mRNA_L-elsbetiae_contig8743.17774.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8743.17774.1
Unique NamemRNA_L-elsbetiae_contig8743.17774.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig8743.17774.1 vs. uniprot
Match: D7G0C5_ECTSI (Fanconi-associated nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0C5_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 1.820e-45
Identity = 155/285 (54.39%), Postives = 178/285 (62.46%), Query Frame = 1
Query:    1 VSLPWTDKRGVQRAALLTRTKAKPVVSNPLLMLATLLAWMGELPSDSLPEKRRFLLPECLLSPQSPP--------TLGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPGSVP------------LSLGAAWLLAHLLFGRNAGGKVLRSFTARTRPDGKVCVYVGLSGGEVAALAMVSCPLIGWSPRPEEVMQARALSEGGGSLCGYSVSPSEFVTDTAAGGAAAAAELIRVGLAKAVE--GRLALALQMEAACELVLGVFVTKSWSPDREVMARVALGLRK 789
            V + WTD  G  R A+LTRTKAKP   NPL MLA LLAWM ELP  +LPE R  +  E LL+ QSP         T+G+  XXXXXXXXXXXXXXXXXXXXXXXXXXXX                  LSLGAAWLLAHL+FG + GGK    F  R   +GKV     LSG E  A+ ++ CPLIGWSPRP EV+QA  +SEG G LC YSV  + F T T   G AA  EL+  G A+ VE    LAL  +ME ACELVL +F+  +W  DREV A+VALGL K
Sbjct:  160 VPVTWTDSTGQSRTAILTRTKAKPKPCNPLPMLANLLAWMRELPPGALPENRLRIRLETLLALQSPSKSVSRQSSTIGKNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSLGAAWLLAHLMFGMDGGGKATGPFE-REILNGKV----SLSGAEANAMPLLLCPLIGWSPRPREVIQA--MSEGAGILCAYSVELAAFETQTGICGKAAD-ELVHAGFARKVEFGEMLALDQKMEDACELVLKIFLC-NWDVDREVRAQVALGLTK 435          
BLAST of mRNA_L-elsbetiae_contig8743.17774.1 vs. uniprot
Match: A0A6H5KLH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLH2_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 3.390e-35
Identity = 120/226 (53.10%), Postives = 141/226 (62.39%), Query Frame = 1
Query:    1 VSLPWTDKRGVQRAALLTRTKAKPVVSNPLLMLATLLAWMGELPSDSLPEKRRFLLPECLLSPQSPPTL----------------------GRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPG------SVPLSLGAAWLLAHLLFGRNAGGKVLR-SFTARTRPDGKVCVYVGLSGGEVAALAMVSCPLIGWSPRPEEVMQARALSEGGGSLCGYSVSPSEF 591
            V L WTD +G +R   L +TKAKP V NPLLMLATLLAWM E     LPE  R +LP+ LL+P    +                       G      XXXXXXXXXXXXXXXXXXXXXXXXX  G         LS GAAWLLAH++FGR +GG+  R S  A+    G++    GL+GGE AAL+++SCPLIGW PRPE+VM+A  LSEGGGSL  YS+SPSEF
Sbjct:  180 VPLTWTDSKGFKRTTSLIQTKAKPKVCNPLLMLATLLAWMREFSPGVLPESNRPVLPKALLAPDQASSSAATSALQSNNNGSKSNIRSNSSGNNSGVSXXXXXXXXXXXXXXXXXXXXXXXXXXXGRTKEKFETELSPGAAWLLAHMMFGRGSGGQQQRVSSYAQVPHKGEI----GLNGGEAAALSLLSCPLIGWCPRPEDVMEA--LSEGGGSLRAYSISPSEF 399          
BLAST of mRNA_L-elsbetiae_contig8743.17774.1 vs. uniprot
