mRNA_L-elsbetiae_contig5354.13537.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5354.13537.1
Unique NamemRNA_L-elsbetiae_contig5354.13537.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5354.13537.1 vs. uniprot
Match: A0A6H5JGI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGI5_9PHAE)

HSP 1 Score: 295 bits (754), Expect = 1.840e-93
Identity = 209/356 (58.71%), Postives = 232/356 (65.17%), Query Frame = 3
Query:   51 MEGMACFVHGLALVSVLHQSHGFSGV-CPFDPALRPSASSSFRKPSPRR----HAASARSPRRLGPSAALVSPAASGKAR--SSRNTSHACHHPTSGHGDHHQRRQRPSRCSHEDEIWPFRPRPTTTVPSSSPSSLCAVR-GSSSSSRVTSEGSSPGEVGVREDDEAGGGLAADAGKTAPRARKRKKGDKKDKNNKSVLGKAGDALKATFNVFMAASTVVSLALAAEALWQLHGTQLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPIMLSGTWVILQNAPKLLPQGSDLGGAGSLAALLATPEVLEAAAVVALLGGTAVWALNFATGAVGALMPRQRDSSQEQD 1094
            + GMA F H LAL   L Q   F+ V  P  PA     SSSFR+PS         ASA SP R  PS +L  P     AR  SS N   AC     GH      R R  RC  +   W  R RP +T       SL AVR G+SSSS   S G         E +EAG GL A        +R+ K   +  +  KSVL KAG+ALKA FN FMAAST+ SLALAAEA+WQLHG  LTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLP+M+SGTWVILQNAPKL P+G DL GAGSLAALLATPEVLEAAAV+ALLGGTA+WALNFATGAVGALMP Q  SS+E++
Sbjct:   14 LGGMARFAHALALACFLRQCGAFNPVGAPPSPAF----SSSFRQPSSLATCCGRVASATSPSRFVPSGSLACPTPPQAARLHSSNNPGDACR--PEGH------RNRRQRCQRDGTEWRLRRRPWST-------SLSAVREGTSSSSGAPSSGQDQ-----LEGEEAGWGLPASGESEPGGSRETKNRGRGKEGGKSVLEKAGNALKAAFNAFMAASTLASLALAAEAVWQLHGAPLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPVMVSGTWVILQNAPKLFPKGLDLTGAGSLAALLATPEVLEAAAVIALLGGTAIWALNFATGAVGALMPGQSKSSREEE 345          
BLAST of mRNA_L-elsbetiae_contig5354.13537.1 vs. uniprot
Match: D7FYX7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYX7_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 1.050e-54
Identity = 152/291 (52.23%), Postives = 170/291 (58.42%), Query Frame = 3
Query:   51 MEGMACFVHGLALVSVLHQSHGFSGVCPFDPALRPSASSSFRKPSPRR----HAASARSPRRLGPSAALVSPAASGKAR--SSRNTSHACHHPTSGHGDHHQRRQRPSRCSHEDEIWPFRPRPTTTVPSSSPSSLCAVRGSSSSSRVTSEGSSPGEVGVREDDEAGGGLAADAGKTAPRARKRKKGDKKDKNNKSVLGKAGDALKATFNVFMAASTVVSLALAAEALWQLHGTQLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPIMLSGTWVILQNAPK 905
            + GM    H LAL   L Q   F    P      P+ SSSFR+PS        AASA SPRRL PSA+L  P     AR  SS N   AC     GH      R R  R   +   W  R RP+ T       SL AVR  +SSS   S   +P      E +E G GL A        +R+ K     ++  K VL KAG+ALKA FN FMAAST+ SL LAAEA+WQLHG  LTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLP+M+SGTWVILQNAPK
