mRNA_L-elsbetiae_contig5354.13537.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5354.13537.1 vs. uniprot
Match: A0A6H5JGI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGI5_9PHAE) HSP 1 Score: 295 bits (754), Expect = 1.840e-93 Identity = 209/356 (58.71%), Postives = 232/356 (65.17%), Query Frame = 3 Query: 51 MEGMACFVHGLALVSVLHQSHGFSGV-CPFDPALRPSASSSFRKPSPRR----HAASARSPRRLGPSAALVSPAASGKAR--SSRNTSHACHHPTSGHGDHHQRRQRPSRCSHEDEIWPFRPRPTTTVPSSSPSSLCAVR-GSSSSSRVTSEGSSPGEVGVREDDEAGGGLAADAGKTAPRARKRKKGDKKDKNNKSVLGKAGDALKATFNVFMAASTVVSLALAAEALWQLHGTQLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPIMLSGTWVILQNAPKLLPQGSDLGGAGSLAALLATPEVLEAAAVVALLGGTAVWALNFATGAVGALMPRQRDSSQEQD 1094 + GMA F H LAL L Q F+ V P PA SSSFR+PS ASA SP R PS +L P AR SS N AC GH R R RC + W R RP +T SL AVR G+SSSS S G E +EAG GL A +R+ K + + KSVL KAG+ALKA FN FMAAST+ SLALAAEA+WQLHG LTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLP+M+SGTWVILQNAPKL P+G DL GAGSLAALLATPEVLEAAAV+ALLGGTA+WALNFATGAVGALMP Q SS+E++ Sbjct: 14 LGGMARFAHALALACFLRQCGAFNPVGAPPSPAF----SSSFRQPSSLATCCGRVASATSPSRFVPSGSLACPTPPQAARLHSSNNPGDACR--PEGH------RNRRQRCQRDGTEWRLRRRPWST-------SLSAVREGTSSSSGAPSSGQDQ-----LEGEEAGWGLPASGESEPGGSRETKNRGRGKEGGKSVLEKAGNALKAAFNAFMAASTLASLALAAEAVWQLHGAPLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPVMVSGTWVILQNAPKLFPKGLDLTGAGSLAALLATPEVLEAAAVIALLGGTAIWALNFATGAVGALMPGQSKSSREEE 345
BLAST of mRNA_L-elsbetiae_contig5354.13537.1 vs. uniprot
Match: D7FYX7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYX7_ECTSI) HSP 1 Score: 192 bits (489), Expect = 1.050e-54 Identity = 152/291 (52.23%), Postives = 170/291 (58.42%), Query Frame = 3 Query: 51 MEGMACFVHGLALVSVLHQSHGFSGVCPFDPALRPSASSSFRKPSPRR----HAASARSPRRLGPSAALVSPAASGKAR--SSRNTSHACHHPTSGHGDHHQRRQRPSRCSHEDEIWPFRPRPTTTVPSSSPSSLCAVRGSSSSSRVTSEGSSPGEVGVREDDEAGGGLAADAGKTAPRARKRKKGDKKDKNNKSVLGKAGDALKATFNVFMAASTVVSLALAAEALWQLHGTQLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPIMLSGTWVILQNAPK 905 + GM H LAL L Q F P P+ SSSFR+PS AASA SPRRL PSA+L P AR SS N AC GH R R R + W R RP+ T SL AVR +SSS S +P E +E G GL A +R+ K ++ K VL KAG+ALKA FN FMAAST+ SL LAAEA+WQLHG LTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLP+M+SGTWVILQNAPK Sbjct: 14 LGGMVRLAHALALTCFLRQCGAFH---PVGAPPSPAVSSSFRQPSTLTTCCGRAASATSPRRLVPSASLACPTPPQAARLHSSNNPGDACR--PEGH------RNRRYRRRDDGTEWRLRRRPSLT-------SLSAVREGTSSS---SSAPAPAGQDQLEGEEVGWGLPASREPEPGGSRETKNKGGGEEGGKPVLEKAGNALKAAFNAFMAASTLASLVLAAEAVWQLHGAPLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPVMVSGTWVILQNAPK 283
BLAST of mRNA_L-elsbetiae_contig5354.13537.1 vs. uniprot
Match: A0A836CM52_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM52_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 2.430e-18 Identity = 61/167 (36.53%), Postives = 96/167 (57.49%), Query Frame = 3 Query: 606 NNKSVLGKAGDALKATFNVFMAASTVVSLALAAEALWQLHGTQLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPIMLSGTWVILQNAPKLLPQGSDLGGAGSLAALLATPEVLEAAAVVALLGGTAVWALNFATGAVGALMPRQRDSSQEQDXXXD 1106 N++S G+ +++ +N + A TV S+ LA +A+ +L +TL TL LLPL GV GAA+LV ++ R+VRV+VT+P++L G ++ + P LL DL G L A+LATPEVLEA A++A++ G +W + G V + + + + D D Sbjct: 18 NDESSTRSIGEVVRSAWNGLLVALTVASVVLAVDAVVKLKTQPITLD----TLGNLLPLAAFGVAGAARLVAVLLRLVRVLVTVPVVLGGAYLAAPSIPDLLKHSPDLA-TGGLFAVLATPEVLEAIALIAVIVGAGIWIVRQLAGMVTGMASVRGNDGDDSDDEYD 179
BLAST of mRNA_L-elsbetiae_contig5354.13537.1 vs. uniprot
Match: A0A7S2V4B2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4B2_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 7.340e-11 Identity = 42/142 (29.58%), Postives = 73/142 (51.41%), Query Frame = 3 Query: 597 KDKNNKSVLGKAGDALKATFNVFMAASTVVSLALAAEALWQLHGTQLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPIMLSGTWVILQNAPKLLPQGSDLGGAGSLAALLATPEVLEAAAVVALLGGTAVW 1022 +D+ K D+ K F + + S+ A A+++L+ TLSN T+T +LP G FG +L+G R+VR+++++PI++ GTW + P+ + DL SL + A PE++EA ++ +G W Sbjct: 115 RDQKGKITFQSVLDSAKKAFGFLLVGVAIYSVYTAGTAVYKLYTEPFTLSNLGSTVTNVLPALTFGYFGTLKLIGAFMRLVRILLSVPIVVGGTWFLAPRLPEFIQSSPDLAST-SLLGIFAVPEIVEAIILILFVGSFLFW 255 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5354.13537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5354.13537.1 >prot_L-elsbetiae_contig5354.13537.1 ID=prot_L-elsbetiae_contig5354.13537.1|Name=mRNA_L-elsbetiae_contig5354.13537.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=356bp MEGMACFVHGLALVSVLHQSHGFSGVCPFDPALRPSASSSFRKPSPRRHAback to top mRNA from alignment at L-elsbetiae_contig5354:6223..8302+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5354.13537.1 ID=mRNA_L-elsbetiae_contig5354.13537.1|Name=mRNA_L-elsbetiae_contig5354.13537.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2080bp|location=Sequence derived from alignment at L-elsbetiae_contig5354:6223..8302+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5354:6223..8302+ >mRNA_L-elsbetiae_contig5354.13537.1 ID=mRNA_L-elsbetiae_contig5354.13537.1|Name=mRNA_L-elsbetiae_contig5354.13537.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2136bp|location=Sequence derived from alignment at L-elsbetiae_contig5354:6223..8302+ (Laminarionema elsbetiae ELsaHSoW15)back to top |