mRNA_L-elsbetiae_contig8036.17024.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8036.17024.1
Unique NamemRNA_L-elsbetiae_contig8036.17024.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig8036.17024.1 vs. uniprot
Match: D7FRP7_ECTSI (General transcription factor IIH subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRP7_ECTSI)

HSP 1 Score: 388 bits (996), Expect = 9.460e-133
Identity = 194/208 (93.27%), Postives = 204/208 (98.08%), Query Frame = 1
Query:    1 MDDIDDHDDNAGAGYAWEKGFERTWEGVEEDEHGNIKAREDGQRRSRRVRRRVGGQSIKRGMIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFITNYFDQNPLSQLGILVTREGRADKVTELSGNPKAHMEALTKDSDTKGEASLQNLLEMACTSLRAVPEYGNREVVVLYSSLSTCDPGDIHETIAKLKTHNVRASVVGLGAEM 624
            MD +DDHDDN GAGYAWEKGFERTWEGVEEDEHGNIK RE+GQRR+RRVRRRVGG+SIKRGMIRYLYLAIDLSKTM++GDMRPSRLAVTLRIVQDF+TNYFDQNPLSQLGILVTREGRA+K+TELSGNPKAHMEALTKDSDTKGEASLQNLLEMACTSLRAVPEYGNREVVV+YSSLSTCDPGDIHETIAKLKTH VRASVVGLGAEM
Sbjct:    1 MDAMDDHDDNDGAGYAWEKGFERTWEGVEEDEHGNIKTREEGQRRNRRVRRRVGGESIKRGMIRYLYLAIDLSKTMADGDMRPSRLAVTLRIVQDFVTNYFDQNPLSQLGILVTREGRAEKITELSGNPKAHMEALTKDSDTKGEASLQNLLEMACTSLRAVPEYGNREVVVIYSSLSTCDPGDIHETIAKLKTHKVRASVVGLGAEM 208          
BLAST of mRNA_L-elsbetiae_contig8036.17024.1 vs. uniprot
Match: A0A835ZF22_9STRA (General transcription factor IIH subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF22_9STRA)

HSP 1 Score: 251 bits (642), Expect = 2.210e-79
Identity = 128/196 (65.31%), Postives = 156/196 (79.59%), Query Frame = 1
Query:   40 GYAWEKGFERTWEGVEEDEHGNIKA-REDGQRRSRRVRRRVGGQSIKRGMIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFITNYFDQNPLSQLGILVTREGRADKVTELSGNPKAHMEALTKDSDTKGEASLQNLLEMACTSLRAVPEYGNREVVVLYSSLSTCDPGDIHETIAKLKTHNVRASVVGLGAEM 624
            GYAWEK FER+WE V+EDE GN+K   E   R SR  R  + GQ+IKRGMIRY++L IDLSK MSE DMRP+RLAVT ++V +F+  +FDQNPLSQLGI++TR+GRA++VT+LSGNPKAH+EAL +  DT+GE SLQNLLE+    L + PEYG+RE VVLY SL TCDPG+I +TIA LK H VR SVVGLGAE+
Sbjct:   24 GYAWEKSFERSWEDVQEDEQGNLKTDHERDARLSRGRRTALYGQAIKRGMIRYVFLCIDLSKGMSETDMRPNRLAVTTKVVAEFVRGFFDQNPLSQLGIIITRDGRAERVTDLSGNPKAHIEALARSLDTQGEPSLQNLLELTAHCLASAPEYGSREAVVLYGSLHTCDPGNILDTIALLKRHKVRCSVVGLGAEV 219          
BLAST of mRNA_L-elsbetiae_contig8036.17024.1 vs. uniprot
Match: A0A7S2Y0G9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0G9_9STRA)

HSP 1 Score: 216 bits (550), Expect = 6.690e-65
Identity = 118/222 (53.15%), Postives = 147/222 (66.22%), Query Frame = 1
Query:    7 DIDDHDDNAGAGYAWEKGFERTWEGVEEDEHGNIKAREDGQRR----------------SRRVRRRVGGQSIKRGMIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFITNYFDQNPLSQLGILVTREGRADKVTELSGNPKAHMEALTKDSDTKGEASLQNLLEMACTSLRAVPEYGNREVVVLYSSLSTCDPGDIHETIAKLKTHNVRASVVGLGAEM 624
            D+   D+    GYAWEKGFERTWE VEEDE G ++  E   RR                S+         ++KRGMIR LYLA+DLSK M+EGD RP+R+A     + DFI  YFDQNPLSQLGI++TR+G   +V+ELSG+P+A + AL +   T+G ASLQN LEMA  SL+A PEY +REVVV+Y SLSTCDPGDIH T+ +L+   VR SVV L AE+
