDV  +P +A    I+T  T+KQ+PT  LF  G+E  RLP F  D ++V+ +     +  +  L+K  + A +
Sbjct:   28 QWTQCYYLSNASVLLSWIILRSFIPGREFLDEQGTWFA-SKEREVYMLVGFGLLTKARRASSTHEYLFRIFLYGKIAILLCLFRSGSLATTGLYLCILSFLYVVVPIPKFAGDELVIKLDTARFTETVLRTPHPDDKSAPIYIVALVADWCESCTHIAPIFCSLAAQYTSRRRKFIAVDVGHNPNVARRFQINTTFTTKQLPTFILFFHGQEKRRLPYFGDDLKIVKTKFTRDSLESFLLLNKPVKEAVF 276          
BLAST of mRNA_L-elsbetiae_contig9304.18305.1 vs. uniprot
Match: A0A1X6P1N4_PORUM (Thioredoxin domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P1N4_PORUM)

HSP 1 Score: 100 bits (248), Expect = 1.980e-21
Identity = 68/246 (27.64%), Postives = 122/246 (49.59%), Query Frame = 2
Query:   14 RFVHAHYVVNASMMLSYAVLRYFMSSPHLTTKETWTGFSQETEVLGLAAATLLSKYRKMATFDELIDRLFFLGKAAVAVLLFFIGVPHMVSYLIIWTACSLVVPYPRFLFPPEVAFLSPGEFQSMVRSPSQAPGQRVAWLVMFYADWCSASHNLKPMFGALARRYADKNRRFAVVDVLAHPEIAEDLNISTAGTSKQIPTLALFASGREICRLPTFASDG-RVVRARMDEGGVTKYFELDKEFRTA 748
            RF+  +Y++NA ++ ++ + R       L T +   GF++E+++   A    +++     T D  +  +    + A+ V+LFF+       ++I++T   LV P PR   P  V+ L+   F   V + ++     V WL   +A W      L P+   L   Y     R+A +D     ++A DL++STA TS+Q+PT+ +F+ G+E+ RLPT   DG ++   +M    + +   LD+  R A
Sbjct:   13 RFLSPYYLLNAILIGAFVLFRIRDPPAELATVDPM-GFTKESQIYFCAGLMYVTRALSAPTLDVYLSSVLLFTRVAIIVVLFFMSPALAAVFVILFTFVGLVFPQPRATTPAAVSVLNRVSFAERV-TRNKHKTITVVWL---HAPWSPRCTGLAPLLNRLVAAYDHPRLRWAKLDASVWTDVAADLDVSTAATSQQLPTVVVFSQGKELARLPTLGRDGGKLEGLKMTYASLVEGLGLDERLRVA 253          
BLAST of mRNA_L-elsbetiae_contig9304.18305.1 vs. uniprot
Match: A0A6Q2YXK4_ESOLU (Thioredoxin domain-containing protein n=3 Tax=Esox lucius TaxID=8010 RepID=A0A6Q2YXK4_ESOLU)

HSP 1 Score: 98.6 bits (244), Expect = 1.200e-20
Identity = 59/213 (27.70%), Postives = 104/213 (48.83%), Query Frame = 2
Query:  131 QETEVLGLAAATLLSKYRKMATFDELIDRLFFLGKAAVAVLLFFIGVPHMVSYLIIWTACSLVVPYPRFLFPPEVAFLSPGEFQSMVRSPSQAPGQRVAWLVMFYADWCSASHNLKPMFGALARRYADKNRRFAVVDVLAHPEIAEDLNISTAGTSKQIPTLALFASGREICRLPTFASDGRVVRARMDEGGVTKYFELDKEFRTASYSRRGR 769
            +E E+L   +A ++ K R+  T ++    LF   K A  +L F + +   + Y  + TA  +    P ++ P  + + S     + +   S     RV W+V FYA+W S   +   +F  L+ +Y     RF  +D   + E+A+   +ST+  ++Q+P+L LF SGRE+ R P   S  R V     E  V + F L++ ++ +   ++GR
