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Homology
BLAST of mRNA_L-elsbetiae_contig8743.17774.1 vs. uniprot
Match: D7G0C5_ECTSI (Fanconi-associated nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0C5_ECTSI) HSP 1 Score: 173 bits (438), Expect = 1.820e-45 Identity = 155/285 (54.39%), Postives = 178/285 (62.46%), Query Frame = 1
Query: 1 VSLPWTDKRGVQRAALLTRTKAKPVVSNPLLMLATLLAWMGELPSDSLPEKRRFLLPECLLSPQSPP--------TLGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPGSVP------------LSLGAAWLLAHLLFGRNAGGKVLRSFTARTRPDGKVCVYVGLSGGEVAALAMVSCPLIGWSPRPEEVMQARALSEGGGSLCGYSVSPSEFVTDTAAGGAAAAAELIRVGLAKAVE--GRLALALQMEAACELVLGVFVTKSWSPDREVMARVALGLRK 789
V + WTD G R A+LTRTKAKP NPL MLA LLAWM ELP +LPE R + E LL+ QSP T+G+ XXXXXXXXXXXXXXXXXXXXXXXXXXXX LSLGAAWLLAHL+FG + GGK F R +GKV LSG E A+ ++ CPLIGWSPRP EV+QA +SEG G LC YSV + F T T G AA EL+ G A+ VE LAL +ME ACELVL +F+ +W DREV A+VALGL K
Sbjct: 160 VPVTWTDSTGQSRTAILTRTKAKPKPCNPLPMLANLLAWMRELPPGALPENRLRIRLETLLALQSPSKSVSRQSSTIGKNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSLGAAWLLAHLMFGMDGGGKATGPFE-REILNGKV----SLSGAEANAMPLLLCPLIGWSPRPREVIQA--MSEGAGILCAYSVELAAFETQTGICGKAAD-ELVHAGFARKVEFGEMLALDQKMEDACELVLKIFLC-NWDVDREVRAQVALGLTK 435
BLAST of mRNA_L-elsbetiae_contig8743.17774.1 vs. uniprot
Match: A0A6H5KLH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLH2_9PHAE) HSP 1 Score: 141 bits (356), Expect = 3.390e-35 Identity = 120/226 (53.10%), Postives = 141/226 (62.39%), Query Frame = 1
Query: 1 VSLPWTDKRGVQRAALLTRTKAKPVVSNPLLMLATLLAWMGELPSDSLPEKRRFLLPECLLSPQSPPTL----------------------GRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPG------SVPLSLGAAWLLAHLLFGRNAGGKVLR-SFTARTRPDGKVCVYVGLSGGEVAALAMVSCPLIGWSPRPEEVMQARALSEGGGSLCGYSVSPSEF 591
V L WTD +G +R L +TKAKP V NPLLMLATLLAWM E LPE R +LP+ LL+P + G XXXXXXXXXXXXXXXXXXXXXXXXX G LS GAAWLLAH++FGR +GG+ R S A+ G++ GL+GGE AAL+++SCPLIGW PRPE+VM+A LSEGGGSL YS+SPSEF
Sbjct: 180 VPLTWTDSKGFKRTTSLIQTKAKPKVCNPLLMLATLLAWMREFSPGVLPESNRPVLPKALLAPDQASSSAATSALQSNNNGSKSNIRSNSSGNNSGVSXXXXXXXXXXXXXXXXXXXXXXXXXXXGRTKEKFETELSPGAAWLLAHMMFGRGSGGQQQRVSSYAQVPHKGEI----GLNGGEAAALSLLSCPLIGWCPRPEDVMEA--LSEGGGSLRAYSISPSEF 399
BLAST of mRNA_L-elsbetiae_contig8743.17774.1 vs. uniprot
Match: D7G0C7_ECTSI (Fanconi-associated nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0C7_ECTSI) HSP 1 Score: 110 bits (276), Expect = 7.220e-24 Identity = 71/149 (47.65%), Postives = 88/149 (59.06%), Query Frame = 1