Sbjct:   18 DLTQCDEGQEGGYAWEKGFERTWEAVEEDEDGRLQLEELDSRRQLLEXXXXXXLLLEDYSQDPSAAGTAGAVKRGMIRSLYLALDLSKAMAEGDFRPNRMAAAAAALIDFIQEYFDQNPLSQLGIVITRDGICQRVSELSGSPQAQVNALKRALHTRGSASLQNTLEMALASLKATPEYASREVVVVYGSLSTCDPGDIHATLERLQKARVRVSVVHLSAEL 239          
BLAST of mRNA_L-elsbetiae_contig8036.17024.1 vs. uniprot
Match: A0A433Q0F6_9FUNG (VWFA domain-containing protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433Q0F6_9FUNG)

HSP 1 Score: 201 bits (511), Expect = 6.430e-61
Identity = 106/211 (50.24%), Postives = 152/211 (72.04%), Query Frame = 1
Query:    7 DIDDHDDNAGAGYAWEKGFERTWEGVEEDEHGNIK---AREDGQRRSRRVRRRVGGQSIKRGMIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFITNYFDQNPLSQLGILVTREGRADKVTELSGNPKAHMEALT--KDSDTKGEASLQNLLEMACTSLRAVPEYGNREVVVLYSSLSTCDPGDIHETIAKLKTHNVRASVVGLGAEM 624
            D+   +D    GY WE+ ++R+W+ ++ED  G ++   A+   Q + RR+ R     +I+RG+IR+L+L IDLS+TM+E D+RPSRL +TL   + F+  YFDQNP+SQLGI++TR+G A+K+TELSGNP  H+ AL   K+ +T GE SLQN LE+A  SL  +P +G+REVV+++ +L+TCDPG+I+ETI  LK  NVR SVVGL AE+
Sbjct:   21 DVHGSEDPPQKGYDWEQEYKRSWDVLQEDSEGRLESAVAQLQQQAKRRRLLRDTA--TIQRGIIRHLFLVIDLSETMNEKDLRPSRLDLTLSYAEQFVLEYFDQNPISQLGIILTRDGVAEKLTELSGNPMEHVRALKNKKNQETSGEPSLQNALEVARASLTHIPSHGSREVVIIFGALTTCDPGNIYETIENLKKENVRVSVVGLAAEV 229          
BLAST of mRNA_L-elsbetiae_contig8036.17024.1 vs. uniprot
Match: A0A8H7UFT1_9FUNG (General transcription and DNA repair factor IIH n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7UFT1_9FUNG)

HSP 1 Score: 206 bits (523), Expect = 9.160e-61
Identity = 106/211 (50.24%), Postives = 154/211 (72.99%), Query Frame = 1
Query:    7 DIDDHDDNAGAGYAWEKGFERTWEGVEEDEHGNIK---AREDGQRRSRRVRRRVGGQSIKRGMIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFITNYFDQNPLSQLGILVTREGRADKVTELSGNPKAHMEALT--KDSDTKGEASLQNLLEMACTSLRAVPEYGNREVVVLYSSLSTCDPGDIHETIAKLKTHNVRASVVGLGAEM 624
            D  +++DN   GY+WE+ ++R+W+ ++ED  G +    A    Q + RR+ R     +++RG+IR+L+L IDLS+ M+E D+RPSRL +TL   + F+T YFDQNP+SQLGI+V R+G A+++T+LSGNP  H+ AL   ++ +T GE SLQN L+MAC SL  VP +G+REV+V+Y SL+TCDPGDI++TIA+LK  +VR S VGL AE+
Sbjct:   21 DTHENEDNQQGGYSWEEEYKRSWDVLQEDAEGRLSSVVAHLQQQMKRRRLLRDTA--TVQRGIIRHLFLVIDLSEAMNEKDLRPSRLELTLTYARQFVTEYFDQNPISQLGIIVIRDGVAERLTDLSGNPTDHLRALKNKRNQETSGEPSLQNALDMACASLVNVPSHGSREVLVVYGSLTTCDPGDIYDTIAQLKKEHVRVSFVGLAAEI 229          
BLAST of mRNA_L-elsbetiae_contig8036.17024.1 vs. uniprot
Match: A0A8H7PGK2_MORIS (General transcription and DNA repair factor IIH n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PGK2_MORIS)

HSP 1 Score: 204 bits (519), Expect = 3.600e-60
Identity = 105/211 (49.76%), Postives = 152/211 (72.04%), Query Frame = 1