Sbjct:   64 REVEILMFLSAIVMMKNRRAITLEQHAGNLFMFSKVANVILFFRLDIRLGILYFALITAFVMTCKQPLYMGPEYIKYFSDKTIDAELNQDS-----RVTWIVEFYANWSSECQSFASVFANLSLKYNCTGLRFGKIDAGRYDEVAKRYQVSTSPLARQLPSLVLFQSGREVMRRPMVDSKRRAVSWTFSEENVIREFNLNELYQASKQMKKGR 271          
BLAST of mRNA_L-elsbetiae_contig9304.18305.1 vs. uniprot
Match: UPI0015FAFC08 (thioredoxin-related transmembrane protein 2-like isoform X1 n=2 Tax=Oncorhynchus keta TaxID=8018 RepID=UPI0015FAFC08)

HSP 1 Score: 96.3 bits (238), Expect = 5.700e-20
Identity = 61/216 (28.24%), Postives = 104/216 (48.15%), Query Frame = 2
Query:  131 QETEVLGLAAATLLSKYRKMATFDELIDRLFFLGKAAVAVLLFFIGVPHMVSYLIIWTACSLVVPYPRFLFPPEVAFLSPGEFQSMVRSPSQAPGQRVAWLVMFYADWCSASHNLKPMFGALARRYADKNRRFAVVDVLAHPEIAEDLNISTAGTSKQIPTLALFASGREICRLPTFASDGRVVRARMDEGGVTKYFELDKEFRTASYSRRGRGKN 778
            ++ E+L   +A ++ K R+  T ++    LF   K A  +L F + +   + Y  +  A  +    P ++ P  + + S       +   +     RV W+V FYA+W     +  P+F  L+ +Y     RF  +D   + E+A+   +ST+  +KQ+PTL LF SGRE+ R P   +  R V     E  + + F L++ F  AS   +GRG+N
Sbjct:   45 RKVEILMFLSAIVMMKNRRAITLEQHAGNLFMFSKVANVILFFRLDIRLGIFYFALCIAFVMTCKPPLYMGPEYIKYFSEKTIDEELNHDT-----RVTWIVEFYANWSPQCQSFAPVFAXLSLKYNCAGLRFGKIDAGRYGEVAQRYKVSTSPLAKQLPTLVLFQSGREVMRRPMVDNKCRAVSWTFSEENIIREFNLNELFE-ASKKIKGRGEN 254          
BLAST of mRNA_L-elsbetiae_contig9304.18305.1 vs. uniprot
Match: A0A4W5L1F1_9TELE (Thioredoxin-related transmembrane protein 2a n=21 Tax=Salmonidae TaxID=8015 RepID=A0A4W5L1F1_9TELE)

HSP 1 Score: 97.1 bits (240), Expect = 8.150e-20
Identity = 58/214 (27.10%), Postives = 102/214 (47.66%), Query Frame = 2
Query:  131 QETEVLGLAAATLLSKYRKMATFDELIDRLFFLGKAAVAVLLFFIGVPHMVSYLIIWTACSLVVPYPRFLFPPEVAFLSPGEFQSMVRSPSQAPGQRVAWLVMFYADWCSASHNLKPMFGALARRYADKNRRFAVVDVLAHPEIAEDLNISTAGTSKQIPTLALFASGREICRLPTFASDGRVVRARMDEGGVTKYFELDKEFRTASYSRRGRG 772
            +E E+L   +A ++ K R+  T ++    LF   K A  +L F + +   + Y ++  A  +    P ++ P  + + S       +   +     RV W+V FYA+W     +  P+F  L+ +Y     RF  +D   + E+A+   +ST+  +KQ+P+L LF SGRE+ R P      R V     E  + + F L++ F  +   ++GRG
Sbjct:  107 REVEILMFLSAIVMMKNRRAITIEQHAGNLFMFSKVANVILFFRLDIRLGILYFLLCIAFVMTCKPPLYMGPEYIKYFSEKTIDEELNHDT-----RVTWIVEFYANWAPECQSFAPVFADLSLKYNCTGLRFGKIDAGRYGEVAQRYKVSTSPLAKQLPSLVLFQSGREVMRRPMVDIKFRAVSWTFSEENIIREFNLNELFEASKKIKKGRG 315          
BLAST of mRNA_L-elsbetiae_contig9304.18305.1 vs. uniprot
Match: UPI001AAD9EB8 (thioredoxin-related transmembrane protein 2 n=2 Tax=Ranoidea TaxID=30352 RepID=UPI001AAD9EB8)