Match: D7G0C7_ECTSI (Fanconi-associated nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0C7_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 7.220e-24
Identity = 71/149 (47.65%), Postives = 88/149 (59.06%), Query Frame = 1
Query:  439 VGLSGGEVAALAMVSCPLIGWSPRPEEVMQARALSEGGGSLCGYSVSPSEFVTDTA----------------------------AGGAAAAA--ELIRVGLAK--AVEGRLALALQMEAACELVLGVFVTKSWSPDREVMARVALGLRK 789
            +GL GGE AAL+++ CPLIGWSPRPE+VM+A  LSEGGGSL  YS+SPSEF T  A                             GG A AA  EL+RVG A+  A+ G L L  +ME  C+ VL +F+ + W P R+VMAR+ LGL K
Sbjct:  185 IGLYGGEAAALSLLPCPLIGWSPRPEDVMEA--LSEGGGSLRAYSISPSEFDTGVADNVRGQEVTPDIPKVKDLGVEQKREAAGGGGRAQAAVDELVRVGYARKRAILGLLTLTPKMEDTCKAVLKIFLGQDWDPQRDVMARITLGLIK 331          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8743.17774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0C5_ECTSI1.820e-4554.39Fanconi-associated nuclease n=1 Tax=Ectocarpus sil... [more]
A0A6H5KLH2_9PHAE3.390e-3553.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0C7_ECTSI7.220e-2447.65Fanconi-associated nuclease n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8743contigL-elsbetiae_contig8743:67..3758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score173.3
Seed ortholog evalue1.5e-40
Seed eggNOG ortholog2880.D7G0C5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphodiesterase I activity
EggNOG OGsKOG2143@1,KOG2143@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionVRR-NUC domain
Ec32 orthologEc-02_000950.1
Exons5
Model size789
Cds size789
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8743.17774.1prot_L-elsbetiae_contig8743.17774.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8743 67..3758 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816954.4482653-CDS-L-elsbetiae_contig8743:66..5041622816954.4482653-CDS-L-elsbetiae_contig8743:66..504Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8743 67..504 +
1691683938.5713778-CDS-L-elsbetiae_contig8743:66..5041691683938.5713778-CDS-L-elsbetiae_contig8743:66..504Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8743 67..504 +
1622816954.4613051-CDS-L-elsbetiae_contig8743:1731..18271622816954.4613051-CDS-L-elsbetiae_contig8743:1731..1827Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8743 1732..1827 +
1691683938.5838861-CDS-L-elsbetiae_contig8743:1731..18271691683938.5838861-CDS-L-elsbetiae_contig8743:1731..1827Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8743 1732..1827 +
1622816954.4721165-CDS-L-elsbetiae_contig8743:2361..24391622816954.4721165-CDS-L-elsbetiae_contig8743:2361..2439Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8743 2362..2439 +