Query:    7 DIDDHDDNAGAGYAWEKGFERTWEGVEEDEHGNIK---AREDGQRRSRRVRRRVGGQSIKRGMIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFITNYFDQNPLSQLGILVTREGRADKVTELSGNPKAHMEALT--KDSDTKGEASLQNLLEMACTSLRAVPEYGNREVVVLYSSLSTCDPGDIHETIAKLKTHNVRASVVGLGAEM 624
            D  +++D  G GY+WE+ ++R+W+ ++ED  G +    A+   Q + RR+ R     +++RG+IR+ +L IDLS+ M+E D+RPSRL +TL   + F+  YFDQNP+SQLGI+V R+G A+++T+LSGNP  H+ AL   ++ +T GE SLQN L+MAC SL  VP +G+REV+V+Y SL+TCDPGDI++TIA LK  NVR S VGL AE+
Sbjct:   32 DTHENEDAQGGGYSWEEEYKRSWDVLQEDSEGRLSSVVAQLQQQMKRRRLLRDTA--TVQRGIIRHFFLVIDLSEAMNEKDLRPSRLELTLTYAKQFVMEYFDQNPISQLGIIVIRDGIAERLTDLSGNPTDHLRALKNKRNQETSGEPSLQNALDMACASLVNVPSHGSREVLVIYGSLTTCDPGDIYDTIATLKKENVRVSFVGLAAEI 240          
BLAST of mRNA_L-elsbetiae_contig8036.17024.1 vs. uniprot
Match: A0A1C7N3N9_9FUNG (General transcription and DNA repair factor IIH n=2 Tax=Mucorineae TaxID=1344963 RepID=A0A1C7N3N9_9FUNG)

HSP 1 Score: 198 bits (504), Expect = 1.840e-58
Identity = 99/204 (48.53%), Postives = 150/204 (73.53%), Query Frame = 1
Query:   22 DDNAGAGYAWEKGFERTWEGVEEDEHGNIKAREDGQRRSRRVRRRVGGQSI-KRGMIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFITNYFDQNPLSQLGILVTREGRADKVTELSGNPKAHMEA--LTKDSDTKGEASLQNLLEMACTSLRAVPEYGNREVVVLYSSLSTCDPGDIHETIAKLKTHNVRASVVGLGAEM 624
            DD+   GYAWE+ ++R+W+ ++ED  G + +     ++ R+ RR +   +I +RG+IR+L+L IDLS+ M+E D+RPSR+ +TL   Q F+  +FDQNP+SQLGI++TR+G A+K+TELSGNP  H++A  L K+++T GE SLQN L++A  S+  VP +G++EV++L+ SL+TCDP DIHET+  LK   VR ++VGL AE+
Sbjct:   24 DDHGNGGYAWEEEYKRSWDILQEDAEGRLSSVVSQLQQQRKRRRLLKDTAIIQRGIIRHLFLVIDLSEAMNEKDLRPSRVELTLTYAQQFVVEFFDQNPISQLGIIITRDGIAEKLTELSGNPTDHIKAIKLKKNTETSGEPSLQNALQLARASMLGVPSHGSKEVLLLFGSLTTCDPADIHETVQLLKKEMVRVNIVGLAAEV 227          
BLAST of mRNA_L-elsbetiae_contig8036.17024.1 vs. uniprot
Match: A0A1X2HRH6_SYNRA (General transcription and DNA repair factor IIH n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HRH6_SYNRA)

HSP 1 Score: 198 bits (503), Expect = 2.290e-58
Identity = 106/216 (49.07%), Postives = 158/216 (73.15%), Query Frame = 1
Query:    7 DIDD-----HDDNAG-AGYAWEKGFERTWEGVEEDEHGNIKAREDGQRRSRRVRRRVGGQS--IKRGMIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFITNYFDQNPLSQLGILVTREGRADKVTELSGNPKAHMEALT--KDSDTKGEASLQNLLEMACTSLRAVPEYGNREVVVLYSSLSTCDPGDIHETIAKLKTHNVRASVVGLGAEM 624
            D+DD      DD+AG AGY+WE+ ++R+W+ ++EDE G + +    Q + +R RRR+   +  I+RG+IR+L+L IDLS+ M+E D+RPSR+ +TL   + F+  +FDQNP+SQLGI+VTR+G A+K+TELSGNP  H  AL   K +DT GE SLQN L++A +S+  VP +G++E+++++ +L+TCDP DIHETI  L+  NVR ++VGL AE+
Sbjct:   12 DVDDTFDGNQDDDAGKAGYSWEEEYKRSWDILQEDEEGRLSS-VVAQLQQQRKRRRLLKDTAVIQRGIIRHLFLVIDLSEAMNERDLRPSRVELTLTYAEQFVYEFFDQNPISQLGIIVTRDGIAEKLTELSGNPNDHARALKAGKKTDTSGEPSLQNALQLARSSMVGVPSHGSKEILMVFGALTTCDPSDIHETIDLLQKENVRVNIVGLAAEV 226          
BLAST of mRNA_L-elsbetiae_contig8036.17024.1 vs. uniprot
