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Homology
BLAST of mRNA_L-elsbetiae_contig797.16938.1 vs. uniprot
Match: D8LKQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ3_ECTSI) HSP 1 Score: 203 bits (516), Expect = 8.580e-57 Identity = 276/433 (63.74%), Postives = 301/433 (69.52%), Query Frame = 1
Query: 1 LCGELLSRESSSGRGSGTSTPRLSSSVSASRGSPRGSAGSVEDFSS-STTGMSDMHMAGGGVDRPVLSRARSSXXXXXXXXXXXXXXXXXXXXXXXXXX-------GVLGN-SGD---NGGAENQTELPACLVGILDSFFGG---SAGMANNGXXXXXXXXXXXXXXXXXXXXXXXAAP--RSPSTITGIEVSVGRSAFAQLGVHGLDDIKHLSGAGIIAPESVD--------------AVHSSAARGAAPADGFSLAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSSPSACEGYSKKVGAGGV---GAATTPAAIAAAAEGISLLGL--SGKIGGDAGGVPSSLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVVPNPLKTVRITGTAEEVQLAEYLIRVRT-GRNISAA 1188
+CGELLSRESS GRGSGTSTP LSSSVS SR SPRGSAGSVEDF + +T G +DM+ GGG+DRP+L+R RS XXXXXXXXXXXXXXXXXXXXXXXXXX G+LGN SG+ NGG + ELP+CLVGILDSF GG S N XXXXXXXXXXXXXXXXAAP RSPSTITGIE+ VGRSAFA+LG GLDDIK LSGAGI APES + AV+SSAARG AP DG LAA+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +S S EG+ + G G GAATTP AIAA G+S L L + GV SLA XXXXXXXX T PN LKTV+ITGTAEEVQLAEYLIRV T G N++AA
Sbjct: 1 MCGELLSRESSGGRGSGTSTPLLSSSVSVSRDSPRGSAGSVEDFGAPATIGAADMN-GGGGMDRPLLTRGRSXXXXXXXXXXXXXXXXXXXXXXXXXXXAGALHRGGMLGNMSGNGTGNGGVSDDGELPSCLVGILDSFLGGGGKSYVSDGNSIRSGSGGXXXXXXXXXXXXXXXXAAPPLRSPSTITGIEMEVGRSAFARLGERGLDDIKDLSGAGISAPESPEGYYHLSDEAAAAMGAVYSSAARGNAPCDGVGLAAANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTS-SPFEGFRLREGVRGNMSDGAATTPGAIAAVTGGVSRLVLDTTNSXXXXXNGVSPSLASAVGHVSGGLAXXXXXXXX-------------TAGPNSLKTVKITGTAEEVQLAEYLIRVSTTGGNMAAA 418
BLAST of mRNA_L-elsbetiae_contig797.16938.1 vs. uniprot
Match: A0A6H5L8U0_9PHAE (KH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8U0_9PHAE) HSP 1 Score: 187 bits (475), Expect = 3.260e-48 Identity = 260/454 (57.27%), Postives = 283/454 (62.33%), Query Frame = 1
Query: 1 LCGELLSRESSSGRGSGTSTPRLSSSVSASRGSPRGSAGSVEDFSS-STTGMSDMHMAGGGVDRPVLSRARSSXXXXXXXXXXXXXXXXXXXXXXXXXX-------GVLGNSGDN----GGAENQTELPACLVGILDSFFGGS------------AGMANNGXXXXXXXXXXXXXXXXXXXXXXXAAP--RSPSTITGIEVSVGRSAFAQLGVHGLDDIKHLSGAGIIAPESVD--------------AVHSSAARGAAPADGFSLAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL-----------SSPSACEGYSKKVGAGGV---GAATTPAAIAAAAEGISLLGLSGKIGGDAGG---VPSSLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVVPNPLKTVRITGTAEEVQLAEYLIRVRT-GRNISAA 1188
+CGELLSRESS GR SGTSTP LSSSVS S+ SPRGSAGSVEDF + +T G +DM+ GGG+DR +L+R R XXXXXXXXXXXXXXXXXXXXXXXXXX G+LGN N GG + ELP+CLVGILDSF GG +G N G AAP RSPSTITGIE+ VGRSAFA+LG GLDDIK LSGAGI APES + AV+SSAARG AP DG LAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SSP EG+ K G G GAATTP AIAA G+S LGL + V SLA XXXXXXXXX T PN LKTV+ITGTAEEVQLAEYLIRVRT G N++AA