Query: 439 VGLSGGEVAALAMVSCPLIGWSPRPEEVMQARALSEGGGSLCGYSVSPSEFVTDTA----------------------------AGGAAAAA--ELIRVGLAK--AVEGRLALALQMEAACELVLGVFVTKSWSPDREVMARVALGLRK 789
+GL GGE AAL+++ CPLIGWSPRPE+VM+A LSEGGGSL YS+SPSEF T A GG A AA EL+RVG A+ A+ G L L +ME C+ VL +F+ + W P R+VMAR+ LGL K
Sbjct: 185 IGLYGGEAAALSLLPCPLIGWSPRPEDVMEA--LSEGGGSLRAYSISPSEFDTGVADNVRGQEVTPDIPKVKDLGVEQKREAAGGGGRAQAAVDELVRVGYARKRAILGLLTLTPKMEDTCKAVLKIFLGQDWDPQRDVMARITLGLIK 331
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 173.3 |
Seed ortholog evalue | 1.5e-40 |
Seed eggNOG ortholog | 2880.D7G0C5 |
Hectar predicted targeting category | other localisation |
EggNOG free text desc. | phosphodiesterase I activity |
EggNOG OGs | KOG2143@1,KOG2143@2759 |
COG Functional cat. | S |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
Ec32 ortholog description | VRR-NUC domain |
Ec32 ortholog | Ec-02_000950.1 |
Exons | 5 |
Model size | 789 |
Cds size | 789 |
Stop | 0 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816954.4482653-CDS-L-elsbetiae_contig8743:66..504 | 1622816954.4482653-CDS-L-elsbetiae_contig8743:66..504 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8743 67..504 + |
1691683938.5713778-CDS-L-elsbetiae_contig8743:66..504 | 1691683938.5713778-CDS-L-elsbetiae_contig8743:66..504 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8743 67..504 + |
1622816954.4613051-CDS-L-elsbetiae_contig8743:1731..1827 | 1622816954.4613051-CDS-L-elsbetiae_contig8743:1731..1827 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8743 1732..1827 + |
1691683938.5838861-CDS-L-elsbetiae_contig8743:1731..1827 | 1691683938.5838861-CDS-L-elsbetiae_contig8743:1731..1827 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8743 1732..1827 + |
1622816954.4721165-CDS-L-elsbetiae_contig8743:2361..2439 | 1622816954.4721165-CDS-L-elsbetiae_contig8743:2361..2439 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8743 2362..2439 + |
1691683938.5948095-CDS-L-elsbetiae_contig8743:2361..2439 | 1691683938.5948095-CDS-L-elsbetiae_contig8743:2361..2439 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8743 2362..2439 + |
1622816954.4825058-CDS-L-elsbetiae_contig8743:2496..2574 | 1622816954.4825058-CDS-L-elsbetiae_contig8743:2496..2574 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8743 2497..2574 + |