Match: A0A6G0W889_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W889_9STRA)

HSP 1 Score: 197 bits (500), Expect = 2.510e-58
Identity = 99/199 (49.75%), Postives = 140/199 (70.35%), Query Frame = 1
Query:   40 GYAWEKGFERTWEGVEEDEHGNIK----AREDGQRRSRRVRRRVGGQSIKRGMIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFITNYFDQNPLSQLGILVTREGRADKVTELSGNPKAHMEALTKDSDTKGEASLQNLLEMACTSLRAVPEYGNREVVVLYSSLSTCDPGDIHETIAKLKTHNVRASVVGLGAEM 624
            GYAWE  FER+W+G+EEDE G +K    A   G +   R+RR+   Q +++G+IRY+++ +DLSK MS+ D +P R AV    VQ FI +YFDQNP+SQLG++  +  +A+K+T+LSGNP  HME L +     GE SLQN LEMA  +L+ VP YG++E++V+Y SL+T DPGDI  T++ L+  ++R S VG+GAEM
Sbjct:    9 GYAWEGSFERSWDGIEEDESGALKVHSIAASSGDKA--RLRRQQMLQRVRKGLIRYVFVIVDLSKGMSQKDWKPHRCAVVTEEVQRFIADYFDQNPISQLGLIGIKSAKAEKLTDLSGNPSQHMEVLKRALTVHGEPSLQNALEMARNALKIVPSYGSKEIIVVYGSLTTTDPGDIFATLSSLQRESIRCSFVGMGAEM 205          
BLAST of mRNA_L-elsbetiae_contig8036.17024.1 vs. uniprot
Match: A0A0L0HAK2_SPIPD (General transcription and DNA repair factor IIH n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0HAK2_SPIPD)

HSP 1 Score: 198 bits (503), Expect = 4.090e-58
Identity = 106/215 (49.30%), Postives = 157/215 (73.02%), Query Frame = 1
Query:    1 MDDIDDHD--DNAGAGYAWEKGFERTWEGVEEDEHGNIK---AREDGQRRSRRVRRRVGGQSIKRGMIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFITNYFDQNPLSQLGILVTREGRADKVTELSGNPKAHMEALTKDS--DTKGEASLQNLLEMACTSLRAVPEYGNREVVVLYSSLSTCDPGDIHETIAKLKTHNVRASVVGLGAEM 624
            +DD + HD    +G GY+WE+ ++R+W+ ++EDE G+++   A    Q + RR+ R     +++RG+IR+LYL IDLS+ M+E D++PSR+  T+R+ ++FI  YFDQNPLSQLGI++TR+G A+++TEL+GNP  H  AL K S  + KGE SLQN LE+A TSL  VP +G+RE++VLY+SL+TCDP +I +T+  LK   +R S+VGL AE+
Sbjct:   22 IDDDEGHDLMGASGQGYSWEEEYKRSWDILQEDEQGSLQGVVASIQQQLKRRRLHRDTA--TVQRGIIRHLYLVIDLSRAMAELDLKPSRIECTMRLAEEFIGEYFDQNPLSQLGIIITRDGLAEQLTELTGNPTDHTSALQKRSNREPKGEPSLQNALELARTSLAHVPSHGSREILVLYASLTTCDPDNILDTLESLKRECIRVSMVGLSAEV 234          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8036.17024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRP7_ECTSI9.460e-13393.27General transcription factor IIH subunit n=2 Tax=E... [more]
A0A835ZF22_9STRA2.210e-7965.31General transcription factor IIH subunit n=1 Tax=T... [more]
A0A7S2Y0G9_9STRA6.690e-6553.15Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A433Q0F6_9FUNG6.430e-6150.24VWFA domain-containing protein n=1 Tax=Endogone sp... [more]
A0A8H7UFT1_9FUNG9.160e-6150.24General transcription and DNA repair factor IIH n=... [more]
A0A8H7PGK2_MORIS3.600e-6049.76General transcription and DNA repair factor IIH n=... [more]
A0A1C7N3N9_9FUNG1.840e-5848.53General transcription and DNA repair factor IIH n=... [more]
A0A1X2HRH6_SYNRA2.290e-5849.07General transcription and DNA repair factor IIH n=... [more]