Sbjct: 396 MCGELLSRESSGGRVSGTSTPLLSSSVSVSKDSPRGSAGSVEDFGTPATIGAADMN-GGGGMDRQLLTRGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVLHRGGMLGNMSGNXXXXGGVSDDGELPSCLVGILDSFLGGGGKSYVSDGNGIRSGSGNXGSVGNSNANEKNGNNNG-------AAPPLRSPSTITGIEMEVGRSAFARLGERGLDDIKDLSGAGISAPESPEGYCHLSDEALAAMGAVYSSAARGNAPCDGVGLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSPF--EGFGLKEGVRGNMGGGAATTPGAIAAVTGGVSRLGLGTTMSXXXXXXXXVSPSLASAVGQVSGGLXXXXXXXXX-------------TAGPNSLKTVKITGTAEEVQLAEYLIRVRTTGGNMAAA 826
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | hypothetical protein |
Ec32 ortholog | Ec-07_004400.1 |
Exons | 2 |
Model size | 1415 |
Cds size | 1041 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816881.0792181-UTR-L-elsbetiae_contig797:18417..18603 | 1622816881.0792181-UTR-L-elsbetiae_contig797:18417..18603 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig797 18418..18603 - |
1691683883.5546315-UTR-L-elsbetiae_contig797:18417..18603 | 1691683883.5546315-UTR-L-elsbetiae_contig797:18417..18603 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig797 18418..18603 - |
1622816881.092933-UTR-L-elsbetiae_contig797:18935..18973 | 1622816881.092933-UTR-L-elsbetiae_contig797:18935..18973 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig797 18936..18973 - |
1691683883.5699484-UTR-L-elsbetiae_contig797:18935..18973 | 1691683883.5699484-UTR-L-elsbetiae_contig797:18935..18973 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig797 18936..18973 - |
1622816881.1190379-UTR-L-elsbetiae_contig797:20014..20164 | 1622816881.1190379-UTR-L-elsbetiae_contig797:20014..20164 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig797 20015..20164 - |
1691683883.596225-UTR-L-elsbetiae_contig797:20014..20164 | 1691683883.596225-UTR-L-elsbetiae_contig797:20014..20164 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig797 20015..20164 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816881.1068347-CDS-L-elsbetiae_contig797:18973..20014 | 1622816881.1068347-CDS-L-elsbetiae_contig797:18973..20014 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig797 18974..20014 - |
1691683883.5830073-CDS-L-elsbetiae_contig797:18973..20014 | 1691683883.5830073-CDS-L-elsbetiae_contig797:18973..20014 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig797 18974..20014 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig797.16938.1 >prot_L-elsbetiae_contig797.16938.1 ID=prot_L-elsbetiae_contig797.16938.1|Name=mRNA_L-elsbetiae_contig797.16938.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=347bp