Sbjct:   14 LGGMVRLAHALALTCFLRQCGAFH---PVGAPPSPAVSSSFRQPSTLTTCCGRAASATSPRRLVPSASLACPTPPQAARLHSSNNPGDACR--PEGH------RNRRYRRRDDGTEWRLRRRPSLT-------SLSAVREGTSSS---SSAPAPAGQDQLEGEEVGWGLPASREPEPGGSRETKNKGGGEEGGKPVLEKAGNALKAAFNAFMAASTLASLVLAAEAVWQLHGAPLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPVMVSGTWVILQNAPK 283          
BLAST of mRNA_L-elsbetiae_contig5354.13537.1 vs. uniprot
Match: A0A836CM52_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM52_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.430e-18
Identity = 61/167 (36.53%), Postives = 96/167 (57.49%), Query Frame = 3
Query:  606 NNKSVLGKAGDALKATFNVFMAASTVVSLALAAEALWQLHGTQLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPIMLSGTWVILQNAPKLLPQGSDLGGAGSLAALLATPEVLEAAAVVALLGGTAVWALNFATGAVGALMPRQRDSSQEQDXXXD 1106
            N++S     G+ +++ +N  + A TV S+ LA +A+ +L    +TL     TL  LLPL   GV GAA+LV ++ R+VRV+VT+P++L G ++   + P LL    DL   G L A+LATPEVLEA A++A++ G  +W +    G V  +   + +   + D   D
Sbjct:   18 NDESSTRSIGEVVRSAWNGLLVALTVASVVLAVDAVVKLKTQPITLD----TLGNLLPLAAFGVAGAARLVAVLLRLVRVLVTVPVVLGGAYLAAPSIPDLLKHSPDLA-TGGLFAVLATPEVLEAIALIAVIVGAGIWIVRQLAGMVTGMASVRGNDGDDSDDEYD 179          
BLAST of mRNA_L-elsbetiae_contig5354.13537.1 vs. uniprot
Match: A0A7S2V4B2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4B2_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 7.340e-11
Identity = 42/142 (29.58%), Postives = 73/142 (51.41%), Query Frame = 3
Query:  597 KDKNNKSVLGKAGDALKATFNVFMAASTVVSLALAAEALWQLHGTQLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPIMLSGTWVILQNAPKLLPQGSDLGGAGSLAALLATPEVLEAAAVVALLGGTAVW 1022
            +D+  K       D+ K  F   +    + S+  A  A+++L+    TLSN   T+T +LP    G FG  +L+G   R+VR+++++PI++ GTW +    P+ +    DL    SL  + A PE++EA  ++  +G    W
Sbjct:  115 RDQKGKITFQSVLDSAKKAFGFLLVGVAIYSVYTAGTAVYKLYTEPFTLSNLGSTVTNVLPALTFGYFGTLKLIGAFMRLVRILLSVPIVVGGTWFLAPRLPEFIQSSPDLAST-SLLGIFAVPEIVEAIILILFVGSFLFW 255          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5354.13537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JGI5_9PHAE1.840e-9358.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYX7_ECTSI1.050e-5452.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CM52_9STRA2.430e-1836.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V4B2_9STRA7.340e-1129.58Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5354contigL-elsbetiae_contig5354:6223..8302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_002870.1
Exons3
Model size1318
Cds size1068