A0A6G0W889_9STRA2.510e-5849.75Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A0L0HAK2_SPIPD4.090e-5849.30General transcription and DNA repair factor IIH n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8036contigL-elsbetiae_contig8036:5529..8987 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score391.3
Seed ortholog evalue2.8e-106
Seed eggNOG ortholog2880.D7FRP7
Preferred nameGTF2H2
KEGG rclassRC00002,RC00078
KEGG koko:K00889,ko:K01177,ko:K03142,ko:K14766
KEGG ReactionR02112,R03469,R11262
KEGG Pathwayko00500,ko00562,ko01100,ko03022,ko03420,ko04011,ko04070,ko04072,ko04139,ko04144,ko04666,ko04810,ko05203,ko05231,map00500,map00562,map01100,map03022,map03420,map04011,map04070,map04072,map04139,map04144,map04666,map04810,map05203,map05231
KEGG ModuleM00130,M00290
Hectar predicted targeting categoryother localisation
GOsGO:0000109,GO:0000112,GO:0000428,GO:0000438,GO:0000439,GO:0000988,GO:0000990,GO:0000991,GO:0001109,GO:0001111,GO:0001112,GO:0001113,GO:0001120,GO:0002029,GO:0002031,GO:0003674,GO:0003676,GO:0003700,GO:0003723,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005675,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006293,GO:0006294,GO:0006296,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006412,GO:0006464,GO:0006468,GO:0006518,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006898,GO:0006950,GO:0006974,GO:0008135,GO:0008150,GO:0008152,GO:0008277,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009452,GO:0009628,GO:0009889,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010646,GO:0010648,GO:0016043,GO:0016070,GO:0016071,GO:0016192,GO:0016310,GO:0016567,GO:0016591,GO:0016604,GO:0016607,GO:0016740,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019787,GO:0022401,GO:0022607,GO:0023051,GO:0023057,GO:0023058,GO:0030880,GO:0031323,GO:0031326,GO:0031334,GO:0031623,GO:0031974,GO:0031981,GO:0032446,GO:0032774,GO:0032806,GO:0032991,GO:0033554,GO:0033683,GO:0034367,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0036260,GO:0043043,GO:0043112,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043412,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045744,GO:0046483,GO:0047485,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051179,GO:0051234,GO:0051252,GO:0051716,GO:0055029,GO:0060255,GO:0061630,GO:0061659,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070647,GO:0070816,GO:0070911,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090575,GO:0097159,GO:0097659,GO:0098657,GO:0140096,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1902554,GO:1902911,GO:1903506,GO:1990234,GO:1990391,GO:2000112,GO:2001141
EggNOG free text desc.nucleotide-excision repair
EggNOG OGsCOG5151@1,KOG2807@2759
EC2.7.1.68,3.2.1.2
COG Functional cat.KL
CAZyGH14
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03021,ko03400,ko04131