1691683938.6064446-CDS-L-elsbetiae_contig8743:2496..2574 | 1691683938.6064446-CDS-L-elsbetiae_contig8743:2496..2574 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8743 2497..2574 + |
1622816954.4924293-CDS-L-elsbetiae_contig8743:3659..3758 | 1622816954.4924293-CDS-L-elsbetiae_contig8743:3659..3758 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8743 3660..3758 + |
1691683938.6178603-CDS-L-elsbetiae_contig8743:3659..3758 | 1691683938.6178603-CDS-L-elsbetiae_contig8743:3659..3758 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8743 3660..3758 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8743.17774.1 >prot_L-elsbetiae_contig8743.17774.1 ID=prot_L-elsbetiae_contig8743.17774.1|Name=mRNA_L-elsbetiae_contig8743.17774.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=263bp
VSLPWTDKRGVQRAALLTRTKAKPVVSNPLLMLATLLAWMGELPSDSLPE KRRFLLPECLLSPQSPPTLGRRRRSSSSSSYNSNNNAAHDGGRSGGGGGG GNPGSVPLSLGAAWLLAHLLFGRNAGGKVLRSFTARTRPDGKVCVYVGLS GGEVAALAMVSCPLIGWSPRPEEVMQARALSEGGGSLCGYSVSPSEFVTD TAAGGAAAAAELIRVGLAKAVEGRLALALQMEAACELVLGVFVTKSWSPD REVMARVALGLRK back to topmRNA from alignment at L-elsbetiae_contig8743:67..3758+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig8743.17774.1 ID=mRNA_L-elsbetiae_contig8743.17774.1|Name=mRNA_L-elsbetiae_contig8743.17774.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3692bp|location=Sequence derived from alignment at L-elsbetiae_contig8743:67..3758+ (Laminarionema elsbetiae ELsaHSoW15) GTGTCTCTTCCCTGGACCGACAAGCGAGGGGTCCAGCGCGCCGCGCTCCT
GACGCGGACGAAGGCGAAGCCGGTGGTGAGTAACCCGCTCCTCATGCTGG
CCACCCTGCTGGCGTGGATGGGGGAGCTCCCCTCGGACTCCCTGCCGGAG
AAGAGGCGCTTCCTTCTCCCGGAGTGCCTGCTATCGCCGCAGTCGCCACC
GACCCTTGGCCGCCGCCGCCGCAGCAGCAGCAGCAGCAGCTACAACAGCA
ACAACAACGCAGCCCACGACGGCGGTAGGAGCGGCGGCGGCGGCGGCGGC
GGCAACCCGGGAAGCGTGCCGCTATCTCTGGGGGCGGCGTGGTTGCTGGC
GCACCTCCTGTTCGGGCGTAACGCCGGCGGCAAGGTGCTGCGGAGCTTCA
CCGCAAGAACGCGCCCCGACGGCAAGGTGTGTGTTTATGTGATTCACGGT
ACCCCTCCCGCGAGTGCTTGTGTGTGTGTGTGTGTGCACGTACGTGCGCA
CGCGGTTTATCGGTCTATCATACCGCGCGACCGGCTGAGCTTGTCACGTC
CTCGCCTCCGAATGGAAAGGAGTGCGCTTTGTGTTTTCAAACCTATCATG
CTGTGCGACCGGCTAGATGTATCACGCTCTCGTCAATTGGGGAACTTCCA
GAAAATGGGGAATGCCCAATTAGAGTGTGTTCTCTCACAAGAACCCCCCC
CCCCCATGTGTTACCATCGACTGGGCTCCCTCCGAAGAGTAGTGTGCGCA
TCCGCCGGCTGCGGTTGTCCGATGTTGGTAGCTTTGCTTTCTCCCTGGTG
GGAAAGCAGCACCGTGGACACAATAATCGATTCGTCAGGCACCTGGCCCA
CGCGCTCAATCAGCTGTGGTCCTCCTCCCCCCCCCCTCCGGCTTTGGAGA
GAGCTTGAGAGGAGCCTTGTGCATCTGCAAACGCTGCTTCGCGTTCTGCG
TGCTTATGCTCCCAAGACGTCTCCCTGCGCGAATGCATGCAGGCATCGAG
