mRNA_L-elsbetiae_contig8036.17024.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig8036.17024.1 vs. uniprot
Match: D7FRP7_ECTSI (General transcription factor IIH subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRP7_ECTSI) HSP 1 Score: 388 bits (996), Expect = 9.460e-133 Identity = 194/208 (93.27%), Postives = 204/208 (98.08%), Query Frame = 1 Query: 1 MDDIDDHDDNAGAGYAWEKGFERTWEGVEEDEHGNIKAREDGQRRSRRVRRRVGGQSIKRGMIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFITNYFDQNPLSQLGILVTREGRADKVTELSGNPKAHMEALTKDSDTKGEASLQNLLEMACTSLRAVPEYGNREVVVLYSSLSTCDPGDIHETIAKLKTHNVRASVVGLGAEM 624 MD +DDHDDN GAGYAWEKGFERTWEGVEEDEHGNIK RE+GQRR+RRVRRRVGG+SIKRGMIRYLYLAIDLSKTM++GDMRPSRLAVTLRIVQDF+TNYFDQNPLSQLGILVTREGRA+K+TELSGNPKAHMEALTKDSDTKGEASLQNLLEMACTSLRAVPEYGNREVVV+YSSLSTCDPGDIHETIAKLKTH VRASVVGLGAEM Sbjct: 1 MDAMDDHDDNDGAGYAWEKGFERTWEGVEEDEHGNIKTREEGQRRNRRVRRRVGGESIKRGMIRYLYLAIDLSKTMADGDMRPSRLAVTLRIVQDFVTNYFDQNPLSQLGILVTREGRAEKITELSGNPKAHMEALTKDSDTKGEASLQNLLEMACTSLRAVPEYGNREVVVIYSSLSTCDPGDIHETIAKLKTHKVRASVVGLGAEM 208
BLAST of mRNA_L-elsbetiae_contig8036.17024.1 vs. uniprot
Match: A0A835ZF22_9STRA (General transcription factor IIH subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF22_9STRA) HSP 1 Score: 251 bits (642), Expect = 2.210e-79 Identity = 128/196 (65.31%), Postives = 156/196 (79.59%), Query Frame = 1 Query: 40 GYAWEKGFERTWEGVEEDEHGNIKA-REDGQRRSRRVRRRVGGQSIKRGMIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFITNYFDQNPLSQLGILVTREGRADKVTELSGNPKAHMEALTKDSDTKGEASLQNLLEMACTSLRAVPEYGNREVVVLYSSLSTCDPGDIHETIAKLKTHNVRASVVGLGAEM 624 GYAWEK FER+WE V+EDE GN+K E R SR R + GQ+IKRGMIRY++L IDLSK MSE DMRP+RLAVT ++V +F+ +FDQNPLSQLGI++TR+GRA++VT+LSGNPKAH+EAL + DT+GE SLQNLLE+ L + PEYG+RE VVLY SL TCDPG+I +TIA LK H VR SVVGLGAE+ Sbjct: 24 GYAWEKSFERSWEDVQEDEQGNLKTDHERDARLSRGRRTALYGQAIKRGMIRYVFLCIDLSKGMSETDMRPNRLAVTTKVVAEFVRGFFDQNPLSQLGIIITRDGRAERVTDLSGNPKAHIEALARSLDTQGEPSLQNLLELTAHCLASAPEYGSREAVVLYGSLHTCDPGNILDTIALLKRHKVRCSVVGLGAEV 219
BLAST of mRNA_L-elsbetiae_contig8036.17024.1 vs. uniprot
Match: A0A7S2Y0G9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0G9_9STRA) HSP 1 Score: 216 bits (550), Expect = 6.690e-65 Identity = 118/222 (53.15%), Postives = 147/222 (66.22%), Query Frame = 1 Query: 7 DIDDHDDNAGAGYAWEKGFERTWEGVEEDEHGNIKAREDGQRR----------------SRRVRRRVGGQSIKRGMIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFITNYFDQNPLSQLGILVTREGRADKVTELSGNPKAHMEALTKDSDTKGEASLQNLLEMACTSLRAVPEYGNREVVVLYSSLSTCDPGDIHETIAKLKTHNVRASVVGLGAEM 624 D+ D+ GYAWEKGFERTWE VEEDE G ++ E RR S+ ++KRGMIR LYLA+DLSK M+EGD RP+R+A + DFI YFDQNPLSQLGI++TR+G +V+ELSG+P+A + AL + T+G ASLQN LEMA SL+A PEY +REVVV+Y SLSTCDPGDIH T+ +L+ VR SVV L AE+ Sbjct: 18 DLTQCDEGQEGGYAWEKGFERTWEAVEEDEDGRLQLEELDSRRQLLEXXXXXXLLLEDYSQDPSAAGTAGAVKRGMIRSLYLALDLSKAMAEGDFRPNRMAAAAAALIDFIQEYFDQNPLSQLGIVITRDGICQRVSELSGSPQAQVNALKRALHTRGSASLQNTLEMALASLKATPEYASREVVVVYGSLSTCDPGDIHATLERLQKARVRVSVVHLSAEL 239