Ec32 ortholog descriptionGeneral transcription factor II H, polypeptide 2
Ec32 orthologEc-00_003360.1
Exons5
Model size645
Cds size645
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8036.17024.1prot_L-elsbetiae_contig8036.17024.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8036 5529..8987 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816888.7294233-CDS-L-elsbetiae_contig8036:5528..56921622816888.7294233-CDS-L-elsbetiae_contig8036:5528..5692Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8036 5529..5692 +
1691683889.0730286-CDS-L-elsbetiae_contig8036:5528..56921691683889.0730286-CDS-L-elsbetiae_contig8036:5528..5692Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8036 5529..5692 +
1622816888.7399566-CDS-L-elsbetiae_contig8036:6353..65331622816888.7399566-CDS-L-elsbetiae_contig8036:6353..6533Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8036 6354..6533 +
1691683889.086299-CDS-L-elsbetiae_contig8036:6353..65331691683889.086299-CDS-L-elsbetiae_contig8036:6353..6533Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8036 6354..6533 +
1622816888.7499156-CDS-L-elsbetiae_contig8036:7185..72701622816888.7499156-CDS-L-elsbetiae_contig8036:7185..7270Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8036 7186..7270 +
1691683889.0969462-CDS-L-elsbetiae_contig8036:7185..72701691683889.0969462-CDS-L-elsbetiae_contig8036:7185..7270Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8036 7186..7270 +
1622816888.7603242-CDS-L-elsbetiae_contig8036:8101..81791622816888.7603242-CDS-L-elsbetiae_contig8036:8101..8179Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8036 8102..8179 +
1691683889.108038-CDS-L-elsbetiae_contig8036:8101..81791691683889.108038-CDS-L-elsbetiae_contig8036:8101..8179Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8036 8102..8179 +
1622816888.7754366-CDS-L-elsbetiae_contig8036:8849..89871622816888.7754366-CDS-L-elsbetiae_contig8036:8849..8987Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8036 8850..8987 +
1691683889.1174579-CDS-L-elsbetiae_contig8036:8849..89871691683889.1174579-CDS-L-elsbetiae_contig8036:8849..8987Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8036 8850..8987 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8036.17024.1

>prot_L-elsbetiae_contig8036.17024.1 ID=prot_L-elsbetiae_contig8036.17024.1|Name=mRNA_L-elsbetiae_contig8036.17024.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=215bp
MDDIDDHDDNAGAGYAWEKGFERTWEGVEEDEHGNIKAREDGQRRSRRVR
RRVGGQSIKRGMIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFITNY
FDQNPLSQLGILVTREGRADKVTELSGNPKAHMEALTKDSDTKGEASLQN
LLEMACTSLRAVPEYGNREVVVLYSSLSTCDPGDIHETIAKLKTHNVRAS
VVGLGAEMVREVVP*