HSP 1 Score: 95.5 bits (236), Expect = 1.410e-19
Identity = 54/206 (26.21%), Postives = 103/206 (50.00%), Query Frame = 2
Query:  131 QETEVLGLAAATLLSKYRKMATFDELIDRLFFLGKAAVAVLLFFIGVPHMVSYLIIWTACSLVVPYPRFLFPPEVAFLSPGEFQSMVRSPSQAPGQRVAWLVMFYADWCSASHNLKPMFGALARRYADKNRRFAVVDVLAHPEIAEDLNISTAGTSKQIPTLALFASGREICRLPTFASDGRVVRARMDEGGVTKYFELDKEFRTA 748
            +E E+L   +A ++ K R+  T ++ +  +F   K A  +L F + +   + Y+ +     +    P ++ P  + + +    +  ++S      +RV WLV F+A+W S   +  P++  L+ +Y     +F  VD+  +P+++    +ST+  SKQ+PTL LF SG+E+ R P     GR V        V + F L++ ++ A
Sbjct:   64 REVEILMFLSAIVMMKNRRSITIEQHVGNIFMFSKVANTILFFRLDLRMGLLYVTLCLVFLMTCKPPLYMGPEHIKYFNDKTMEEEMQSD-----RRVTWLVEFFANWSSECQSFAPIYAELSLKYNCAGLKFGKVDIGRYPDVSTKYGVSTSPLSKQLPTLILFQSGKEVLRRPQVDKKGRAVSWSFTPENVIREFNLNELYQKA 264          
BLAST of mRNA_L-elsbetiae_contig9304.18305.1 vs. uniprot
Match: A0A6I9XCY0_9HYME (thioredoxin-related transmembrane protein 2 homolog n=2 Tax=Formicidae TaxID=36668 RepID=A0A6I9XCY0_9HYME)

HSP 1 Score: 94.7 bits (234), Expect = 1.760e-19
Identity = 71/242 (29.34%), Postives = 115/242 (47.52%), Query Frame = 2
Query:   20 VHAHYVVNASMMLSYAVLRYF-MSSPHLTTKETWTGFSQETEVLGLAAATLLSKYRKMA--TFDELIDRLFFLGKAAVAVLLFFIGVPHMVSYLIIWTACSLVVPYPRFLFPPEVAFL--SPGEFQSMVRSPSQAPGQRVAWLVMFYADWCSASHNLKPMFGALARRYADKNRRFAVVDVLAHPEIAEDLNISTAGTSKQIPTLALFASGREICRLPTFASDGRVVRARMDEGGVTKYFELD 730
            V  +Y++N  + +SY + + F +   ++  ++      +ETE+L      ++ + RK    T    +   F   K A  +L F+  V   + +  I+  C+L++P P +  P  V +L  + G  + + R        RV WLV FY  W  A     P+F  L+  Y  +N +F  VD+  +P+ A+   IS A TSKQ+PTL LF SGREI R P     G+ V+       V    +L+
Sbjct:   11 VKPYYLINILLSISYILSKRFPVICNYIFVQDDCELDGRETEILFFLMIVIMMRTRKTGSVTMINYLTSSFVYTKVANLILWFYADVRMGILFAFIFILCALILPEPTYQGPENVIYLHGADGLQEELQRDT------RVVWLVAFYTAWNPACVTFAPIFSELSVEYTLENFKFGKVDIGRYPDAAKRHRISDASTSKQLPTLILFKSGREIERRPYMDHKGKFVKFLFSLDNVKAALDLN 246          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9304.18305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7FYM6_ECTSI2.840e-14678.85Thioredoxin-like protein n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JZG0_9PHAE2.400e-4665.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6V1S3B1_HETAK4.160e-4437.15Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6S8C4H8_9STRA8.520e-2931.60Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A1X6P1N4_PORUM1.980e-2127.64Thioredoxin domain-containing protein n=1 Tax=Porp... [more]
