Homology
BLAST of mRNA_L-elsbetiae_contig5354.13537.1 vs. uniprot
Match:
A0A6H5JGI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGI5_9PHAE)
HSP 1 Score: 295 bits (754), Expect = 1.840e-93
Identity = 209/356 (58.71%), Postives = 232/356 (65.17%), Query Frame = 3
Query: 51 MEGMACFVHGLALVSVLHQSHGFSGV-CPFDPALRPSASSSFRKPSPRR----HAASARSPRRLGPSAALVSPAASGKAR--SSRNTSHACHHPTSGHGDHHQRRQRPSRCSHEDEIWPFRPRPTTTVPSSSPSSLCAVR-GSSSSSRVTSEGSSPGEVGVREDDEAGGGLAADAGKTAPRARKRKKGDKKDKNNKSVLGKAGDALKATFNVFMAASTVVSLALAAEALWQLHGTQLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPIMLSGTWVILQNAPKLLPQGSDLGGAGSLAALLATPEVLEAAAVVALLGGTAVWALNFATGAVGALMPRQRDSSQEQD 1094
+ GMA F H LAL L Q F+ V P PA SSSFR+PS ASA SP R PS +L P AR SS N AC GH R R RC + W R RP +T SL AVR G+SSSS S G E +EAG GL A +R+ K + + KSVL KAG+ALKA FN FMAAST+ SLALAAEA+WQLHG LTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLP+M+SGTWVILQNAPKL P+G DL GAGSLAALLATPEVLEAAAV+ALLGGTA+WALNFATGAVGALMP Q SS+E++
Sbjct: 14 LGGMARFAHALALACFLRQCGAFNPVGAPPSPAF----SSSFRQPSSLATCCGRVASATSPSRFVPSGSLACPTPPQAARLHSSNNPGDACR--PEGH------RNRRQRCQRDGTEWRLRRRPWST-------SLSAVREGTSSSSGAPSSGQDQ-----LEGEEAGWGLPASGESEPGGSRETKNRGRGKEGGKSVLEKAGNALKAAFNAFMAASTLASLALAAEAVWQLHGAPLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPVMVSGTWVILQNAPKLFPKGLDLTGAGSLAALLATPEVLEAAAVIALLGGTAIWALNFATGAVGALMPGQSKSSREEE 345
BLAST of mRNA_L-elsbetiae_contig5354.13537.1 vs. uniprot
Match:
D7FYX7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYX7_ECTSI)
HSP 1 Score: 192 bits (489), Expect = 1.050e-54
Identity = 152/291 (52.23%), Postives = 170/291 (58.42%), Query Frame = 3
Query: 51 MEGMACFVHGLALVSVLHQSHGFSGVCPFDPALRPSASSSFRKPSPRR----HAASARSPRRLGPSAALVSPAASGKAR--SSRNTSHACHHPTSGHGDHHQRRQRPSRCSHEDEIWPFRPRPTTTVPSSSPSSLCAVRGSSSSSRVTSEGSSPGEVGVREDDEAGGGLAADAGKTAPRARKRKKGDKKDKNNKSVLGKAGDALKATFNVFMAASTVVSLALAAEALWQLHGTQLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPIMLSGTWVILQNAPK 905
+ GM H LAL L Q F P P+ SSSFR+PS AASA SPRRL PSA+L P AR SS N AC GH R R R + W R RP+ T SL AVR +SSS S +P E +E G GL A +R+ K ++ K VL KAG+ALKA FN FMAAST+ SL LAAEA+WQLHG LTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLP+M+SGTWVILQNAPK
Sbjct: 14 LGGMVRLAHALALTCFLRQCGAFH---PVGAPPSPAVSSSFRQPSTLTTCCGRAASATSPRRLVPSASLACPTPPQAARLHSSNNPGDACR--PEGH------RNRRYRRRDDGTEWRLRRRPSLT-------SLSAVREGTSSS---SSAPAPAGQDQLEGEEVGWGLPASREPEPGGSRETKNKGGGEEGGKPVLEKAGNALKAAFNAFMAASTLASLVLAAEAVWQLHGAPLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPVMVSGTWVILQNAPK 283