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mRNA from alignment at L-elsbetiae_contig8036:5529..8987+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8036.17024.1 ID=mRNA_L-elsbetiae_contig8036.17024.1|Name=mRNA_L-elsbetiae_contig8036.17024.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3459bp|location=Sequence derived from alignment at L-elsbetiae_contig8036:5529..8987+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACGACATCGACGACCACGACGATAATGCGGGTGCAGGGTATGCATG GGAGAAAGGCTTTGAGAGGACCTGGGAGGGAGTTGAGGAGGACGAGCACG GGAACATCAAGGCGCGGGAGGATGGGCAGAGACGAAGTCGTCGAGTGCGG CGACGAGTGGGAGGGTGAGAGAGAGAAAGAGTATGTGCTGATGTCCGCAA GGCCCAGGTCCCGCGGCATTAATAAGTTTCCTGACGAGAAAATGAATACT AATATGTAGGTGACATTGAAAACGGCATTTTTGACGTGTTTGGAATTTAC TCATAGACTATGTATCTATCCACCGATCACCCACAGGCCCGACCGCACAT GGACTTGACTAAGGACATGAGCTCAGTTACATCCACACCACATGCACTCC CCGATGAACAGGATAGTGTCATGATAAGTAACCTTTTCCTCGAGCACAGT GCCTACTCGCCTTAGCTGTACGTGAGTTATGCACTCTGCAGAGACCTGTG CAATATCTGTGTAGAGTCACAATAGAGTCATTCCGGAGAGATATCTCGAC TAGACATCGGTGTCGCTGCCACCAAGCCACAGCTGCGTGCCGCACGCTAT TCTCTGTGTCGAGTACGATCCGTTTCGTCATGGTGCTGCTCGTTCGCGGT GGGCCCTTTTCCGCGGGCAGACAAACAAGAGAAGCGAGGCGTATGCACGT ATGCACACCTACATACCTCCCTGTGGCTCTCATCATTTTCGCAACCCTTT CGCGCGCGAAACCCACCACGCCGCTGCCGGCTCGGCGACACTACCGTTGT AACACCGCGACCCTTTGCTGTGCAGGCAGTCCATCAAGCGAGGGATGATC CGCTACCTGTACCTGGCGATAGACCTGTCGAAAACCATGTCCGAGGGTGA CATGCGGCCGAGCAGGCTCGCGGTGACACTCCGCATCGTGCAGGACTTCA TCACGAACTACTTCGACCAGAACCCGCTCAGTCAACTGGGCATTCTCGTC ACCCGGTGAGAGAGAGGGAGGTAGAGGCAAAGAGGCACAGAAGTACGGAG GCATCAGTGCGAGAACCAGGCCGTACGCAGACGCACACACATGCACACAC ACACACACACACACACACACGTGTACCTGCATGGTTGGCACACGTGAAAC GTAGAACCGGGACCCCCTCTCGCATAACCGCAACTCTGGAGTAAGGAGGA GGAGTGGATACAGGGTGCATGGGGGTGTTCAAGCGCGCTAGCGCTACGAC AGTGGCATTGTGTGCAAGAGGAAATAATAGTGTAGACCCCGGAAATCATA AAGTGCGTAGACCCGCCGAATGAAGGTGACGCTTGATCATGCAATTAAAG CCGCCGAATTTTATTGGAAGCATTTTAAGGCGTGAAAACAACGTCACGTT TCACCACTATTATATCTCTTCCCCCTCTCTCTCTCTCTTTCTCTCGTCTC TTGGCCCCATTCCTCTCTTGACGGCTCGGGGCGCACATCCCTCTTGCGTT GCCGCGGCCGCCTTTTCCCTCTCTCACCCCCCCCCCCCACCCTCCCTCCC CCCCCCCGCCCCATACCCGCTTGCATCTGCTGGTCGCCTCCATGTGCGCG GTGATGGCTTGGTGCATTCGATCTGATTGGTTGATCGGGACGCTGTACGC CGCCCAGCGAGGGCCGTGCCGACAAGGTGACGGAACTGTCTGGGAATCCC AAGGCGCACATGGAAGCGCTGACCAAGGACTCAGACACCAAGGTGAGGCG GTCCCATGGAGACAGGCAGGCGGACACAAGTCAGAAACAGGAGCACGTAT TCATCGATGCTGCCGCAACGCCGCGGCTGCGGCGCGGTGGGATGGGAAGA CGCGGGCGGACACAACAACAGCAGTGGCAGGCTTGTTGGTTGGGTTTGTT TTGCCGTAAGCATGTTCTGTGTGTTGGGCGCCGTTTTTGACGTTTGGCTG GCACACGGGCGGCAGGGTTAGGTTTGTATCTAGGATCGATCCGATCATCT TCGGCATGTTGCACTCTCCGCCCTTGTGGGTCAGTAAGTGTGTGCGTTTT TAACAGTAGCATGGCATCTGTAATGGGAAAGCGCCCACCCCCCAGCAAGA AAACAAAACCGCCGCTATTAATAGCACCCGAACTTGCCAGCCTCTACATG CCGAACTGCGTCATGATGGCCATCACACAGACCGTGCAACAACATGCAGT CAAGTCGGCTCTCCTGCTCCTTGTGTGCGTTCCATGTGAGAGCCAAGCTA CCTAGATACTCTGAAGATCTTCAAAACATGGCATACAGCAGTCAATCAAT CGGTCGATGCGGGACCATCTTTGTTGCCAGGAAAAAAGAAATGGCCTGCT TTTGTTTCCCGCAGCCAATAATTGTTTGCAGCCAAGACTGCCGAGGCTCG TGCGCGCCAATCGTTCTAGGCTGTGGTTTGGGTGGAAGGCTGCAGAAGAT