A0A6Q2YXK4_ESOLU1.200e-2027.70Thioredoxin domain-containing protein n=3 Tax=Esox... [more]
UPI0015FAFC085.700e-2028.24thioredoxin-related transmembrane protein 2-like i... [more]
A0A4W5L1F1_9TELE8.150e-2027.10Thioredoxin-related transmembrane protein 2a n=21 ... [more]
UPI001AAD9EB81.410e-1926.21thioredoxin-related transmembrane protein 2 n=2 Ta... [more]
A0A6I9XCY0_9HYME1.760e-1929.34thioredoxin-related transmembrane protein 2 homolo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9304contigL-elsbetiae_contig9304:1777..5832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score414.8
Seed ortholog evalue2.8e-113
Seed eggNOG ortholog2880.D7FYM6
Preferred nameTMX2
KEGG koko:K20030
Hectar predicted targeting categoryother localisation
EggNOG free text desc.thioredoxin-related transmembrane protein
EggNOG OGsKOG0914@1,KOG0914@2759
EC2.3.1.225
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04131
Ec32 ortholog descriptionThioredoxin-like protein
Ec32 orthologEc-26_002790.1
Exons7
Model size781
Cds size771
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9304.18305.1prot_L-elsbetiae_contig9304.18305.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9304 1787..5832 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817000.5639336-UTR-L-elsbetiae_contig9304:1776..17861622817000.5639336-UTR-L-elsbetiae_contig9304:1776..1786Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9304 1777..1786 +
1691683973.4126668-UTR-L-elsbetiae_contig9304:1776..17861691683973.4126668-UTR-L-elsbetiae_contig9304:1776..1786Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9304 1777..1786 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817000.5758634-CDS-L-elsbetiae_contig9304:1786..18251622817000.5758634-CDS-L-elsbetiae_contig9304:1786..1825Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9304 1787..1825 +
1691683973.4244854-CDS-L-elsbetiae_contig9304:1786..18251691683973.4244854-CDS-L-elsbetiae_contig9304:1786..1825Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9304 1787..1825 +