MSDMHMAGGGVDRPVLSRARSSSSSGTGGGGAAVAVLDSGGGGVLHHGGV LGNSGDNGGAENQTELPACLVGILDSFFGGSAGMANNGNGNGSNSGSSSN NDDDNNNNNNAAAPRSPSTITGIEVSVGRSAFAQLGVHGLDDIKHLSGAG IIAPESVDAVHSSAARGAAPADGFSLAASAASAATAAAAATSSASSVPKR ALSSVQGGGAGGMSSGSSSSSLSSPSACEGYSKKVGAGGVGAATTPAAIA AAAEGISLLGLSGKIGGDAGGVPSSLAAAAAAAAAARNAGGGGLALGGLG GGGGGGGGGTVVPNPLKTVRITGTAEEVQLAEYLIRVRTGRNISAA* back to topmRNA from alignment at L-elsbetiae_contig797:18418..20164- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig797.16938.1 ID=mRNA_L-elsbetiae_contig797.16938.1|Name=mRNA_L-elsbetiae_contig797.16938.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1747bp|location=Sequence derived from alignment at L-elsbetiae_contig797:18418..20164- (Laminarionema elsbetiae ELsaHSoW15) TTGTGCGGCGAGCTGCTGTCGCGCGAGAGTTCGTCGGGGCGTGGAAGCGG
CACTAGCACCCCCCGTCTATCATCGTCTGTGTCTGCGTCCAGGGGGTCGC
CCCGCGGTAGCGCCGGGTCTGTTGAAGACTTCAGCAGCTCGACGACGGGC
ATGTCTGACATGCACATGGCCGGCGGGGGCGTGGATCGCCCGGTCCTCAG
TCGAGCGCGGTCTTCTTCGTCCTCCGGCACCGGCGGTGGTGGCGCGGCGG
TCGCCGTGCTGGACTCTGGCGGCGGCGGCGTCCTCCACCACGGCGGCGTT
CTGGGCAACAGCGGCGACAACGGTGGGGCTGAGAACCAAACAGAGCTGCC
CGCATGCCTCGTCGGGATCTTGGACTCTTTCTTCGGAGGAAGCGCGGGTA
TGGCCAACAACGGGAACGGCAACGGCAGCAACAGCGGCAGCAGCAGTAAC
AACGACGACGACAACAACAACAACAACAATGCCGCAGCCCCGCGCAGCCC
TTCGACCATCACGGGCATCGAGGTGTCGGTAGGTCGGTCGGCGTTCGCCC
AGCTCGGCGTCCACGGCCTCGACGACATCAAGCACCTCTCCGGCGCGGGG
ATCATCGCACCCGAGTCAGTGGATGCGGTGCACAGCTCCGCGGCCCGGGG
AGCCGCTCCGGCCGACGGGTTCAGCCTCGCGGCTAGCGCTGCTAGCGCGG
CCACCGCCGCAGCGGCGGCCACGTCGTCCGCGTCGTCGGTCCCGAAAAGG
GCGCTCTCCTCGGTTCAAGGAGGTGGAGCCGGGGGGATGTCCTCCGGTTC
GTCTTCCTCGTCGCTGTCGTCTCCTTCTGCGTGCGAGGGGTACAGCAAGA
AGGTCGGGGCGGGAGGCGTCGGTGCCGCAACCACACCTGCCGCTATCGCG
GCGGCGGCTGAGGGCATCTCTCTGCTGGGGCTGAGTGGCAAGATCGGCGG
CGACGCCGGCGGTGTCCCTTCCTCCCTTGCCGCCGCAGCCGCCGCCGCAG
CTGCCGCCCGAAACGCCGGGGGCGGCGGGCTGGCGTTAGGGGGTCTCGGC
GGCGGCGGTGGCGGCGGCGGCGGCGGGACCGTCGTGCCTAACCCTCTCAA
GACCGTCAGGATCACGGGGACAGCCGAAGAGGTGCAGCTCGCGGAGTATC
TGATCCGCGTGAGGACCGGGCGCAACATTTCGGCAGCTTGATGCCTGCAA
GAACAGGAGGAATCCCAGCAGGCGTCGAGGTGAGGAAGCGAGCGGAGGCA
GCGTTGGGTTGGGTTAGTAGGGGCATAAATGCTTCTGGAAGTAGGTTTGA
CACATGTCTCAAGAAGGCTGGATTTAGACCGCTGGCATTCATGTAGCACC
AAAAAACGACAAAAAAAAAGGTAACGCCCCCGCCCCGAGCGTCTTGTGTG
TCTTGGTAGATAGGCGCCATCTCGCCATGAGGTGATCGAACGTCTCCAGT
GTTGAAAATGCACGCATAGATACACATGTCGCCACACCCTTCCTTGGCTT
TACAGGCGCATTCCTTCCCCCCGCCCTACCGCCAAAAAACGCCTTCTTCT
CTCTCCCTCAGGCTTGGCACATTTTCCAGAGGGTCGAGCGAAGGCGTTCA
GGCCTCAACCGCCTGCCCATGTTTCAATGCATCACCGGCCGTCTCGTTGA
TTACGTCGGCAACGGTGGCGGTGGAATCCAAGGCGCCCGCGGCATGCTGA