1691683938.5948095-CDS-L-elsbetiae_contig8743:2361..24391691683938.5948095-CDS-L-elsbetiae_contig8743:2361..2439Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8743 2362..2439 +
1622816954.4825058-CDS-L-elsbetiae_contig8743:2496..25741622816954.4825058-CDS-L-elsbetiae_contig8743:2496..2574Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8743 2497..2574 +
1691683938.6064446-CDS-L-elsbetiae_contig8743:2496..25741691683938.6064446-CDS-L-elsbetiae_contig8743:2496..2574Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8743 2497..2574 +
1622816954.4924293-CDS-L-elsbetiae_contig8743:3659..37581622816954.4924293-CDS-L-elsbetiae_contig8743:3659..3758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8743 3660..3758 +
1691683938.6178603-CDS-L-elsbetiae_contig8743:3659..37581691683938.6178603-CDS-L-elsbetiae_contig8743:3659..3758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8743 3660..3758 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8743.17774.1

>prot_L-elsbetiae_contig8743.17774.1 ID=prot_L-elsbetiae_contig8743.17774.1|Name=mRNA_L-elsbetiae_contig8743.17774.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=263bp
VSLPWTDKRGVQRAALLTRTKAKPVVSNPLLMLATLLAWMGELPSDSLPE
KRRFLLPECLLSPQSPPTLGRRRRSSSSSSYNSNNNAAHDGGRSGGGGGG
GNPGSVPLSLGAAWLLAHLLFGRNAGGKVLRSFTARTRPDGKVCVYVGLS
GGEVAALAMVSCPLIGWSPRPEEVMQARALSEGGGSLCGYSVSPSEFVTD
TAAGGAAAAAELIRVGLAKAVEGRLALALQMEAACELVLGVFVTKSWSPD
REVMARVALGLRK
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mRNA from alignment at L-elsbetiae_contig8743:67..3758+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8743.17774.1 ID=mRNA_L-elsbetiae_contig8743.17774.1|Name=mRNA_L-elsbetiae_contig8743.17774.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3692bp|location=Sequence derived from alignment at L-elsbetiae_contig8743:67..3758+ (Laminarionema elsbetiae ELsaHSoW15)
GTGTCTCTTCCCTGGACCGACAAGCGAGGGGTCCAGCGCGCCGCGCTCCT GACGCGGACGAAGGCGAAGCCGGTGGTGAGTAACCCGCTCCTCATGCTGG CCACCCTGCTGGCGTGGATGGGGGAGCTCCCCTCGGACTCCCTGCCGGAG AAGAGGCGCTTCCTTCTCCCGGAGTGCCTGCTATCGCCGCAGTCGCCACC GACCCTTGGCCGCCGCCGCCGCAGCAGCAGCAGCAGCAGCTACAACAGCA ACAACAACGCAGCCCACGACGGCGGTAGGAGCGGCGGCGGCGGCGGCGGC GGCAACCCGGGAAGCGTGCCGCTATCTCTGGGGGCGGCGTGGTTGCTGGC GCACCTCCTGTTCGGGCGTAACGCCGGCGGCAAGGTGCTGCGGAGCTTCA CCGCAAGAACGCGCCCCGACGGCAAGGTGTGTGTTTATGTGATTCACGGT ACCCCTCCCGCGAGTGCTTGTGTGTGTGTGTGTGTGCACGTACGTGCGCA CGCGGTTTATCGGTCTATCATACCGCGCGACCGGCTGAGCTTGTCACGTC CTCGCCTCCGAATGGAAAGGAGTGCGCTTTGTGTTTTCAAACCTATCATG CTGTGCGACCGGCTAGATGTATCACGCTCTCGTCAATTGGGGAACTTCCA GAAAATGGGGAATGCCCAATTAGAGTGTGTTCTCTCACAAGAACCCCCCC