BLAST of mRNA_L-elsbetiae_contig5354.13537.1 vs. uniprot
Match:
A0A836CM52_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM52_9STRA)
HSP 1 Score: 92.4 bits (228), Expect = 2.430e-18
Identity = 61/167 (36.53%), Postives = 96/167 (57.49%), Query Frame = 3
Query: 606 NNKSVLGKAGDALKATFNVFMAASTVVSLALAAEALWQLHGTQLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPIMLSGTWVILQNAPKLLPQGSDLGGAGSLAALLATPEVLEAAAVVALLGGTAVWALNFATGAVGALMPRQRDSSQEQDXXXD 1106
N++S G+ +++ +N + A TV S+ LA +A+ +L +TL TL LLPL GV GAA+LV ++ R+VRV+VT+P++L G ++ + P LL DL G L A+LATPEVLEA A++A++ G +W + G V + + + + D D
Sbjct: 18 NDESSTRSIGEVVRSAWNGLLVALTVASVVLAVDAVVKLKTQPITLD----TLGNLLPLAAFGVAGAARLVAVLLRLVRVLVTVPVVLGGAYLAAPSIPDLLKHSPDLA-TGGLFAVLATPEVLEAIALIAVIVGAGIWIVRQLAGMVTGMASVRGNDGDDSDDEYD 179
BLAST of mRNA_L-elsbetiae_contig5354.13537.1 vs. uniprot
Match:
A0A7S2V4B2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4B2_9STRA)
HSP 1 Score: 73.2 bits (178), Expect = 7.340e-11
Identity = 42/142 (29.58%), Postives = 73/142 (51.41%), Query Frame = 3
Query: 597 KDKNNKSVLGKAGDALKATFNVFMAASTVVSLALAAEALWQLHGTQLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPIMLSGTWVILQNAPKLLPQGSDLGGAGSLAALLATPEVLEAAAVVALLGGTAVW 1022
+D+ K D+ K F + + S+ A A+++L+ TLSN T+T +LP G FG +L+G R+VR+++++PI++ GTW + P+ + DL SL + A PE++EA ++ +G W
Sbjct: 115 RDQKGKITFQSVLDSAKKAFGFLLVGVAIYSVYTAGTAVYKLYTEPFTLSNLGSTVTNVLPALTFGYFGTLKLIGAFMRLVRILLSVPIVVGGTWFLAPRLPEFIQSSPDLAST-SLLGIFAVPEIVEAIILILFVGSFLFW 255
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5354.13537.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 4
0 1 Expect = 1.84e-93 / Id = 58.71 Expect = 1.05e-54 / Id = 52.23 Expect = 2.43e-18 / Id = 36.53 Expect = 7.34e-11 / Id = 29.58 Sequence A0A6H5JGI5_9PHAE D7FYX7_ECTSI A0A836CM52_9STRA A0A7S2V4B2_9STRA
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category chloroplast
Ec32 ortholog description hypothetical protein
Ec32 ortholog Ec-19_002870.1
Exons 3
Model size 1318
Cds size 1068
Stop 1
Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816556.5503914-UTR-L-elsbetiae_contig5354:6222..6272 1622816556.5503914-UTR-L-elsbetiae_contig5354:6222..6272 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig5354 6223..6272 +
1691683645.1780543-UTR-L-elsbetiae_contig5354:6222..6272 1691683645.1780543-UTR-L-elsbetiae_contig5354:6222..6272 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig5354 6223..6272 +