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5354.13537.1prot_L-elsbetiae_contig5354.13537.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5354 6273..8102 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816556.5503914-UTR-L-elsbetiae_contig5354:6222..62721622816556.5503914-UTR-L-elsbetiae_contig5354:6222..6272Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5354 6223..6272 +
1691683645.1780543-UTR-L-elsbetiae_contig5354:6222..62721691683645.1780543-UTR-L-elsbetiae_contig5354:6222..6272Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5354 6223..6272 +
1622816556.5957224-UTR-L-elsbetiae_contig5354:8102..83021622816556.5957224-UTR-L-elsbetiae_contig5354:8102..8302Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5354 8103..8302 +
1691683645.2216048-UTR-L-elsbetiae_contig5354:8102..83021691683645.2216048-UTR-L-elsbetiae_contig5354:8102..8302Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5354 8103..8302 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816556.563939-CDS-L-elsbetiae_contig5354:6272..63361622816556.563939-CDS-L-elsbetiae_contig5354:6272..6336Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5354 6273..6336 +
1691683645.19035-CDS-L-elsbetiae_contig5354:6272..63361691683645.19035-CDS-L-elsbetiae_contig5354:6272..6336Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5354 6273..6336 +
1622816556.5747929-CDS-L-elsbetiae_contig5354:6943..77341622816556.5747929-CDS-L-elsbetiae_contig5354:6943..7734Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5354 6944..7734 +
1691683645.2003973-CDS-L-elsbetiae_contig5354:6943..77341691683645.2003973-CDS-L-elsbetiae_contig5354:6943..7734Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5354 6944..7734 +
1622816556.5856464-CDS-L-elsbetiae_contig5354:7889..81021622816556.5856464-CDS-L-elsbetiae_contig5354:7889..8102Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5354 7890..8102 +
1691683645.2120738-CDS-L-elsbetiae_contig5354:7889..81021691683645.2120738-CDS-L-elsbetiae_contig5354:7889..8102Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5354 7890..8102 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5354.13537.1

>prot_L-elsbetiae_contig5354.13537.1 ID=prot_L-elsbetiae_contig5354.13537.1|Name=mRNA_L-elsbetiae_contig5354.13537.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=356bp
MEGMACFVHGLALVSVLHQSHGFSGVCPFDPALRPSASSSFRKPSPRRHA
ASARSPRRLGPSAALVSPAASGKARSSRNTSHACHHPTSGHGDHHQRRQR
PSRCSHEDEIWPFRPRPTTTVPSSSPSSLCAVRGSSSSSRVTSEGSSPGE
VGVREDDEAGGGLAADAGKTAPRARKRKKGDKKDKNNKSVLGKAGDALKA
TFNVFMAASTVVSLALAAEALWQLHGTQLTLSNAVPTLTKLLPLTGIGVF
GAAQLVGLVARVVRVIVTLPIMLSGTWVILQNAPKLLPQGSDLGGAGSLA
ALLATPEVLEAAAVVALLGGTAVWALNFATGAVGALMPRQRDSSQEQDED
EDELA*