BLAST of mRNA_L-elsbetiae_contig8036.17024.1 vs. uniprot
Match: A0A433Q0F6_9FUNG (VWFA domain-containing protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433Q0F6_9FUNG) HSP 1 Score: 201 bits (511), Expect = 6.430e-61 Identity = 106/211 (50.24%), Postives = 152/211 (72.04%), Query Frame = 1 Query: 7 DIDDHDDNAGAGYAWEKGFERTWEGVEEDEHGNIK---AREDGQRRSRRVRRRVGGQSIKRGMIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFITNYFDQNPLSQLGILVTREGRADKVTELSGNPKAHMEALT--KDSDTKGEASLQNLLEMACTSLRAVPEYGNREVVVLYSSLSTCDPGDIHETIAKLKTHNVRASVVGLGAEM 624 D+ +D GY WE+ ++R+W+ ++ED G ++ A+ Q + RR+ R +I+RG+IR+L+L IDLS+TM+E D+RPSRL +TL + F+ YFDQNP+SQLGI++TR+G A+K+TELSGNP H+ AL K+ +T GE SLQN LE+A SL +P +G+REVV+++ +L+TCDPG+I+ETI LK NVR SVVGL AE+ Sbjct: 21 DVHGSEDPPQKGYDWEQEYKRSWDVLQEDSEGRLESAVAQLQQQAKRRRLLRDTA--TIQRGIIRHLFLVIDLSETMNEKDLRPSRLDLTLSYAEQFVLEYFDQNPISQLGIILTRDGVAEKLTELSGNPMEHVRALKNKKNQETSGEPSLQNALEVARASLTHIPSHGSREVVIIFGALTTCDPGNIYETIENLKKENVRVSVVGLAAEV 229
BLAST of mRNA_L-elsbetiae_contig8036.17024.1 vs. uniprot
Match: A0A8H7UFT1_9FUNG (General transcription and DNA repair factor IIH n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7UFT1_9FUNG) HSP 1 Score: 206 bits (523), Expect = 9.160e-61 Identity = 106/211 (50.24%), Postives = 154/211 (72.99%), Query Frame = 1 Query: 7 DIDDHDDNAGAGYAWEKGFERTWEGVEEDEHGNIK---AREDGQRRSRRVRRRVGGQSIKRGMIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFITNYFDQNPLSQLGILVTREGRADKVTELSGNPKAHMEALT--KDSDTKGEASLQNLLEMACTSLRAVPEYGNREVVVLYSSLSTCDPGDIHETIAKLKTHNVRASVVGLGAEM 624 D +++DN GY+WE+ ++R+W+ ++ED G + A Q + RR+ R +++RG+IR+L+L IDLS+ M+E D+RPSRL +TL + F+T YFDQNP+SQLGI+V R+G A+++T+LSGNP H+ AL ++ +T GE SLQN L+MAC SL VP +G+REV+V+Y SL+TCDPGDI++TIA+LK +VR S VGL AE+ Sbjct: 21 DTHENEDNQQGGYSWEEEYKRSWDVLQEDAEGRLSSVVAHLQQQMKRRRLLRDTA--TVQRGIIRHLFLVIDLSEAMNEKDLRPSRLELTLTYARQFVTEYFDQNPISQLGIIVIRDGVAERLTDLSGNPTDHLRALKNKRNQETSGEPSLQNALDMACASLVNVPSHGSREVLVVYGSLTTCDPGDIYDTIAQLKKEHVRVSFVGLAAEI 229
BLAST of mRNA_L-elsbetiae_contig8036.17024.1 vs. uniprot
Match: A0A8H7PGK2_MORIS (General transcription and DNA repair factor IIH n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PGK2_MORIS) HSP 1 Score: 204 bits (519), Expect = 3.600e-60 Identity = 105/211 (49.76%), Postives = 152/211 (72.04%), Query Frame = 1 Query: 7 DIDDHDDNAGAGYAWEKGFERTWEGVEEDEHGNIK---AREDGQRRSRRVRRRVGGQSIKRGMIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFITNYFDQNPLSQLGILVTREGRADKVTELSGNPKAHMEALT--KDSDTKGEASLQNLLEMACTSLRAVPEYGNREVVVLYSSLSTCDPGDIHETIAKLKTHNVRASVVGLGAEM 