TTATCGATATTTATGTATTTATAGAGTACCTCCATCGACGCCCGTCCTTC
CGAGCGATAGCGATAAATGCAGCAGTCCTACTACGTGCTCCGGATTGCCA
GCTCTCACACCCATGTTTATAGGGAAAAAATCTTGAAAATAAAAATCTTG
GTGTATTTTGACCTTTGTGGCCACGTTTCTTCGCCACGAGCTCGGAATCA
GATTTTCGCTTCTCAGGGACTTTCAAAGCTCTCCTCCTGAGGTTTACGGA
TCAGCTGTCCAATCTGGCACACTCCGGGTTGGGTTGTTGACCTCGGAGCA
AGATTTTGCTAGATTTGGCCAAGATTTACAAATTTTGCACATTTTGGCTG
AATATTTGCGCTAACACGACTTTTTGGCCAGATCTTGCCCAGATCCAGCA
AAATCTTGCTCCGAGAAAAACAACCAAACCCGGAGTGTGCCAGATTGGAC
AGCTGATCCGTAAACCTCTGGAGGAGAGTTTTTGAAAGTCCCTGAGAAGC
GAAAATCTGATTCCGAGCTCTTGGCGAGGAAAAGTGGCCACAAAGGTCAA
AATACACCAAGATTTTTATTTTCAAGATTTTTTTTCCTATAAACATCGGC
CTCAGCAGCACAGCCCTGTATCATTGGCGATTTGTTCCGCGCCCGACCAC
GCCGTGCGTGTTTAGGTGGGACTCTCTGGAGGGGAGGTGGCAGCGCTGGC
GATGGTGTCGTGTCCACTTATTGGCTGGAGCCCGAGGCCCGAAGAAGTGA
TGCAGGCGAGGGTTTGCCGAGTTCCCCCAAGAAGGGTAACGGGATGGTTC
TTGAGGTGCTGTGCTGTTTTCTTGTGGCCACGTTTCTTGTTGTGGCCATC
TTGTTGCGACCATGTCGTTGCTGCTGCTGCTGCTGCTGCTGTTAGCGTTA
GTGTGGTTGTTGCTGTTGTTGTTATGACCATGCTGTGGCCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTTTGGTGT
TGTTGCTGTGGTGGTGGTCGATGTCATCGTCGTCGTTCTCCTTATTCTTG
CCGGTGCCAGTGGTTAATGTCCGTGTTTGGTGAGGCTGTTGTGTCTTGTT
GTTGATAACGAACCCGCCGGTAGTTACCCCGCATTACCCCGCATTGTCCC
GCAAAGCGAAACCGTCACGTCCGGCTTCCATGCCCCACCACCACATCGAG
GCGACAAGCCCCGCTCTAAAATACATACCAGCCACCTCTCGCACACCAAA
ACCCGTAAGCGTTCCTTGCGCCGCACGCCACCAACTGCTTCCCAGGCGCT
GTCCGAAGGGGGGGGAAGCCTTTGCGGGTACTCGGTCTCGCCGTCGGAGT
TCGTCACCGACACCGCGGCCGGGGTCGGCGGGGATGGAGCGGCGGCGGCG
GGGGCGGCGGAGGGGGGGGGGGGGGCAGAGGGAGCGGCGGCCGCCGCCGA
GCTCATTCGGGTTGGCTTGGCAAAGGCCGTCGAAGGGCGGCTGGCCCTGG
CACTGCAGGTGTGGGAACAGTAGTGGGTATTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGCTGTTGCTATTGTTGCTGCTGTTGCTGTTGCTGTTGCTATT
GTTGTTGTTGCTGCTGCTGCTGCTGTTGTTGCTGCTGCTGCTGTTGCTGC
TGCTGTTGTTGTTGTTGTTGTCGTTGTGTTTGAGAACAGAACAGTGGCAG
ATTTTCGGTTATCGATAATGATGATGTTGTTGCTGCTGCTGCTGTTGCTG
TTGTTGTTTTGTTGGTGGCGGCGTTGGTTGGGGGGTGTTATTGCTGATTT
GCTGCTGTTGGTGGTGTTTGCGCCATTCCTTGCTCGCCTACTTGCGCTTG
CAGCTGGGGGGCTCGTACTACTGGTGCTGCTGTTGTACCCCGCCGTTCGT
CCTTAGAAAGCGTATCGGCAACTACAAATATCTTCGCATTTGAGAACCAA
TTTTATCAAGTACTGCTGGACCACCATAGATATATAATCCATGTATGCAT
CCTCCAACACAGCAGTAACGTCGGTTGCGTTGACACGGGTCCTAAAGTAT
GCCCGGTGCAGAAGGTGATGCTATTTGTATCTTTTCAACGAACCTAGCTG
TAAGCATCGTACGCCTTTTCCGTGCTTTTTTTGTTTTTTCTTCTTCACAT
TTATTTTTCCAGTGCTTGATGGGTTGATCTGCATGCCATGATGGACGGAT
GTTACTTCATAGTAGTATGCGTTGGAGGGAAAATTCATGCGTTTCGTTGT
CTTTCAACGAGTCGGCTATTGCCTGTGCGCCATCCCTTCGTGCCGGTGGC
GTCATGAAGCTGGTGACTGGTGTGCTGACGCTGCTGCTGCTGCTGCTGCT
