mRNA_L-elsbetiae_contig797.16938.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig797.16938.1
Unique NamemRNA_L-elsbetiae_contig797.16938.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig797.16938.1 vs. uniprot
Match: D8LKQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ3_ECTSI)

HSP 1 Score: 203 bits (516), Expect = 8.580e-57
Identity = 276/433 (63.74%), Postives = 301/433 (69.52%), Query Frame = 1 
Query:    1 LCGELLSRESSSGRGSGTSTPRLSSSVSASRGSPRGSAGSVEDFSS-STTGMSDMHMAGGGVDRPVLSRARSSXXXXXXXXXXXXXXXXXXXXXXXXXX-------GVLGN-SGD---NGGAENQTELPACLVGILDSFFGG---SAGMANNGXXXXXXXXXXXXXXXXXXXXXXXAAP--RSPSTITGIEVSVGRSAFAQLGVHGLDDIKHLSGAGIIAPESVD--------------AVHSSAARGAAPADGFSLAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSSPSACEGYSKKVGAGGV---GAATTPAAIAAAAEGISLLGL--SGKIGGDAGGVPSSLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVVPNPLKTVRITGTAEEVQLAEYLIRVRT-GRNISAA 1188
            +CGELLSRESS GRGSGTSTP LSSSVS SR SPRGSAGSVEDF + +T G +DM+  GGG+DRP+L+R RS XXXXXXXXXXXXXXXXXXXXXXXXXX       G+LGN SG+   NGG  +  ELP+CLVGILDSF GG   S     N        XXXXXXXXXXXXXXXXAAP  RSPSTITGIE+ VGRSAFA+LG  GLDDIK LSGAGI APES +              AV+SSAARG AP DG  LAA+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +S S  EG+  + G  G    GAATTP AIAA   G+S L L  +        GV  SLA           XXXXXXXX             T  PN LKTV+ITGTAEEVQLAEYLIRV T G N++AA
Sbjct:    1 MCGELLSRESSGGRGSGTSTPLLSSSVSVSRDSPRGSAGSVEDFGAPATIGAADMN-GGGGMDRPLLTRGRSXXXXXXXXXXXXXXXXXXXXXXXXXXXAGALHRGGMLGNMSGNGTGNGGVSDDGELPSCLVGILDSFLGGGGKSYVSDGNSIRSGSGGXXXXXXXXXXXXXXXXAAPPLRSPSTITGIEMEVGRSAFARLGERGLDDIKDLSGAGISAPESPEGYYHLSDEAAAAMGAVYSSAARGNAPCDGVGLAAANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTS-SPFEGFRLREGVRGNMSDGAATTPGAIAAVTGGVSRLVLDTTNSXXXXXNGVSPSLASAVGHVSGGLAXXXXXXXX-------------TAGPNSLKTVKITGTAEEVQLAEYLIRVSTTGGNMAAA 418
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BLAST of mRNA_L-elsbetiae_contig797.16938.1 vs. uniprot
Match: A0A6H5L8U0_9PHAE (KH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8U0_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 3.260e-48
Identity = 260/454 (57.27%), Postives = 283/454 (62.33%), Query Frame = 1 
Query:    1 LCGELLSRESSSGRGSGTSTPRLSSSVSASRGSPRGSAGSVEDFSS-STTGMSDMHMAGGGVDRPVLSRARSSXXXXXXXXXXXXXXXXXXXXXXXXXX-------GVLGNSGDN----GGAENQTELPACLVGILDSFFGGS------------AGMANNGXXXXXXXXXXXXXXXXXXXXXXXAAP--RSPSTITGIEVSVGRSAFAQLGVHGLDDIKHLSGAGIIAPESVD--------------AVHSSAARGAAPADGFSLAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL-----------SSPSACEGYSKKVGAGGV---GAATTPAAIAAAAEGISLLGLSGKIGGDAGG---VPSSLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVVPNPLKTVRITGTAEEVQLAEYLIRVRT-GRNISAA 1188