1622817000.588935-CDS-L-elsbetiae_contig9304:2229..23131622817000.588935-CDS-L-elsbetiae_contig9304:2229..2313Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9304 2230..2313 +
1691683973.4358346-CDS-L-elsbetiae_contig9304:2229..23131691683973.4358346-CDS-L-elsbetiae_contig9304:2229..2313Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9304 2230..2313 +
1622817000.6023962-CDS-L-elsbetiae_contig9304:2724..28961622817000.6023962-CDS-L-elsbetiae_contig9304:2724..2896Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9304 2725..2896 +
1691683973.4452493-CDS-L-elsbetiae_contig9304:2724..28961691683973.4452493-CDS-L-elsbetiae_contig9304:2724..2896Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9304 2725..2896 +
1622817000.6145678-CDS-L-elsbetiae_contig9304:3889..40881622817000.6145678-CDS-L-elsbetiae_contig9304:3889..4088Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9304 3890..4088 +
1691683973.4554367-CDS-L-elsbetiae_contig9304:3889..40881691683973.4554367-CDS-L-elsbetiae_contig9304:3889..4088Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9304 3890..4088 +
1622817000.625195-CDS-L-elsbetiae_contig9304:4340..44721622817000.625195-CDS-L-elsbetiae_contig9304:4340..4472Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9304 4341..4472 +
1691683973.4679482-CDS-L-elsbetiae_contig9304:4340..44721691683973.4679482-CDS-L-elsbetiae_contig9304:4340..4472Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9304 4341..4472 +
1622817000.6361518-CDS-L-elsbetiae_contig9304:4803..48671622817000.6361518-CDS-L-elsbetiae_contig9304:4803..4867Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9304 4804..4867 +
1691683973.479709-CDS-L-elsbetiae_contig9304:4803..48671691683973.479709-CDS-L-elsbetiae_contig9304:4803..4867Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9304 4804..4867 +
1622817000.6465433-CDS-L-elsbetiae_contig9304:5751..58321622817000.6465433-CDS-L-elsbetiae_contig9304:5751..5832Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9304 5752..5832 +
1691683973.4888806-CDS-L-elsbetiae_contig9304:5751..58321691683973.4888806-CDS-L-elsbetiae_contig9304:5751..5832Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9304 5752..5832 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9304.18305.1

>prot_L-elsbetiae_contig9304.18305.1 ID=prot_L-elsbetiae_contig9304.18305.1|Name=mRNA_L-elsbetiae_contig9304.18305.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=257bp