CCACGTCGCAAGACACAAACTCCGGATTTCCCGGTAGAGTTCACCCA back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig797:18418..20164- >mRNA_L-elsbetiae_contig797.16938.1 ID=mRNA_L-elsbetiae_contig797.16938.1|Name=mRNA_L-elsbetiae_contig797.16938.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2082bp|location=Sequence derived from alignment at L-elsbetiae_contig797:18418..20164- (Laminarionema elsbetiae ELsaHSoW15) ATGTCTGACATGCACATGGCCGGCGGGGGCGTGGATCGCCCGGTCCTCAG TCGAGCGCGGTCTTCTTCGTCCTCCGGCACCGGCGGTGGTGGCGCGGCGG TCGCCGTGCTGGACTCTGGCGGCGGCGGCGTCCTCCACCACGGCGGCGTT CTGGGCAACAGCGGCGACAACGGTGGGGCTGAGAACCAAACAGAGCTGCC CGCATGCCTCGTCGGGATCTTGGACTCTTTCTTCGGAGGAAGCGCGGGTA TGGCCAACAACGGGAACGGCAACGGCAGCAACAGCGGCAGCAGCAGTAAC AACGACGACGACAACAACAACAACAACAATGCCGCAGCCCCGCGCAGCCC TTCGACCATCACGGGCATCGAGGTGTCGGTAGGTCGGTCGGCGTTCGCCC AGCTCGGCGTCCACGGCCTCGACGACATCAAGCACCTCTCCGGCGCGGGG ATCATCGCACCCGAGTCAGTGGATGCGGTGCACAGCTCCGCGGCCCGGGG AGCCGCTCCGGCCGACGGGTTCAGCCTCGCGGCTAGCGCTGCTAGCGCGG CCACCGCCGCAGCGGCGGCCACGTCGTCCGCGTCGTCGGTCCCGAAAAGG GCGCTCTCCTCGGTTCAAGGAGGTGGAGCCGGGGGGATGTCCTCCGGTTC GTCTTCCTCGTCGCTGTCGTCTCCTTCTGCGTGCGAGGGGTACAGCAAGA AGGTCGGGGCGGGAGGCGTCGGTGCCGCAACCACACCTGCCGCTATCGCG GCGGCGGCTGAGGGCATCTCTCTGCTGGGGCTGAGTGGCAAGATCGGCGG CGACGCCGGCGGTGTCCCTTCCTCCCTTGCCGCCGCAGCCGCCGCCGCAG CTGCCGCCCGAAACGCCGGGGGCGGCGGGCTGGCGTTAGGGGGTCTCGGC GGCGGCGGTGGCGGCGGCGGCGGCGGGACCGTCGTGCCTAACCCTCTCAA GACCGTCAGGATCACGGGGACAGCCGAAGAGGTGCAGCTCGCGGAGTATC TGATCCGCGTGAGGACCGGGCGCAACATTTCGGCAGCTTGAATGTCTGAC ATGCACATGGCCGGCGGGGGCGTGGATCGCCCGGTCCTCAGTCGAGCGCG GTCTTCTTCGTCCTCCGGCACCGGCGGTGGTGGCGCGGCGGTCGCCGTGC TGGACTCTGGCGGCGGCGGCGTCCTCCACCACGGCGGCGTTCTGGGCAAC AGCGGCGACAACGGTGGGGCTGAGAACCAAACAGAGCTGCCCGCATGCCT CGTCGGGATCTTGGACTCTTTCTTCGGAGGAAGCGCGGGTATGGCCAACA ACGGGAACGGCAACGGCAGCAACAGCGGCAGCAGCAGTAACAACGACGAC GACAACAACAACAACAACAATGCCGCAGCCCCGCGCAGCCCTTCGACCAT CACGGGCATCGAGGTGTCGGTAGGTCGGTCGGCGTTCGCCCAGCTCGGCG TCCACGGCCTCGACGACATCAAGCACCTCTCCGGCGCGGGGATCATCGCA CCCGAGTCAGTGGATGCGGTGCACAGCTCCGCGGCCCGGGGAGCCGCTCC GGCCGACGGGTTCAGCCTCGCGGCTAGCGCTGCTAGCGCGGCCACCGCCG CAGCGGCGGCCACGTCGTCCGCGTCGTCGGTCCCGAAAAGGGCGCTCTCC TCGGTTCAAGGAGGTGGAGCCGGGGGGATGTCCTCCGGTTCGTCTTCCTC GTCGCTGTCGTCTCCTTCTGCGTGCGAGGGGTACAGCAAGAAGGTCGGGG CGGGAGGCGTCGGTGCCGCAACCACACCTGCCGCTATCGCGGCGGCGGCT GAGGGCATCTCTCTGCTGGGGCTGAGTGGCAAGATCGGCGGCGACGCCGG CGGTGTCCCTTCCTCCCTTGCCGCCGCAGCCGCCGCCGCAGCTGCCGCCC GAAACGCCGGGGGCGGCGGGCTGGCGTTAGGGGGTCTCGGCGGCGGCGGT GGCGGCGGCGGCGGCGGGACCGTCGTGCCTAACCCTCTCAAGACCGTCAG GATCACGGGGACAGCCGAAGAGGTGCAGCTCGCGGAGTATCTGATCCGCG TGAGGACCGGGCGCAACATTTCGGCAGCTTGA back to top
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