CCCCCATGTGTTACCATCGACTGGGCTCCCTCCGAAGAGTAGTGTGCGCA TCCGCCGGCTGCGGTTGTCCGATGTTGGTAGCTTTGCTTTCTCCCTGGTG GGAAAGCAGCACCGTGGACACAATAATCGATTCGTCAGGCACCTGGCCCA CGCGCTCAATCAGCTGTGGTCCTCCTCCCCCCCCCCTCCGGCTTTGGAGA GAGCTTGAGAGGAGCCTTGTGCATCTGCAAACGCTGCTTCGCGTTCTGCG TGCTTATGCTCCCAAGACGTCTCCCTGCGCGAATGCATGCAGGCATCGAG TTATCGATATTTATGTATTTATAGAGTACCTCCATCGACGCCCGTCCTTC CGAGCGATAGCGATAAATGCAGCAGTCCTACTACGTGCTCCGGATTGCCA GCTCTCACACCCATGTTTATAGGGAAAAAATCTTGAAAATAAAAATCTTG GTGTATTTTGACCTTTGTGGCCACGTTTCTTCGCCACGAGCTCGGAATCA GATTTTCGCTTCTCAGGGACTTTCAAAGCTCTCCTCCTGAGGTTTACGGA TCAGCTGTCCAATCTGGCACACTCCGGGTTGGGTTGTTGACCTCGGAGCA AGATTTTGCTAGATTTGGCCAAGATTTACAAATTTTGCACATTTTGGCTG AATATTTGCGCTAACACGACTTTTTGGCCAGATCTTGCCCAGATCCAGCA AAATCTTGCTCCGAGAAAAACAACCAAACCCGGAGTGTGCCAGATTGGAC AGCTGATCCGTAAACCTCTGGAGGAGAGTTTTTGAAAGTCCCTGAGAAGC GAAAATCTGATTCCGAGCTCTTGGCGAGGAAAAGTGGCCACAAAGGTCAA AATACACCAAGATTTTTATTTTCAAGATTTTTTTTCCTATAAACATCGGC CTCAGCAGCACAGCCCTGTATCATTGGCGATTTGTTCCGCGCCCGACCAC GCCGTGCGTGTTTAGGTGGGACTCTCTGGAGGGGAGGTGGCAGCGCTGGC GATGGTGTCGTGTCCACTTATTGGCTGGAGCCCGAGGCCCGAAGAAGTGA TGCAGGCGAGGGTTTGCCGAGTTCCCCCAAGAAGGGTAACGGGATGGTTC TTGAGGTGCTGTGCTGTTTTCTTGTGGCCACGTTTCTTGTTGTGGCCATC TTGTTGCGACCATGTCGTTGCTGCTGCTGCTGCTGCTGCTGTTAGCGTTA GTGTGGTTGTTGCTGTTGTTGTTATGACCATGCTGTGGCCTGCTGCTGCT GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTTTGGTGT TGTTGCTGTGGTGGTGGTCGATGTCATCGTCGTCGTTCTCCTTATTCTTG CCGGTGCCAGTGGTTAATGTCCGTGTTTGGTGAGGCTGTTGTGTCTTGTT GTTGATAACGAACCCGCCGGTAGTTACCCCGCATTACCCCGCATTGTCCC GCAAAGCGAAACCGTCACGTCCGGCTTCCATGCCCCACCACCACATCGAG GCGACAAGCCCCGCTCTAAAATACATACCAGCCACCTCTCGCACACCAAA ACCCGTAAGCGTTCCTTGCGCCGCACGCCACCAACTGCTTCCCAGGCGCT GTCCGAAGGGGGGGGAAGCCTTTGCGGGTACTCGGTCTCGCCGTCGGAGT TCGTCACCGACACCGCGGCCGGGGTCGGCGGGGATGGAGCGGCGGCGGCG GGGGCGGCGGAGGGGGGGGGGGGGGCAGAGGGAGCGGCGGCCGCCGCCGA GCTCATTCGGGTTGGCTTGGCAAAGGCCGTCGAAGGGCGGCTGGCCCTGG CACTGCAGGTGTGGGAACAGTAGTGGGTATTGTTGTTGTTGTTGTTGTTG TTGTTGTTGCTGTTGCTATTGTTGCTGCTGTTGCTGTTGCTGTTGCTATT GTTGTTGTTGCTGCTGCTGCTGCTGTTGTTGCTGCTGCTGCTGTTGCTGC TGCTGTTGTTGTTGTTGTTGTCGTTGTGTTTGAGAACAGAACAGTGGCAG ATTTTCGGTTATCGATAATGATGATGTTGTTGCTGCTGCTGCTGTTGCTG TTGTTGTTTTGTTGGTGGCGGCGTTGGTTGGGGGGTGTTATTGCTGATTT GCTGCTGTTGGTGGTGTTTGCGCCATTCCTTGCTCGCCTACTTGCGCTTG CAGCTGGGGGGCTCGTACTACTGGTGCTGCTGTTGTACCCCGCCGTTCGT CCTTAGAAAGCGTATCGGCAACTACAAATATCTTCGCATTTGAGAACCAA TTTTATCAAGTACTGCTGGACCACCATAGATATATAATCCATGTATGCAT CCTCCAACACAGCAGTAACGTCGGTTGCGTTGACACGGGTCCTAAAGTAT GCCCGGTGCAGAAGGTGATGCTATTTGTATCTTTTCAACGAACCTAGCTG TAAGCATCGTACGCCTTTTCCGTGCTTTTTTTGTTTTTTCTTCTTCACAT