MRFVHAHYVVNASMMLSYAVLRYFMSSPHLTTKETWTGFSQETEVLGLAA
ATLLSKYRKMATFDELIDRLFFLGKAAVAVLLFFIGVPHMVSYLIIWTAC
SLVVPYPRFLFPPEVAFLSPGEFQSMVRSPSQAPGQRVAWLVMFYADWCS
ASHNLKPMFGALARRYADKNRRFAVVDVLAHPEIAEDLNISTAGTSKQIP
TLALFASGREICRLPTFASDGRVVRARMDEGGVTKYFELDKEFRTASYSR
RGRGKN*
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mRNA from alignment at L-elsbetiae_contig9304:1777..5832+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9304.18305.1 ID=mRNA_L-elsbetiae_contig9304.18305.1|Name=mRNA_L-elsbetiae_contig9304.18305.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4056bp|location=Sequence derived from alignment at L-elsbetiae_contig9304:1777..5832+ (Laminarionema elsbetiae ELsaHSoW15)
CAGACGGTGGATGCGCTTTGTGCACGCCCACTATGTCGTCAACGCTTCGG TGAGAGCCAAACGCCCCGAAAGTTATGATGTTCCTCTCTCCTCTCTGCAA CCCGGGTGGCGCTGATGGGTGTGGATTACGAGGAACTCTCTTATCAGTAG AATCGCTAGCCTACATAACCATGCTGTGTTCTCCCTTCGGTATTATCTGG GTGGTGGGCTACTGCTGTGCGTGCGTAAACCCATATCTTGCACGGAGCTC ATGATCACCGATCGATCACAATTCGAGGCCCCTTCGTCTAACTGCTGCCT CCTGCTGTAGCTCGGCTCTGCGGCTCTCTTTACCGTGTTGATTGTAGGCA ATGCAGAACTCAAAGTGGTGTACTACGAGTTCAAATGTTGACATGCCTAA TTGTATCGTGGTACGTAATGTAAATGGTTTTTATCTTTCTCTTCTTCCCG CAGATGATGCTCAGCTACGCCGTTTTGCGATATTTCATGTCTTCGCCTCA CCTGACGACTAAGGAAACCTGGACCGGTTTTTCCCAAGTGAGTGTTGTGC GGTAGACTAGTCCCTGGTCTCATCTACAAGGCACCATGCGCTGTGAATCC CCCCCTGTTGAAGGTTGCTGCTCGTGTGATTCAAAGAGGTGTCGAGACGT CGAGACACATACATAGACTATTTGTATTTACGTATTTATGTATGTATGGT ACATATATATGTACCATTAGACAGTACCTCGATCGAACACCTAAATACCG GTAGTCTGCTTACAGCAGTAGTGGTGAGAGCTAAAAGCCCGGAGTGTAGG AAGTTGTGACCATATTGTAGCAGCTAAGAGTGAAAGGCGGAATTGGGTGC CCTCTCTTGGCCCTTGCCCAGTACATTGCAATCGAGGAAGGAAACGCATA CGTGAGATGCGCTGATCTCTTTCGTAACATACATACGCGTCTGCCCAGGA AACTGAGGTCCTGGGTCTCGCGGCAGCTACGCTTCTTTCCAAGTACCGCA AGATGGCCACTTTCGATGAACTAATTGACAGACTTTTCTTCCTTGGGAAA GCTGCCGTGGCAGTCCTTCTGTTCTTCATCGGTGTCCCTCACATGGTGTC GTACCTCATCATTTGGACAGGTGTGTTTCCATTGTATTTGTCCATGCAGA TCGATCGTGACATATTTAGAAAAGGAGGTGAGATACCGTAAGAATCGGGG TGTTCGCACACTACTGCTGTGGAAGCCTTTTTTAATGCTTTCGTTTTTGG GCTTTTATGGCATAGGGTGCCAAAATGTCGACATGCAGAGACGCCGATGC CTGCGGCGAAACCGAATGAAATATTTTGGTTCTACATGAATACACAACAC CGATCCGTGCGATTCTGAGTTAAAACTAAATCGTCGTTATGGGGTATTTG GAACCTAAGCAACAAGAGTAAATTCAAGAATGAATGATGACGCGACGCTC ACTTGCACATGAGTACCGTCTCGATGCCAAAGCAAGGCGCGGTGGAGCCC