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mRNA from alignment at L-elsbetiae_contig5354:6223..8302+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5354.13537.1 ID=mRNA_L-elsbetiae_contig5354.13537.1|Name=mRNA_L-elsbetiae_contig5354.13537.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2080bp|location=Sequence derived from alignment at L-elsbetiae_contig5354:6223..8302+ (Laminarionema elsbetiae ELsaHSoW15)
TGTCCTGGCTGTGGACGCCGCGCAGGCGTATCTCTATATACACCACGCTC ATGGAAGGAATGGCATGCTTTGTGCACGGGCTTGCCCTGGTGTCCGTGCT TCATCAGAGTCACGGTGAGTCTGCTCTGTGACACATCAAATGTGTGCTCC CTTGTAGACAGCTCTTGTATGTACGTGGAATTTGTACATACAGCGGCCTG GTCGCGGTAGTAGCAACACGAGTGTTCTTCATGGGTTGGTATGTTGATTG CGACTAATGGCTGGGTTATTCCCTTGGTCCTTCCTGTTCGCCAACGTTTG AGCGCTCGTAAATCATGTTGATTCCGTACACAATGGTATGATGTCACCGC GTGTCTAGACTACTCAGTCTTGCGCGGGCTCTCTCTGCGCGGGCTCGCTT GTCTCGACAAACAGAGGGGGCACATCGACTCGCAGGGTCAACCTGTTTTT CGAGACTACCGCCCTCGATTGCTGAGGCATTGGTGTGCAGATGCATAGTT AGAGGAGTTTACACAGCAGCACAACAGACAGCGTAGTAGTAGTAGCAGGT GCGGCGGAACCGGTTGACCTGCTGGAGAACCGACGTGCTCACTTAGGATC TTTTGACCCTCGACTGCTGTGTCACCACATTCCCAACTCCTTTTCCCGTT CTCCCCGGTGGCGCTCGATGCTGATTGTTATTACCGGTCCTCCGCCACAA TATCATCCCTCCTCTCCACAGGGTTCAGCGGGGTTTGTCCCTTCGATCCA GCCCTTCGCCCCTCCGCCTCTTCTTCCTTCCGGAAGCCGTCACCTCGGCG CCATGCCGCCAGCGCGCGCTCTCCGCGGCGGTTAGGCCCGTCCGCCGCCC TCGTCTCTCCCGCAGCGTCGGGAAAGGCGAGATCGTCCAGAAATACAAGC CACGCGTGCCACCACCCTACCAGCGGCCACGGCGACCACCACCAGAGAAG GCAACGACCCTCACGCTGCTCCCACGAAGACGAGATCTGGCCATTTCGTC CAAGACCAACTACTACTGTGCCTTCTTCCTCGCCGTCCTCTTTGTGCGCC GTCAGGGGAAGCAGCAGCAGCAGCAGGGTTACTTCGGAAGGATCGTCACC TGGAGAGGTGGGGGTGCGAGAAGACGATGAGGCCGGGGGGGGGCTTGCTG CGGACGCCGGGAAGACGGCGCCCCGCGCGCGGAAGCGGAAGAAGGGGGAC AAGAAGGACAAGAACAATAAGTCGGTGCTAGGGAAAGCCGGGGATGCGTT AAAGGCGACGTTCAACGTCTTCATGGCGGCGAGCACCGTCGTGTCTCTGG CCTTGGCGGCGGAGGCCCTCTGGCAGCTGCACGGCACGCAGCTCACGCTC TCGAACGCGGTGCCGACGCTCACGAAGCTGCTCCCGCTGACCGGCATCGG CGTGTTCGGCGCGGCGCAGCTGGTCGGCCTGGTGGCGAGGGTGGTGAGGG TCATAGTGACGCTTCCCATCATGCTCAGCGGCACGTGGGTCATCCTGCAG AACGCTCCCAAGGTGGGCTGTATCGTTGTTGATATGTAGACACGTGCGCT GCTGCTGCTGCTGCTGCTGCTGCTGTGTGTTGCGTGTTGTCTTCACATCA AAAACCGTTCCGGTATCTCTATCCTGATCTCTCTTCATCGTCTTGTTTTG TACATATACGTATCTAGCTTCTGCCGCAAGGGTCTGACCTGGGAGGAGCG GGATCGCTCGCGGCGCTGCTTGCCACCCCCGAGGTGCTGGAGGCTGCCGC TGTCGTGGCGCTCCTGGGGGGCACCGCTGTATGGGCGCTCAACTTTGCGA CGGGGGCGGTAGGGGCGTTGATGCCGAGGCAGAGAGATTCCTCTCAGGAG CAAGACGAAGACGAAGATGAGCTGGCTTAAGGTAGTGGGGTGCTCTGCTC TTCTCTCGCCGTGTCGTTCGTATTCAGGCCCGAAGAGGCGTTGGACTGCT TGTTCTGCCTGAAATGCAGAGCCTGCGTACCGTAGGTGACACAAGATACC ACACCCCCTGGACAGATTTTCAAAGCTCGATTCCTCCCCCGCAAGAAGAG TGCCAGTGCCAAAAAGGGTGGCGTTGGAAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5354:6223..8302+