624 D +++D G GY+WE+ ++R+W+ ++ED G + A+ Q + RR+ R +++RG+IR+ +L IDLS+ M+E D+RPSRL +TL + F+ YFDQNP+SQLGI+V R+G A+++T+LSGNP H+ AL ++ +T GE SLQN L+MAC SL VP +G+REV+V+Y SL+TCDPGDI++TIA LK NVR S VGL AE+ Sbjct: 32 DTHENEDAQGGGYSWEEEYKRSWDVLQEDSEGRLSSVVAQLQQQMKRRRLLRDTA--TVQRGIIRHFFLVIDLSEAMNEKDLRPSRLELTLTYAKQFVMEYFDQNPISQLGIIVIRDGIAERLTDLSGNPTDHLRALKNKRNQETSGEPSLQNALDMACASLVNVPSHGSREVLVIYGSLTTCDPGDIYDTIATLKKENVRVSFVGLAAEI 240
BLAST of mRNA_L-elsbetiae_contig8036.17024.1 vs. uniprot
Match: A0A1C7N3N9_9FUNG (General transcription and DNA repair factor IIH n=2 Tax=Mucorineae TaxID=1344963 RepID=A0A1C7N3N9_9FUNG) HSP 1 Score: 198 bits (504), Expect = 1.840e-58 Identity = 99/204 (48.53%), Postives = 150/204 (73.53%), Query Frame = 1 Query: 22 DDNAGAGYAWEKGFERTWEGVEEDEHGNIKAREDGQRRSRRVRRRVGGQSI-KRGMIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFITNYFDQNPLSQLGILVTREGRADKVTELSGNPKAHMEA--LTKDSDTKGEASLQNLLEMACTSLRAVPEYGNREVVVLYSSLSTCDPGDIHETIAKLKTHNVRASVVGLGAEM 624 DD+ GYAWE+ ++R+W+ ++ED G + + ++ R+ RR + +I +RG+IR+L+L IDLS+ M+E D+RPSR+ +TL Q F+ +FDQNP+SQLGI++TR+G A+K+TELSGNP H++A L K+++T GE SLQN L++A S+ VP +G++EV++L+ SL+TCDP DIHET+ LK VR ++VGL AE+ Sbjct: 24 DDHGNGGYAWEEEYKRSWDILQEDAEGRLSSVVSQLQQQRKRRRLLKDTAIIQRGIIRHLFLVIDLSEAMNEKDLRPSRVELTLTYAQQFVVEFFDQNPISQLGIIITRDGIAEKLTELSGNPTDHIKAIKLKKNTETSGEPSLQNALQLARASMLGVPSHGSKEVLLLFGSLTTCDPADIHETVQLLKKEMVRVNIVGLAAEV 227
BLAST of mRNA_L-elsbetiae_contig8036.17024.1 vs. uniprot
Match: A0A1X2HRH6_SYNRA (General transcription and DNA repair factor IIH n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HRH6_SYNRA) HSP 1 Score: 198 bits (503), Expect = 2.290e-58 Identity = 106/216 (49.07%), Postives = 158/216 (73.15%), Query Frame = 1 Query: 7 DIDD-----HDDNAG-AGYAWEKGFERTWEGVEEDEHGNIKAREDGQRRSRRVRRRVGGQS--IKRGMIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFITNYFDQNPLSQLGILVTREGRADKVTELSGNPKAHMEALT--KDSDTKGEASLQNLLEMACTSLRAVPEYGNREVVVLYSSLSTCDPGDIHETIAKLKTHNVRASVVGLGAEM 624 D+DD DD+AG AGY+WE+ ++R+W+ ++EDE G + + Q + +R RRR+ + I+RG+IR+L+L IDLS+ M+E D+RPSR+ +TL + F+ +FDQNP+SQLGI+VTR+G A+K+TELSGNP H AL K +DT GE SLQN L++A +S+ VP +G++E+++++ +L+TCDP DIHETI L+ NVR ++VGL AE+ Sbjct: 12 DVDDTFDGNQDDDAGKAGYSWEEEYKRSWDILQEDEEGRLSS-VVAQLQQQRKRRRLLKDTAVIQRGIIRHLFLVIDLSEAMNERDLRPSRVELTLTYAEQFVYEFFDQNPISQLGIIVTRDGIAEKLTELSGNPNDHARALKAGKKTDTSGEPSLQNALQLARSSMVGVPSHGSKEILMVFGALTTCDPSDIHETIDLLQKENVRVNIVGLAAEV 226
BLAST of mRNA_L-elsbetiae_contig8036.17024.1 vs. uniprot