ACGATATAAGCTCTCCCGCAGTACCGGACTTTCCAGTACAAAATTCTGGC ATGTCGCCCCTATCGTACATCACCGAAGGTATCGGAATCTCCGCACTGTG CGGAGACGCCGATCCCTGTACAATAACCGAATGAAATCAGTTGGAACCCG CTTTTTTTTTCCGCACCCCCATGCCAAGACACCGATTCTTACAGTAATTG TTTTTGGCATCGGTTGAAAGCACACAACGGAGTATTCTGTTGACTGCCGT GATCGCTGTGGACATCTTTTTTCTTTTTTTCCCTCCCATCATTGGCATAT TCGTCGTCTGCCCCAGTGGCCCCCTTCCCCCACTACGACTAGCTCGACGA ACCAACCGGGGTCACACAGGAGGGGGGGGTGGACCCCCTCCTGCGGTGCC TGCCTTGAATGTTTTTATGGCGAGCAGGGTTCAGCACCCCCACCCTCGTC AACAATGAAATCGAAGTAATGCGCATGTGTGTGTGTTTGAGTGAAACACA CGCTGTCGACACATGTACTTCGATATCGATCGTGCTTCTGCTGCAGCTTT TTTTTAGTGTGAATAGGTTTTGTAAGAACCTAGTTCACAACGCTGTGATC CACGCGCCGCCAGCTTGCTCGCTGGTGGTACCGTACCCACGTTTTTTGTT TCCGCCAGAGGTGGCTTTTCTCTCTCCTGGAGAATTCCAGTCCATGGTGA GATCGCCGTCACAAGCACCCGGACAGCGAGTTGCTTGGCTGGTTATGTTC TATGCGGACTGGTGCAGCGCGAGCCACAACCTTAAGCCTATGTTCGGCGC ACTAGCAAGGAGGTACGTGATGGTGTGGAATGCAGAAACCAGCTATTGTA GAAGTATGACTTGTGTTAGGCAAGTTATATTCTGCCATCTCGTTGTGCTG CCGAAACGGACGGCAAACATTTCACACGCACCTGGCACGATTCTTTGTCT CTGTTCTGCGAAATGTAGTTGGAGAGAAGAGCATATCATTGCTGTAGGCA CGACCGTAACATGCTGTAAGCCCCCAGGCTCCACCGACTAGTGCTTACAT GTTTGAATTACCAGATACGCGGACAAGAACAGGCGGTTTGCCGTCGTGGA TGTGTTGGCTCATCCAGAGATTGCTGAAGACCTAAATATCAGCACGGCTG GCACGAGCAAGCAAATACCAACTTTGGCACTTTTTGCCTCTGGGAGGTGA GGGTGTAGTCCTCTGTAAGAGTGTACTTGTAAATGCGCGAGAGCCCGGAA GCCCCCTAGAATGTACCCAAATCACATGAGAGATATCTCCCGCGCGTAGT TCTCAACTGGACGCCTCACAAGGACCAACTCCCATGCTTCTGGGACGCCC GGCCTTCATGATGAGAGCTCGAAAAGTACGAAACCTTTGATACGGGACCC GAATGTCTGTTCGTTGTATTGGCGGTGGTGAACGCTGCGCACGCTCCTCG GGACTGACTTTTACTGTACGTGCTTGTTGCGATTGATGTCTTGTGTTGTG TACTCCTGTCTCACTCATCGCCACCAGGGAAATCTGCAGGCTACCGACGT TTGCATCAGATGGCCGCGTCGTTCGAGCTCGAATGGATGAGGTGAGAGGC AGGAGTGCCATATGAGTTCATTTAAAAGCTTGGGTGCGCATTGTACGATG GCGCGCCCACCTTGGTTGTGATAGTGCGGGCTACAATCGCACAACAGGAG TTTGCGATCAATTTTTGAAATAATTTTATTAAACTGCCTTTTTTTTCGCA CAGGTGCGCGGTAGCCCCGACATGAGCGATCGACCCGACCCCTGTGCGGA AGTCGAATTAATCGTTGGTACTGATGTTGCAGCGCACACCCACCCCTGTG CGATAACTCCGATATAGGCGTGTCTGAATAAATCATAGCGTCTTTTAGTT TTTCTTGTACATACTGCTGCAAAAGGAGCTGCGAAAGTTTTTACACATAG CCTAGCATTCAAGCAACCCCGTACTTAAGAACCACCTATTTTGGGCGAGG CTCGTTGCTTATAAGCTGCCCCAAAAACCGAGCACCTGGCCAAGTGTGTC TATACAAGCGCGCCATCCGGCCGAAAAATACATTATTGGGAGCTTTTCTC CAGTTGCCAGACATCTCGTACTACCGTACGTGGTCATTAATTTCGTTTTA TCTCGAGTCAAAATCTATCCCTTCGTGCGCGGCCTTTTTCTGGAAAAAAT GGCCGGTCTTGGGCCACCTCGCGCCCAAAAGTGGGTTTAAGTGGGGGCTA