            +CGELLSRESS GR SGTSTP LSSSVS S+ SPRGSAGSVEDF + +T G +DM+  GGG+DR +L+R R  XXXXXXXXXXXXXXXXXXXXXXXXXX       G+LGN   N    GG  +  ELP+CLVGILDSF GG             +G  N G                       AAP  RSPSTITGIE+ VGRSAFA+LG  GLDDIK LSGAGI APES +              AV+SSAARG AP DG  LAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            SSP   EG+  K G  G    GAATTP AIAA   G+S LGL   +         V  SLA          XXXXXXXXX             T  PN LKTV+ITGTAEEVQLAEYLIRVRT G N++AA
Sbjct:  396 MCGELLSRESSGGRVSGTSTPLLSSSVSVSKDSPRGSAGSVEDFGTPATIGAADMN-GGGGMDRQLLTRGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVLHRGGMLGNMSGNXXXXGGVSDDGELPSCLVGILDSFLGGGGKSYVSDGNGIRSGSGNXGSVGNSNANEKNGNNNG-------AAPPLRSPSTITGIEMEVGRSAFARLGERGLDDIKDLSGAGISAPESPEGYCHLSDEALAAMGAVYSSAARGNAPCDGVGLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSPF--EGFGLKEGVRGNMGGGAATTPGAIAAVTGGVSRLGLGTTMSXXXXXXXXVSPSLASAVGQVSGGLXXXXXXXXX-------------TAGPNSLKTVKITGTAEEVQLAEYLIRVRTTGGNMAAA 826
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig797.16938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKQ3_ECTSI8.580e-5763.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L8U0_9PHAE3.260e-4857.27KH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig797contigL-elsbetiae_contig797:18418..20164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_004400.1
Exons2
Model size1415
Cds size1041
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig797.16938.1prot_L-elsbetiae_contig797.16938.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig797 18974..20014 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816881.0792181-UTR-L-elsbetiae_contig797:18417..186031622816881.0792181-UTR-L-elsbetiae_contig797:18417..18603Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig797 18418..18603 -
1691683883.5546315-UTR-L-elsbetiae_contig797:18417..186031691683883.5546315-UTR-L-elsbetiae_contig797:18417..18603Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig797 18418..18603 -
1622816881.092933-UTR-L-elsbetiae_contig797:18935..189731622816881.092933-UTR-L-elsbetiae_contig797:18935..18973Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig797 18936..18973 -
1691683883.5699484-UTR-L-elsbetiae_contig797:18935..189731691683883.5699484-UTR-L-elsbetiae_contig797:18935..18973Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig797 18936..18973 -
1622816881.1190379-UTR-L-elsbetiae_contig797:20014..201641622816881.1190379-UTR-L-elsbetiae_contig797:20014..20164Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig797 20015..20164 -
1691683883.596225-UTR-L-elsbetiae_contig797:20014..201641691683883.596225-UTR-L-elsbetiae_contig797:20014..20164Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig797 20015..20164 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816881.1068347-CDS-L-elsbetiae_contig797:18973..200141622816881.1068347-CDS-L-elsbetiae_contig797:18973..20014Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig797 18974..20014 -