GTTGTTCCTGGCCGTTCTGGGCTTCGAACGCATATTGACACATGTACATC
ATACCCACGTATTTCAAAGAAAACCAATTGTTCGCATCTGAGAACCAATC
TTTTCAGGTAAATACATACCTGCCATGGGTGTCTTCTCAACGAGCTCGCT
CGCCTGTTTTGTAGTAGAGATACATACATAGGATCAGGGTTCATCTCCAT
CCTCCGCCCTCTCCTATACCCTCCCTCCCCCCGCCACAAACAGATGGAAG
CGGCCTGCGAGCTAGTCCTGGGCGTCTTTGTCACCAAGAGCTGGAGCCCG
GACAGAGAAGTCATGGCCAGGGTTGCCCTGGGGCTACGGAAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig8743:67..3758+ >mRNA_L-elsbetiae_contig8743.17774.1 ID=mRNA_L-elsbetiae_contig8743.17774.1|Name=mRNA_L-elsbetiae_contig8743.17774.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1578bp|location=Sequence derived from alignment at L-elsbetiae_contig8743:67..3758+ (Laminarionema elsbetiae ELsaHSoW15) GTGTCTCTTCCCTGGACCGACAAGCGAGGGGTCCAGCGCGCCGCGCTCCT GACGCGGACGAAGGCGAAGCCGGTGGTGAGTAACCCGCTCCTCATGCTGG CCACCCTGCTGGCGTGGATGGGGGAGCTCCCCTCGGACTCCCTGCCGGAG AAGAGGCGCTTCCTTCTCCCGGAGTGCCTGCTATCGCCGCAGTCGCCACC GACCCTTGGCCGCCGCCGCCGCAGCAGCAGCAGCAGCAGCTACAACAGCA ACAACAACGCAGCCCACGACGGCGGTAGGAGCGGCGGCGGCGGCGGCGGC GGCAACCCGGGAAGCGTGCCGCTATCTCTGGGGGCGGCGTGGTTGCTGGC GCACCTCCTGTTCGGGCGTAACGCCGGCGGCAAGGTGCTGCGGAGCTTCA CCGCAAGAACGCGCCCCGACGGCAAGGTGTGTGTTTATGTGTCTCTTCCC TGGACCGACAAGCGAGGGGTCCAGCGCGCCGCGCTCCTGACGCGGACGAA GGCGAAGCCGGTGGTGAGTAACCCGCTCCTCATGCTGGCCACCCTGCTGG CGTGGATGGGGGAGCTCCCCTCGGACTCCCTGCCGGAGAAGAGGCGCTTC CTTCTCCCGGAGTGCCTGCTATCGCCGCAGTCGCCACCGACCCTTGGCCG CCGCCGCCGCAGCAGCAGCAGCAGCAGCTACAACAGCAACAACAACGCAG CCCACGACGGCGGTAGGAGCGGCGGCGGCGGCGGCGGCGGCAACCCGGGA AGCGTGCCGCTATCTCTGGGGGCGGCGTGGTTGCTGGCGCACCTCCTGTT CGGGCGTAACGCCGGCGGCAAGGTGCTGCGGAGCTTCACCGCAAGAACGC GCCCCGACGGCAAGGTGTGTGTTTATGTGGGACTCTCTGGAGGGGAGGTG GCAGCGCTGGCGATGGTGTCGTGTCCACTTATTGGCTGGAGCCCGAGGCC CGAAGAAGTGATGCAGGCGAGGGTGGGACTCTCTGGAGGGGAGGTGGCAG CGCTGGCGATGGTGTCGTGTCCACTTATTGGCTGGAGCCCGAGGCCCGAA GAAGTGATGCAGGCGAGGGCGCTGTCCGAAGGGGGGGGAAGCCTTTGCGG GTACTCGGTCTCGCCGTCGGAGTTCGTCACCGACACCGCGGCCGGGGCGC TGTCCGAAGGGGGGGGAAGCCTTTGCGGGTACTCGGTCTCGCCGTCGGAG TTCGTCACCGACACCGCGGCCGGGGGAGCGGCGGCCGCCGCCGAGCTCAT TCGGGTTGGCTTGGCAAAGGCCGTCGAAGGGCGGCTGGCCCTGGCACTGC AGGGAGCGGCGGCCGCCGCCGAGCTCATTCGGGTTGGCTTGGCAAAGGCC GTCGAAGGGCGGCTGGCCCTGGCACTGCAGATGGAAGCGGCCTGCGAGCT AGTCCTGGGCGTCTTTGTCACCAAGAGCTGGAGCCCGGACAGAGAAGTCA TGGCCAGGGTTGCCCTGGGGCTACGGAAGATGGAAGCGGCCTGCGAGCTA GTCCTGGGCGTCTTTGTCACCAAGAGCTGGAGCCCGGACAGAGAAGTCAT GGCCAGGGTTGCCCTGGGGCTACGGAAG back to top
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