1622816556.5957224-UTR-L-elsbetiae_contig5354:8102..8302 1622816556.5957224-UTR-L-elsbetiae_contig5354:8102..8302 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig5354 8103..8302 +
1691683645.2216048-UTR-L-elsbetiae_contig5354:8102..8302 1691683645.2216048-UTR-L-elsbetiae_contig5354:8102..8302 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig5354 8103..8302 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816556.563939-CDS-L-elsbetiae_contig5354:6272..6336 1622816556.563939-CDS-L-elsbetiae_contig5354:6272..6336 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5354 6273..6336 +
1691683645.19035-CDS-L-elsbetiae_contig5354:6272..6336 1691683645.19035-CDS-L-elsbetiae_contig5354:6272..6336 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5354 6273..6336 +
1622816556.5747929-CDS-L-elsbetiae_contig5354:6943..7734 1622816556.5747929-CDS-L-elsbetiae_contig5354:6943..7734 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5354 6944..7734 +
1691683645.2003973-CDS-L-elsbetiae_contig5354:6943..7734 1691683645.2003973-CDS-L-elsbetiae_contig5354:6943..7734 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5354 6944..7734 +
1622816556.5856464-CDS-L-elsbetiae_contig5354:7889..8102 1622816556.5856464-CDS-L-elsbetiae_contig5354:7889..8102 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5354 7890..8102 +
1691683645.2120738-CDS-L-elsbetiae_contig5354:7889..8102 1691683645.2120738-CDS-L-elsbetiae_contig5354:7889..8102 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5354 7890..8102 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5354.13537.1
>prot_L-elsbetiae_contig5354.13537.1 ID=prot_L-elsbetiae_contig5354.13537.1|Name=mRNA_L-elsbetiae_contig5354.13537.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=356bp
MEGMACFVHGLALVSVLHQSHGFSGVCPFDPALRPSASSSFRKPSPRRHA ASARSPRRLGPSAALVSPAASGKARSSRNTSHACHHPTSGHGDHHQRRQR PSRCSHEDEIWPFRPRPTTTVPSSSPSSLCAVRGSSSSSRVTSEGSSPGE VGVREDDEAGGGLAADAGKTAPRARKRKKGDKKDKNNKSVLGKAGDALKA TFNVFMAASTVVSLALAAEALWQLHGTQLTLSNAVPTLTKLLPLTGIGVF GAAQLVGLVARVVRVIVTLPIMLSGTWVILQNAPKLLPQGSDLGGAGSLA ALLATPEVLEAAAVVALLGGTAVWALNFATGAVGALMPRQRDSSQEQDED EDELA* back to top mRNA from alignment at L-elsbetiae_contig5354:6223..8302+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5354.13537.1 ID=mRNA_L-elsbetiae_contig5354.13537.1|Name=mRNA_L-elsbetiae_contig5354.13537.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2080bp|location=Sequence derived from alignment at L-elsbetiae_contig5354:6223..8302+ (Laminarionema elsbetiae ELsaHSoW15)TGTCCTGGCTGTGGACGCCGCGCAGGCGTATCTCTATATACACCACGCTC