1691683883.5830073-CDS-L-elsbetiae_contig797:18973..200141691683883.5830073-CDS-L-elsbetiae_contig797:18973..20014Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig797 18974..20014 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig797.16938.1

>prot_L-elsbetiae_contig797.16938.1 ID=prot_L-elsbetiae_contig797.16938.1|Name=mRNA_L-elsbetiae_contig797.16938.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=347bp
MSDMHMAGGGVDRPVLSRARSSSSSGTGGGGAAVAVLDSGGGGVLHHGGV
LGNSGDNGGAENQTELPACLVGILDSFFGGSAGMANNGNGNGSNSGSSSN
NDDDNNNNNNAAAPRSPSTITGIEVSVGRSAFAQLGVHGLDDIKHLSGAG
IIAPESVDAVHSSAARGAAPADGFSLAASAASAATAAAAATSSASSVPKR
ALSSVQGGGAGGMSSGSSSSSLSSPSACEGYSKKVGAGGVGAATTPAAIA
AAAEGISLLGLSGKIGGDAGGVPSSLAAAAAAAAAARNAGGGGLALGGLG
GGGGGGGGGTVVPNPLKTVRITGTAEEVQLAEYLIRVRTGRNISAA*
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mRNA from alignment at L-elsbetiae_contig797:18418..20164-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig797.16938.1 ID=mRNA_L-elsbetiae_contig797.16938.1|Name=mRNA_L-elsbetiae_contig797.16938.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1747bp|location=Sequence derived from alignment at L-elsbetiae_contig797:18418..20164- (Laminarionema elsbetiae ELsaHSoW15)
TTGTGCGGCGAGCTGCTGTCGCGCGAGAGTTCGTCGGGGCGTGGAAGCGG
CACTAGCACCCCCCGTCTATCATCGTCTGTGTCTGCGTCCAGGGGGTCGC
CCCGCGGTAGCGCCGGGTCTGTTGAAGACTTCAGCAGCTCGACGACGGGC
ATGTCTGACATGCACATGGCCGGCGGGGGCGTGGATCGCCCGGTCCTCAG
TCGAGCGCGGTCTTCTTCGTCCTCCGGCACCGGCGGTGGTGGCGCGGCGG
TCGCCGTGCTGGACTCTGGCGGCGGCGGCGTCCTCCACCACGGCGGCGTT
CTGGGCAACAGCGGCGACAACGGTGGGGCTGAGAACCAAACAGAGCTGCC
CGCATGCCTCGTCGGGATCTTGGACTCTTTCTTCGGAGGAAGCGCGGGTA
TGGCCAACAACGGGAACGGCAACGGCAGCAACAGCGGCAGCAGCAGTAAC
AACGACGACGACAACAACAACAACAACAATGCCGCAGCCCCGCGCAGCCC
TTCGACCATCACGGGCATCGAGGTGTCGGTAGGTCGGTCGGCGTTCGCCC
AGCTCGGCGTCCACGGCCTCGACGACATCAAGCACCTCTCCGGCGCGGGG
ATCATCGCACCCGAGTCAGTGGATGCGGTGCACAGCTCCGCGGCCCGGGG
AGCCGCTCCGGCCGACGGGTTCAGCCTCGCGGCTAGCGCTGCTAGCGCGG
CCACCGCCGCAGCGGCGGCCACGTCGTCCGCGTCGTCGGTCCCGAAAAGG
GCGCTCTCCTCGGTTCAAGGAGGTGGAGCCGGGGGGATGTCCTCCGGTTC
GTCTTCCTCGTCGCTGTCGTCTCCTTCTGCGTGCGAGGGGTACAGCAAGA
AGGTCGGGGCGGGAGGCGTCGGTGCCGCAACCACACCTGCCGCTATCGCG
GCGGCGGCTGAGGGCATCTCTCTGCTGGGGCTGAGTGGCAAGATCGGCGG
CGACGCCGGCGGTGTCCCTTCCTCCCTTGCCGCCGCAGCCGCCGCCGCAG
CTGCCGCCCGAAACGCCGGGGGCGGCGGGCTGGCGTTAGGGGGTCTCGGC
GGCGGCGGTGGCGGCGGCGGCGGCGGGACCGTCGTGCCTAACCCTCTCAA
GACCGTCAGGATCACGGGGACAGCCGAAGAGGTGCAGCTCGCGGAGTATC
TGATCCGCGTGAGGACCGGGCGCAACATTTCGGCAGCTTGATGCCTGCAA
GAACAGGAGGAATCCCAGCAGGCGTCGAGGTGAGGAAGCGAGCGGAGGCA
GCGTTGGGTTGGGTTAGTAGGGGCATAAATGCTTCTGGAAGTAGGTTTGA
CACATGTCTCAAGAAGGCTGGATTTAGACCGCTGGCATTCATGTAGCACC
AAAAAACGACAAAAAAAAAGGTAACGCCCCCGCCCCGAGCGTCTTGTGTG
TCTTGGTAGATAGGCGCCATCTCGCCATGAGGTGATCGAACGTCTCCAGT
GTTGAAAATGCACGCATAGATACACATGTCGCCACACCCTTCCTTGGCTT