TTATTTTTCCAGTGCTTGATGGGTTGATCTGCATGCCATGATGGACGGAT GTTACTTCATAGTAGTATGCGTTGGAGGGAAAATTCATGCGTTTCGTTGT CTTTCAACGAGTCGGCTATTGCCTGTGCGCCATCCCTTCGTGCCGGTGGC GTCATGAAGCTGGTGACTGGTGTGCTGACGCTGCTGCTGCTGCTGCTGCT GTTGTTCCTGGCCGTTCTGGGCTTCGAACGCATATTGACACATGTACATC ATACCCACGTATTTCAAAGAAAACCAATTGTTCGCATCTGAGAACCAATC TTTTCAGGTAAATACATACCTGCCATGGGTGTCTTCTCAACGAGCTCGCT CGCCTGTTTTGTAGTAGAGATACATACATAGGATCAGGGTTCATCTCCAT CCTCCGCCCTCTCCTATACCCTCCCTCCCCCCGCCACAAACAGATGGAAG CGGCCTGCGAGCTAGTCCTGGGCGTCTTTGTCACCAAGAGCTGGAGCCCG GACAGAGAAGTCATGGCCAGGGTTGCCCTGGGGCTACGGAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8743:67..3758+

>mRNA_L-elsbetiae_contig8743.17774.1 ID=mRNA_L-elsbetiae_contig8743.17774.1|Name=mRNA_L-elsbetiae_contig8743.17774.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1578bp|location=Sequence derived from alignment at L-elsbetiae_contig8743:67..3758+ (Laminarionema elsbetiae ELsaHSoW15)
GTGTCTCTTCCCTGGACCGACAAGCGAGGGGTCCAGCGCGCCGCGCTCCT
GACGCGGACGAAGGCGAAGCCGGTGGTGAGTAACCCGCTCCTCATGCTGG
CCACCCTGCTGGCGTGGATGGGGGAGCTCCCCTCGGACTCCCTGCCGGAG
AAGAGGCGCTTCCTTCTCCCGGAGTGCCTGCTATCGCCGCAGTCGCCACC
GACCCTTGGCCGCCGCCGCCGCAGCAGCAGCAGCAGCAGCTACAACAGCA
ACAACAACGCAGCCCACGACGGCGGTAGGAGCGGCGGCGGCGGCGGCGGC
GGCAACCCGGGAAGCGTGCCGCTATCTCTGGGGGCGGCGTGGTTGCTGGC
GCACCTCCTGTTCGGGCGTAACGCCGGCGGCAAGGTGCTGCGGAGCTTCA
CCGCAAGAACGCGCCCCGACGGCAAGGTGTGTGTTTATGTGTCTCTTCCC
TGGACCGACAAGCGAGGGGTCCAGCGCGCCGCGCTCCTGACGCGGACGAA
GGCGAAGCCGGTGGTGAGTAACCCGCTCCTCATGCTGGCCACCCTGCTGG
CGTGGATGGGGGAGCTCCCCTCGGACTCCCTGCCGGAGAAGAGGCGCTTC
CTTCTCCCGGAGTGCCTGCTATCGCCGCAGTCGCCACCGACCCTTGGCCG
CCGCCGCCGCAGCAGCAGCAGCAGCAGCTACAACAGCAACAACAACGCAG
CCCACGACGGCGGTAGGAGCGGCGGCGGCGGCGGCGGCGGCAACCCGGGA
AGCGTGCCGCTATCTCTGGGGGCGGCGTGGTTGCTGGCGCACCTCCTGTT
CGGGCGTAACGCCGGCGGCAAGGTGCTGCGGAGCTTCACCGCAAGAACGC
GCCCCGACGGCAAGGTGTGTGTTTATGTGGGACTCTCTGGAGGGGAGGTG
GCAGCGCTGGCGATGGTGTCGTGTCCACTTATTGGCTGGAGCCCGAGGCC
CGAAGAAGTGATGCAGGCGAGGGTGGGACTCTCTGGAGGGGAGGTGGCAG
CGCTGGCGATGGTGTCGTGTCCACTTATTGGCTGGAGCCCGAGGCCCGAA
GAAGTGATGCAGGCGAGGGCGCTGTCCGAAGGGGGGGGAAGCCTTTGCGG
GTACTCGGTCTCGCCGTCGGAGTTCGTCACCGACACCGCGGCCGGGGCGC
TGTCCGAAGGGGGGGGAAGCCTTTGCGGGTACTCGGTCTCGCCGTCGGAG
TTCGTCACCGACACCGCGGCCGGGGGAGCGGCGGCCGCCGCCGAGCTCAT
TCGGGTTGGCTTGGCAAAGGCCGTCGAAGGGCGGCTGGCCCTGGCACTGC
AGGGAGCGGCGGCCGCCGCCGAGCTCATTCGGGTTGGCTTGGCAAAGGCC
GTCGAAGGGCGGCTGGCCCTGGCACTGCAGATGGAAGCGGCCTGCGAGCT
AGTCCTGGGCGTCTTTGTCACCAAGAGCTGGAGCCCGGACAGAGAAGTCA
TGGCCAGGGTTGCCCTGGGGCTACGGAAGATGGAAGCGGCCTGCGAGCTA
GTCCTGGGCGTCTTTGTCACCAAGAGCTGGAGCCCGGACAGAGAAGTCAT
GGCCAGGGTTGCCCTGGGGCTACGGAAG
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