ATGGAAGGAATGGCATGCTTTGTGCACGGGCTTGCCCTGGTGTCCGTGCT
TCATCAGAGTCACG GTGAGTCTGCTCTGTGACACATCAAATGTGTGCTCC
CTTGTAGACAGCTCTTGTATGTACGTGGAATTTGTACATACAGCGGCCTG
GTCGCGGTAGTAGCAACACGAGTGTTCTTCATGGGTTGGTATGTTGATTG
CGACTAATGGCTGGGTTATTCCCTTGGTCCTTCCTGTTCGCCAACGTTTG
AGCGCTCGTAAATCATGTTGATTCCGTACACAATGGTATGATGTCACCGC
GTGTCTAGACTACTCAGTCTTGCGCGGGCTCTCTCTGCGCGGGCTCGCTT
GTCTCGACAAACAGAGGGGGCACATCGACTCGCAGGGTCAACCTGTTTTT
CGAGACTACCGCCCTCGATTGCTGAGGCATTGGTGTGCAGATGCATAGTT
AGAGGAGTTTACACAGCAGCACAACAGACAGCGTAGTAGTAGTAGCAGGT
GCGGCGGAACCGGTTGACCTGCTGGAGAACCGACGTGCTCACTTAGGATC
TTTTGACCCTCGACTGCTGTGTCACCACATTCCCAACTCCTTTTCCCGTT
CTCCCCGGTGGCGCTCGATGCTGATTGTTATTACCGGTCCTCCGCCACAA
TATCATCCCTCCTCTCCACAGGGTTCAGCGGGGTTTGTCCCTTCGATCCA
GCCCTTCGCCCCTCCGCCTCTTCTTCCTTCCGGAAGCCGTCACCTCGGCG
CCATGCCGCCAGCGCGCGCTCTCCGCGGCGGTTAGGCCCGTCCGCCGCCC
TCGTCTCTCCCGCAGCGTCGGGAAAGGCGAGATCGTCCAGAAATACAAGC
CACGCGTGCCACCACCCTACCAGCGGCCACGGCGACCACCACCAGAGAAG
GCAACGACCCTCACGCTGCTCCCACGAAGACGAGATCTGGCCATTTCGTC
CAAGACCAACTACTACTGTGCCTTCTTCCTCGCCGTCCTCTTTGTGCGCC
GTCAGGGGAAGCAGCAGCAGCAGCAGGGTTACTTCGGAAGGATCGTCACC
TGGAGAGGTGGGGGTGCGAGAAGACGATGAGGCCGGGGGGGGGCTTGCTG
CGGACGCCGGGAAGACGGCGCCCCGCGCGCGGAAGCGGAAGAAGGGGGAC
AAGAAGGACAAGAACAATAAGTCGGTGCTAGGGAAAGCCGGGGATGCGTT
AAAGGCGACGTTCAACGTCTTCATGGCGGCGAGCACCGTCGTGTCTCTGG
CCTTGGCGGCGGAGGCCCTCTGGCAGCTGCACGGCACGCAGCTCACGCTC
TCGAACGCGGTGCCGACGCTCACGAAGCTGCTCCCGCTGACCGGCATCGG
CGTGTTCGGCGCGGCGCAGCTGGTCGGCCTGGTGGCGAGGGTGGTGAGGG
TCATAGTGACGCTTCCCATCATGCTCAGCGGCACGTGGGTCATCCTGCAG
AACGCTCCCAAG GTGGGCTGTATCGTTGTTGATATGTAGACACGTGCGCT
GCTGCTGCTGCTGCTGCTGCTGCTGTGTGTTGCGTGTTGTCTTCACATCA
AAAACCGTTCCGGTATCTCTATCCTGATCTCTCTTCATCGTCTTGTTTTG
TACATATACGTATCTAGCTTCTGCCGCAAGGGTCTGACCTGGGAGGAGCG
GGATCGCTCGCGGCGCTGCTTGCCACCCCCGAGGTGCTGGAGGCTGCCGC
TGTCGTGGCGCTCCTGGGGGGCACCGCTGTATGGGCGCTCAACTTTGCGA
CGGGGGCGGTAGGGGCGTTGATGCCGAGGCAGAGAGATTCCTCTCAGGAG
CAAGACGAAGACGAAGATGAGCTGGCTTAA GGTAGTGGGGTGCTCTGCTC
TTCTCTCGCCGTGTCGTTCGTATTCAGGCCCGAAGAGGCGTTGGACTGCT
TGTTCTGCCTGAAATGCAGAGCCTGCGTACCGTAGGTGACACAAGATACC
ACACCCCCTGGACAGATTTTCAAAGCTCGATTCCTCCCCCGCAAGAAGAG
TGCCAGTGCCAAAAAGGGTGGCGTTGGAAA back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5354:6223..8302+