TACAGGCGCATTCCTTCCCCCCGCCCTACCGCCAAAAAACGCCTTCTTCT
CTCTCCCTCAGGCTTGGCACATTTTCCAGAGGGTCGAGCGAAGGCGTTCA
GGCCTCAACCGCCTGCCCATGTTTCAATGCATCACCGGCCGTCTCGTTGA
TTACGTCGGCAACGGTGGCGGTGGAATCCAAGGCGCCCGCGGCATGCTGA
CCACGTCGCAAGACACAAACTCCGGATTTCCCGGTAGAGTTCACCCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig797:18418..20164-

>mRNA_L-elsbetiae_contig797.16938.1 ID=mRNA_L-elsbetiae_contig797.16938.1|Name=mRNA_L-elsbetiae_contig797.16938.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2082bp|location=Sequence derived from alignment at L-elsbetiae_contig797:18418..20164- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTGACATGCACATGGCCGGCGGGGGCGTGGATCGCCCGGTCCTCAG
TCGAGCGCGGTCTTCTTCGTCCTCCGGCACCGGCGGTGGTGGCGCGGCGG
TCGCCGTGCTGGACTCTGGCGGCGGCGGCGTCCTCCACCACGGCGGCGTT
CTGGGCAACAGCGGCGACAACGGTGGGGCTGAGAACCAAACAGAGCTGCC
CGCATGCCTCGTCGGGATCTTGGACTCTTTCTTCGGAGGAAGCGCGGGTA
TGGCCAACAACGGGAACGGCAACGGCAGCAACAGCGGCAGCAGCAGTAAC
AACGACGACGACAACAACAACAACAACAATGCCGCAGCCCCGCGCAGCCC
TTCGACCATCACGGGCATCGAGGTGTCGGTAGGTCGGTCGGCGTTCGCCC
AGCTCGGCGTCCACGGCCTCGACGACATCAAGCACCTCTCCGGCGCGGGG
ATCATCGCACCCGAGTCAGTGGATGCGGTGCACAGCTCCGCGGCCCGGGG
AGCCGCTCCGGCCGACGGGTTCAGCCTCGCGGCTAGCGCTGCTAGCGCGG
CCACCGCCGCAGCGGCGGCCACGTCGTCCGCGTCGTCGGTCCCGAAAAGG
GCGCTCTCCTCGGTTCAAGGAGGTGGAGCCGGGGGGATGTCCTCCGGTTC
GTCTTCCTCGTCGCTGTCGTCTCCTTCTGCGTGCGAGGGGTACAGCAAGA
AGGTCGGGGCGGGAGGCGTCGGTGCCGCAACCACACCTGCCGCTATCGCG
GCGGCGGCTGAGGGCATCTCTCTGCTGGGGCTGAGTGGCAAGATCGGCGG
CGACGCCGGCGGTGTCCCTTCCTCCCTTGCCGCCGCAGCCGCCGCCGCAG
CTGCCGCCCGAAACGCCGGGGGCGGCGGGCTGGCGTTAGGGGGTCTCGGC
GGCGGCGGTGGCGGCGGCGGCGGCGGGACCGTCGTGCCTAACCCTCTCAA
GACCGTCAGGATCACGGGGACAGCCGAAGAGGTGCAGCTCGCGGAGTATC
TGATCCGCGTGAGGACCGGGCGCAACATTTCGGCAGCTTGAATGTCTGAC
ATGCACATGGCCGGCGGGGGCGTGGATCGCCCGGTCCTCAGTCGAGCGCG
GTCTTCTTCGTCCTCCGGCACCGGCGGTGGTGGCGCGGCGGTCGCCGTGC
TGGACTCTGGCGGCGGCGGCGTCCTCCACCACGGCGGCGTTCTGGGCAAC
AGCGGCGACAACGGTGGGGCTGAGAACCAAACAGAGCTGCCCGCATGCCT
CGTCGGGATCTTGGACTCTTTCTTCGGAGGAAGCGCGGGTATGGCCAACA
ACGGGAACGGCAACGGCAGCAACAGCGGCAGCAGCAGTAACAACGACGAC
GACAACAACAACAACAACAATGCCGCAGCCCCGCGCAGCCCTTCGACCAT
CACGGGCATCGAGGTGTCGGTAGGTCGGTCGGCGTTCGCCCAGCTCGGCG
TCCACGGCCTCGACGACATCAAGCACCTCTCCGGCGCGGGGATCATCGCA
CCCGAGTCAGTGGATGCGGTGCACAGCTCCGCGGCCCGGGGAGCCGCTCC
GGCCGACGGGTTCAGCCTCGCGGCTAGCGCTGCTAGCGCGGCCACCGCCG
CAGCGGCGGCCACGTCGTCCGCGTCGTCGGTCCCGAAAAGGGCGCTCTCC
TCGGTTCAAGGAGGTGGAGCCGGGGGGATGTCCTCCGGTTCGTCTTCCTC
GTCGCTGTCGTCTCCTTCTGCGTGCGAGGGGTACAGCAAGAAGGTCGGGG
CGGGAGGCGTCGGTGCCGCAACCACACCTGCCGCTATCGCGGCGGCGGCT
GAGGGCATCTCTCTGCTGGGGCTGAGTGGCAAGATCGGCGGCGACGCCGG
CGGTGTCCCTTCCTCCCTTGCCGCCGCAGCCGCCGCCGCAGCTGCCGCCC
GAAACGCCGGGGGCGGCGGGCTGGCGTTAGGGGGTCTCGGCGGCGGCGGT
GGCGGCGGCGGCGGCGGGACCGTCGTGCCTAACCCTCTCAAGACCGTCAG
GATCACGGGGACAGCCGAAGAGGTGCAGCTCGCGGAGTATCTGATCCGCG
TGAGGACCGGGCGCAACATTTCGGCAGCTTGA
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