GATCGATGATAGGTGGACTGCCTGTGTTAACTCACCCACTTCCCCACGAC CCCTCCCTCTTGCGCGTCGCCTGCTCCAACTTTCGTAAATGCCGGCTTGC TGGTGCTGCTGGTGCTGCCGCAGGGCGAAGCGTCCCTCCAAAACCTGTTG GAGATGGCGTGCACGTCGCTCCGAGCGGTACCGGAGTACGGTAACAGAGA GGTATGGTGATATGGTAGACCGGGGTATGCGTAGCGTGCGTGTGGCTACA CCCCCCCCCCCCCACCCACCCCCTCCCGTTTCATTGGCCAGAGGAATGGA GGACACCCGAAGCAAGTGACAGGAAGAACGTGTGAGAATAGCTGGTATTC GCAGAATTTGTCAGTTCGGTCAGAAGTGCTGGCGGAGATCGTTTTTTTTG TTACCGTTGTTGTTGAGTTGTTTTCGTTGATACCGACAACGACCGCGGCG TTGGAAAGCCGCGTTTGTTGGCGAAGCTGCAACAAGGAAGGTTAAGGTTC CACAACAAGGCAATGCGTCCCTGCCGCCCCCAAAGATGATCGTCCAGAGA CGAATGATCTAAGGCTAACGATCTAAGACAAACGACCAAAGACTAACGAT CTAAGGCTAGCGATTATAAGGCTAGCGATCCGAGATTAACAATCCAACGC TGGCGATCTTAGGCTAGCGATGGAAGGCTCACGATGTAAGACCAACGATC TATGACGAACGATCTAAGACTGAACGAATACCTTGCAGCGCGCGCACCAA GCATAAGCATTCAGTTCGCCGCCTCGCGTCGCCCAGCCCCACCCGCGGGC TGCCATCGCCATCGCACAAATTTACTGACGTAAATATGTTGGCTGCAACA ACAAAAACAACGACGAAAAAGGTGGTGGTGCTTTACAGCAGCTTGAGCAC CTGCGATCCGGGGGATATCCACGAGACGATCGCGAAGCTCAAGACCCACA ATGTGCGCGCGTCGGTGGTCGGTCTCGGAGCGGAGATGGTGAGAGAGGTT GTACCGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8036:5529..8987+

>mRNA_L-elsbetiae_contig8036.17024.1 ID=mRNA_L-elsbetiae_contig8036.17024.1|Name=mRNA_L-elsbetiae_contig8036.17024.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1290bp|location=Sequence derived from alignment at L-elsbetiae_contig8036:5529..8987+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACGACATCGACGACCACGACGATAATGCGGGTGCAGGGTATGCATG
GGAGAAAGGCTTTGAGAGGACCTGGGAGGGAGTTGAGGAGGACGAGCACG
GGAACATCAAGGCGCGGGAGGATGGGCAGAGACGAAGTCGTCGAGTGCGG
CGACGAGTGGGAGGATGGACGACATCGACGACCACGACGATAATGCGGGT
GCAGGGTATGCATGGGAGAAAGGCTTTGAGAGGACCTGGGAGGGAGTTGA
GGAGGACGAGCACGGGAACATCAAGGCGCGGGAGGATGGGCAGAGACGAA
GTCGTCGAGTGCGGCGACGAGTGGGAGGGCAGTCCATCAAGCGAGGGATG
ATCCGCTACCTGTACCTGGCGATAGACCTGTCGAAAACCATGTCCGAGGG
TGACATGCGGCCGAGCAGGCTCGCGGTGACACTCCGCATCGTGCAGGACT
TCATCACGAACTACTTCGACCAGAACCCGCTCAGTCAACTGGGCATTCTC
GTCACCCGGCAGTCCATCAAGCGAGGGATGATCCGCTACCTGTACCTGGC
GATAGACCTGTCGAAAACCATGTCCGAGGGTGACATGCGGCCGAGCAGGC
TCGCGGTGACACTCCGCATCGTGCAGGACTTCATCACGAACTACTTCGAC
CAGAACCCGCTCAGTCAACTGGGCATTCTCGTCACCCGCGAGGGCCGTGC
CGACAAGGTGACGGAACTGTCTGGGAATCCCAAGGCGCACATGGAAGCGC
TGACCAAGGACTCAGACACCAAGCGAGGGCCGTGCCGACAAGGTGACGGA
ACTGTCTGGGAATCCCAAGGCGCACATGGAAGCGCTGACCAAGGACTCAG
ACACCAAGGGCGAAGCGTCCCTCCAAAACCTGTTGGAGATGGCGTGCACG
TCGCTCCGAGCGGTACCGGAGTACGGTAACAGAGAGGGCGAAGCGTCCCT
CCAAAACCTGTTGGAGATGGCGTGCACGTCGCTCCGAGCGGTACCGGAGT
ACGGTAACAGAGAGGTGGTGGTGCTTTACAGCAGCTTGAGCACCTGCGAT
CCGGGGGATATCCACGAGACGATCGCGAAGCTCAAGACCCACAATGTGCG
CGCGTCGGTGGTCGGTCTCGGAGCGGAGATGGTGAGAGAGGTTGTACCGT
AGGTGGTGGTGCTTTACAGCAGCTTGAGCACCTGCGATCCGGGGGATATC
CACGAGACGATCGCGAAGCTCAAGACCCACAATGTGCGCGCGTCGGTGGT
CGGTCTCGGAGCGGAGATGGTGAGAGAGGTTGTACCGTAG
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