>mRNA_L-elsbetiae_contig5354.13537.1 ID=mRNA_L-elsbetiae_contig5354.13537.1|Name=mRNA_L-elsbetiae_contig5354.13537.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2136bp|location=Sequence derived from alignment at L-elsbetiae_contig5354:6223..8302+ (Laminarionema elsbetiae ELsaHSoW15) ATGGAAGGAATGGCATGCTTTGTGCACGGGCTTGCCCTGGTGTCCGTGCT TCATCAGAGTCACGATGGAAGGAATGGCATGCTTTGTGCACGGGCTTGCC CTGGTGTCCGTGCTTCATCAGAGTCACGGGTTCAGCGGGGTTTGTCCCTT CGATCCAGCCCTTCGCCCCTCCGCCTCTTCTTCCTTCCGGAAGCCGTCAC CTCGGCGCCATGCCGCCAGCGCGCGCTCTCCGCGGCGGTTAGGCCCGTCC GCCGCCCTCGTCTCTCCCGCAGCGTCGGGAAAGGCGAGATCGTCCAGAAA TACAAGCCACGCGTGCCACCACCCTACCAGCGGCCACGGCGACCACCACC AGAGAAGGCAACGACCCTCACGCTGCTCCCACGAAGACGAGATCTGGCCA TTTCGTCCAAGACCAACTACTACTGTGCCTTCTTCCTCGCCGTCCTCTTT GTGCGCCGTCAGGGGAAGCAGCAGCAGCAGCAGGGTTACTTCGGAAGGAT CGTCACCTGGAGAGGTGGGGGTGCGAGAAGACGATGAGGCCGGGGGGGGG CTTGCTGCGGACGCCGGGAAGACGGCGCCCCGCGCGCGGAAGCGGAAGAA GGGGGACAAGAAGGACAAGAACAATAAGTCGGTGCTAGGGAAAGCCGGGG ATGCGTTAAAGGCGACGTTCAACGTCTTCATGGCGGCGAGCACCGTCGTG TCTCTGGCCTTGGCGGCGGAGGCCCTCTGGCAGCTGCACGGCACGCAGCT CACGCTCTCGAACGCGGTGCCGACGCTCACGAAGCTGCTCCCGCTGACCG GCATCGGCGTGTTCGGCGCGGCGCAGCTGGTCGGCCTGGTGGCGAGGGTG GTGAGGGTCATAGTGACGCTTCCCATCATGCTCAGCGGCACGTGGGTCAT CCTGCAGAACGCTCCCAAGGGTTCAGCGGGGTTTGTCCCTTCGATCCAGC CCTTCGCCCCTCCGCCTCTTCTTCCTTCCGGAAGCCGTCACCTCGGCGCC ATGCCGCCAGCGCGCGCTCTCCGCGGCGGTTAGGCCCGTCCGCCGCCCTC GTCTCTCCCGCAGCGTCGGGAAAGGCGAGATCGTCCAGAAATACAAGCCA CGCGTGCCACCACCCTACCAGCGGCCACGGCGACCACCACCAGAGAAGGC AACGACCCTCACGCTGCTCCCACGAAGACGAGATCTGGCCATTTCGTCCA AGACCAACTACTACTGTGCCTTCTTCCTCGCCGTCCTCTTTGTGCGCCGT CAGGGGAAGCAGCAGCAGCAGCAGGGTTACTTCGGAAGGATCGTCACCTG GAGAGGTGGGGGTGCGAGAAGACGATGAGGCCGGGGGGGGGCTTGCTGCG GACGCCGGGAAGACGGCGCCCCGCGCGCGGAAGCGGAAGAAGGGGGACAA GAAGGACAAGAACAATAAGTCGGTGCTAGGGAAAGCCGGGGATGCGTTAA AGGCGACGTTCAACGTCTTCATGGCGGCGAGCACCGTCGTGTCTCTGGCC TTGGCGGCGGAGGCCCTCTGGCAGCTGCACGGCACGCAGCTCACGCTCTC GAACGCGGTGCCGACGCTCACGAAGCTGCTCCCGCTGACCGGCATCGGCG TGTTCGGCGCGGCGCAGCTGGTCGGCCTGGTGGCGAGGGTGGTGAGGGTC ATAGTGACGCTTCCCATCATGCTCAGCGGCACGTGGGTCATCCTGCAGAA CGCTCCCAAGCTTCTGCCGCAAGGGTCTGACCTGGGAGGAGCGGGATCGC TCGCGGCGCTGCTTGCCACCCCCGAGGTGCTGGAGGCTGCCGCTGTCGTG GCGCTCCTGGGGGGCACCGCTGTATGGGCGCTCAACTTTGCGACGGGGGC GGTAGGGGCGTTGATGCCGAGGCAGAGAGATTCCTCTCAGGAGCAAGACG AAGACGAAGATGAGCTGGCTTAACTTCTGCCGCAAGGGTCTGACCTGGGA GGAGCGGGATCGCTCGCGGCGCTGCTTGCCACCCCCGAGGTGCTGGAGGC TGCCGCTGTCGTGGCGCTCCTGGGGGGCACCGCTGTATGGGCGCTCAACT TTGCGACGGGGGCGGTAGGGGCGTTGATGCCGAGGCAGAGAGATTCCTCT CAGGAGCAAGACGAAGACGAAGATGAGCTGGCTTAA back to top