>mRNA_L-elsbetiae_contig5354.13537.1 ID=mRNA_L-elsbetiae_contig5354.13537.1|Name=mRNA_L-elsbetiae_contig5354.13537.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2136bp|location=Sequence derived from alignment at L-elsbetiae_contig5354:6223..8302+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAGGAATGGCATGCTTTGTGCACGGGCTTGCCCTGGTGTCCGTGCT
TCATCAGAGTCACGATGGAAGGAATGGCATGCTTTGTGCACGGGCTTGCC
CTGGTGTCCGTGCTTCATCAGAGTCACGGGTTCAGCGGGGTTTGTCCCTT
CGATCCAGCCCTTCGCCCCTCCGCCTCTTCTTCCTTCCGGAAGCCGTCAC
CTCGGCGCCATGCCGCCAGCGCGCGCTCTCCGCGGCGGTTAGGCCCGTCC
GCCGCCCTCGTCTCTCCCGCAGCGTCGGGAAAGGCGAGATCGTCCAGAAA
TACAAGCCACGCGTGCCACCACCCTACCAGCGGCCACGGCGACCACCACC
AGAGAAGGCAACGACCCTCACGCTGCTCCCACGAAGACGAGATCTGGCCA
TTTCGTCCAAGACCAACTACTACTGTGCCTTCTTCCTCGCCGTCCTCTTT
GTGCGCCGTCAGGGGAAGCAGCAGCAGCAGCAGGGTTACTTCGGAAGGAT
CGTCACCTGGAGAGGTGGGGGTGCGAGAAGACGATGAGGCCGGGGGGGGG
CTTGCTGCGGACGCCGGGAAGACGGCGCCCCGCGCGCGGAAGCGGAAGAA
GGGGGACAAGAAGGACAAGAACAATAAGTCGGTGCTAGGGAAAGCCGGGG
ATGCGTTAAAGGCGACGTTCAACGTCTTCATGGCGGCGAGCACCGTCGTG
TCTCTGGCCTTGGCGGCGGAGGCCCTCTGGCAGCTGCACGGCACGCAGCT
CACGCTCTCGAACGCGGTGCCGACGCTCACGAAGCTGCTCCCGCTGACCG
GCATCGGCGTGTTCGGCGCGGCGCAGCTGGTCGGCCTGGTGGCGAGGGTG
GTGAGGGTCATAGTGACGCTTCCCATCATGCTCAGCGGCACGTGGGTCAT
CCTGCAGAACGCTCCCAAGGGTTCAGCGGGGTTTGTCCCTTCGATCCAGC
CCTTCGCCCCTCCGCCTCTTCTTCCTTCCGGAAGCCGTCACCTCGGCGCC
ATGCCGCCAGCGCGCGCTCTCCGCGGCGGTTAGGCCCGTCCGCCGCCCTC
GTCTCTCCCGCAGCGTCGGGAAAGGCGAGATCGTCCAGAAATACAAGCCA
CGCGTGCCACCACCCTACCAGCGGCCACGGCGACCACCACCAGAGAAGGC
AACGACCCTCACGCTGCTCCCACGAAGACGAGATCTGGCCATTTCGTCCA
AGACCAACTACTACTGTGCCTTCTTCCTCGCCGTCCTCTTTGTGCGCCGT
CAGGGGAAGCAGCAGCAGCAGCAGGGTTACTTCGGAAGGATCGTCACCTG
GAGAGGTGGGGGTGCGAGAAGACGATGAGGCCGGGGGGGGGCTTGCTGCG
GACGCCGGGAAGACGGCGCCCCGCGCGCGGAAGCGGAAGAAGGGGGACAA
GAAGGACAAGAACAATAAGTCGGTGCTAGGGAAAGCCGGGGATGCGTTAA
AGGCGACGTTCAACGTCTTCATGGCGGCGAGCACCGTCGTGTCTCTGGCC
TTGGCGGCGGAGGCCCTCTGGCAGCTGCACGGCACGCAGCTCACGCTCTC
GAACGCGGTGCCGACGCTCACGAAGCTGCTCCCGCTGACCGGCATCGGCG
TGTTCGGCGCGGCGCAGCTGGTCGGCCTGGTGGCGAGGGTGGTGAGGGTC
ATAGTGACGCTTCCCATCATGCTCAGCGGCACGTGGGTCATCCTGCAGAA
CGCTCCCAAGCTTCTGCCGCAAGGGTCTGACCTGGGAGGAGCGGGATCGC
TCGCGGCGCTGCTTGCCACCCCCGAGGTGCTGGAGGCTGCCGCTGTCGTG
GCGCTCCTGGGGGGCACCGCTGTATGGGCGCTCAACTTTGCGACGGGGGC
GGTAGGGGCGTTGATGCCGAGGCAGAGAGATTCCTCTCAGGAGCAAGACG
AAGACGAAGATGAGCTGGCTTAACTTCTGCCGCAAGGGTCTGACCTGGGA
GGAGCGGGATCGCTCGCGGCGCTGCTTGCCACCCCCGAGGTGCTGGAGGC
TGCCGCTGTCGTGGCGCTCCTGGGGGGCACCGCTGTATGGGCGCTCAACT
TTGCGACGGGGGCGGTAGGGGCGTTGATGCCGAGGCAGAGAGATTCCTCT
CAGGAGCAAGACGAAGACGAAGATGAGCTGGCTTAA
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