Match: A0A6G0W889_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W889_9STRA) HSP 1 Score: 197 bits (500), Expect = 2.510e-58 Identity = 99/199 (49.75%), Postives = 140/199 (70.35%), Query Frame = 1 Query: 40 GYAWEKGFERTWEGVEEDEHGNIK----AREDGQRRSRRVRRRVGGQSIKRGMIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFITNYFDQNPLSQLGILVTREGRADKVTELSGNPKAHMEALTKDSDTKGEASLQNLLEMACTSLRAVPEYGNREVVVLYSSLSTCDPGDIHETIAKLKTHNVRASVVGLGAEM 624 GYAWE FER+W+G+EEDE G +K A G + R+RR+ Q +++G+IRY+++ +DLSK MS+ D +P R AV VQ FI +YFDQNP+SQLG++ + +A+K+T+LSGNP HME L + GE SLQN LEMA +L+ VP YG++E++V+Y SL+T DPGDI T++ L+ ++R S VG+GAEM Sbjct: 9 GYAWEGSFERSWDGIEEDESGALKVHSIAASSGDKA--RLRRQQMLQRVRKGLIRYVFVIVDLSKGMSQKDWKPHRCAVVTEEVQRFIADYFDQNPISQLGLIGIKSAKAEKLTDLSGNPSQHMEVLKRALTVHGEPSLQNALEMARNALKIVPSYGSKEIIVVYGSLTTTDPGDIFATLSSLQRESIRCSFVGMGAEM 205
BLAST of mRNA_L-elsbetiae_contig8036.17024.1 vs. uniprot
Match: A0A0L0HAK2_SPIPD (General transcription and DNA repair factor IIH n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0HAK2_SPIPD) HSP 1 Score: 198 bits (503), Expect = 4.090e-58 Identity = 106/215 (49.30%), Postives = 157/215 (73.02%), Query Frame = 1 Query: 1 MDDIDDHD--DNAGAGYAWEKGFERTWEGVEEDEHGNIK---AREDGQRRSRRVRRRVGGQSIKRGMIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFITNYFDQNPLSQLGILVTREGRADKVTELSGNPKAHMEALTKDS--DTKGEASLQNLLEMACTSLRAVPEYGNREVVVLYSSLSTCDPGDIHETIAKLKTHNVRASVVGLGAEM 624 +DD + HD +G GY+WE+ ++R+W+ ++EDE G+++ A Q + RR+ R +++RG+IR+LYL IDLS+ M+E D++PSR+ T+R+ ++FI YFDQNPLSQLGI++TR+G A+++TEL+GNP H AL K S + KGE SLQN LE+A TSL VP +G+RE++VLY+SL+TCDP +I +T+ LK +R S+VGL AE+ Sbjct: 22 IDDDEGHDLMGASGQGYSWEEEYKRSWDILQEDEQGSLQGVVASIQQQLKRRRLHRDTA--TVQRGIIRHLYLVIDLSRAMAELDLKPSRIECTMRLAEEFIGEYFDQNPLSQLGIIITRDGLAEQLTELTGNPTDHTSALQKRSNREPKGEPSLQNALELARTSLAHVPSHGSREILVLYASLTTCDPDNILDTLESLKRECIRVSMVGLSAEV 234 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8036.17024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8036.17024.1 >prot_L-elsbetiae_contig8036.17024.1 ID=prot_L-elsbetiae_contig8036.17024.1|Name=mRNA_L-elsbetiae_contig8036.17024.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=215bp MDDIDDHDDNAGAGYAWEKGFERTWEGVEEDEHGNIKAREDGQRRSRRVRback to top mRNA from alignment at L-elsbetiae_contig8036:5529..8987+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig8036.17024.1 ID=mRNA_L-elsbetiae_contig8036.17024.1|Name=mRNA_L-elsbetiae_contig8036.17024.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3459bp|location=Sequence derived from alignment at L-elsbetiae_contig8036:5529..8987+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig8036:5529..8987+ >mRNA_L-elsbetiae_contig8036.17024.1 ID=mRNA_L-elsbetiae_contig8036.17024.1|Name=mRNA_L-elsbetiae_contig8036.17024.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1290bp|location=Sequence derived from alignment at L-elsbetiae_contig8036:5529..8987+ (Laminarionema elsbetiae ELsaHSoW15)back to top |