TTTATCGCACCCCTTTACGATAGCCCCGTGCTTTCGCACAGGGATACGAT TGCCCTGCCCTAATCGTGCGATCGCCCGCATTAGTGCGGTATTGCGCTCG AGTTGAATCGGTGGAACACGTAGTAGTTCGACCTTGATGTGTTACACACC TGGTTGCTGCAACTCCTGTCGTCGTGCATACGTGTCAACTAACGTGCGAC GTTTTACGCCACCTCTTTGCCGCAGGGTGGGGTAACAAAGTACTTTGAAC TCGACAAAGAGTTTAGGACGGCGAGTTACTCGCGCAGGGGAAGAGGCAAA AATTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9304:1777..5832+

>mRNA_L-elsbetiae_contig9304.18305.1 ID=mRNA_L-elsbetiae_contig9304.18305.1|Name=mRNA_L-elsbetiae_contig9304.18305.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1542bp|location=Sequence derived from alignment at L-elsbetiae_contig9304:1777..5832+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGCTTTGTGCACGCCCACTATGTCGTCAACGCTTCGATGCGCTTTGT
GCACGCCCACTATGTCGTCAACGCTTCGATGATGCTCAGCTACGCCGTTT
TGCGATATTTCATGTCTTCGCCTCACCTGACGACTAAGGAAACCTGGACC
GGTTTTTCCCAAATGATGCTCAGCTACGCCGTTTTGCGATATTTCATGTC
TTCGCCTCACCTGACGACTAAGGAAACCTGGACCGGTTTTTCCCAAGAAA
CTGAGGTCCTGGGTCTCGCGGCAGCTACGCTTCTTTCCAAGTACCGCAAG
ATGGCCACTTTCGATGAACTAATTGACAGACTTTTCTTCCTTGGGAAAGC
TGCCGTGGCAGTCCTTCTGTTCTTCATCGGTGTCCCTCACATGGTGTCGT
ACCTCATCATTTGGACAGGAAACTGAGGTCCTGGGTCTCGCGGCAGCTAC
GCTTCTTTCCAAGTACCGCAAGATGGCCACTTTCGATGAACTAATTGACA
GACTTTTCTTCCTTGGGAAAGCTGCCGTGGCAGTCCTTCTGTTCTTCATC
GGTGTCCCTCACATGGTGTCGTACCTCATCATTTGGACAGCTTGCTCGCT
GGTGGTACCGTACCCACGTTTTTTGTTTCCGCCAGAGGTGGCTTTTCTCT
CTCCTGGAGAATTCCAGTCCATGGTGAGATCGCCGTCACAAGCACCCGGA
CAGCGAGTTGCTTGGCTGGTTATGTTCTATGCGGACTGGTGCAGCGCGAG
CCACAACCTTAAGCCTATGTTCGGCGCACTAGCAAGGAGCTTGCTCGCTG
GTGGTACCGTACCCACGTTTTTTGTTTCCGCCAGAGGTGGCTTTTCTCTC
TCCTGGAGAATTCCAGTCCATGGTGAGATCGCCGTCACAAGCACCCGGAC
AGCGAGTTGCTTGGCTGGTTATGTTCTATGCGGACTGGTGCAGCGCGAGC
CACAACCTTAAGCCTATGTTCGGCGCACTAGCAAGGAGATACGCGGACAA
GAACAGGCGGTTTGCCGTCGTGGATGTGTTGGCTCATCCAGAGATTGCTG
AAGACCTAAATATCAGCACGGCTGGCACGAGCAAGCAAATACCAACTTTG
GCACTTTTTGCCTCTGGGAGATACGCGGACAAGAACAGGCGGTTTGCCGT
CGTGGATGTGTTGGCTCATCCAGAGATTGCTGAAGACCTAAATATCAGCA
CGGCTGGCACGAGCAAGCAAATACCAACTTTGGCACTTTTTGCCTCTGGG
AGGGAAATCTGCAGGCTACCGACGTTTGCATCAGATGGCCGCGTCGTTCG
AGCTCGAATGGATGAGGGAAATCTGCAGGCTACCGACGTTTGCATCAGAT
GGCCGCGTCGTTCGAGCTCGAATGGATGAGGGTGGGGTAACAAAGTACTT
TGAACTCGACAAAGAGTTTAGGACGGCGAGTTACTCGCGCAGGGGAAGAG
GCAAAAATTGAGGTGGGGTAACAAAGTACTTTGAACTCGACAAAGAGTTT
AGGACGGCGAGTTACTCGCGCAGGGGAAGAGGCAAAAATTGA
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