mRNA_L-elsbetiae_contig19275.5704.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19275.5704.1
Unique NamemRNA_L-elsbetiae_contig19275.5704.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19275.5704.1 vs. uniprot
Match: D8LDE8_ECTSI (RNA pseudouridylate synthase domain-containing protein (C-terminal) RNA pseudouridylate synthase dom n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE8_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 6.090e-18
Identity = 45/52 (86.54%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    1 NRQIRKICKYLCLTVNRLARTRDGSFSLGKVRAGGVAGVEILKACPRRLEEG 156
            NRQIRKICKYLCLTVNRLARTR G FSLGKVRAGGVA VEI KA  RRLE+G
Sbjct:  324 NRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVAAVEIPKAFMRRLEDG 375
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BLAST of mRNA_L-elsbetiae_contig19275.5704.1 vs. uniprot
Match: A0A6H5J790_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J790_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 9.230e-15
Identity = 39/47 (82.98%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:   16 KICKYLCLTVNRLARTRDGSFSLGKVRAGGVAGVEILKACPRRLEEG 156
            KICKYLCLTVNRLART  G FSLGKVRAGGVA VEI KA  RRLE+G
Sbjct:   42 KICKYLCLTVNRLARTGYGPFSLGKVRAGGVAAVEIPKAFMRRLEDG 88
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19275.5704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDE8_ECTSI6.090e-1886.54RNA pseudouridylate synthase domain-containing pro... [more]
A0A6H5J790_9PHAE9.230e-1582.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19275contigL-elsbetiae_contig19275:557..847 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size291
Cds size291
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815799.9072118-CDS-L-elsbetiae_contig19275:556..8471622815799.9072118-CDS-L-elsbetiae_contig19275:556..847Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19275 557..847 +
1691683110.5870917-CDS-L-elsbetiae_contig19275:556..8471691683110.5870917-CDS-L-elsbetiae_contig19275:556..847Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19275 557..847 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19275.5704.1prot_L-elsbetiae_contig19275.5704.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19275 557..847 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19275.5704.1

>prot_L-elsbetiae_contig19275.5704.1 ID=prot_L-elsbetiae_contig19275.5704.1|Name=mRNA_L-elsbetiae_contig19275.5704.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=97bp
NRQIRKICKYLCLTVNRLARTRDGSFSLGKVRAGGVAGVEILKACPRRLE
EGTAGRLSRESGGGGGSGRRMARVEQGSAGRRRLAVCRRRGRGTRL*
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mRNA from alignment at L-elsbetiae_contig19275:557..847+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19275.5704.1 ID=mRNA_L-elsbetiae_contig19275.5704.1|Name=mRNA_L-elsbetiae_contig19275.5704.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=291bp|location=Sequence derived from alignment at L-elsbetiae_contig19275:557..847+ (Laminarionema elsbetiae ELsaHSoW15)
AACCGGCAAATCCGCAAGATCTGCAAGTACCTGTGCCTGACCGTGAACCG
GCTGGCCAGGACCCGCGACGGCTCCTTCAGCCTCGGCAAGGTCCGGGCCG
GCGGGGTCGCCGGCGTGGAAATCCTGAAGGCGTGTCCGCGGCGCCTGGAG
GAGGGCACCGCCGGAAGATTATCGCGGGAAAGCGGCGGCGGCGGCGGTAG
TGGCAGGCGAATGGCAAGGGTGGAACAGGGAAGCGCCGGGAGGCGGAGGC
TAGCGGTGTGTCGCCGCCGCGGCAGGGGGACTCGTCTTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19275:557..847+

>mRNA_L-elsbetiae_contig19275.5704.1 ID=mRNA_L-elsbetiae_contig19275.5704.1|Name=mRNA_L-elsbetiae_contig19275.5704.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=582bp|location=Sequence derived from alignment at L-elsbetiae_contig19275:557..847+ (Laminarionema elsbetiae ELsaHSoW15)
AACCGGCAAATCCGCAAGATCTGCAAGTACCTGTGCCTGACCGTGAACCG
GCTGGCCAGGACCCGCGACGGCTCCTTCAGCCTCGGCAAGGTCCGGGCCG
GCGGGGTCGCCGGCGTGGAAATCCTGAAGGCGTGTCCGCGGCGCCTGGAG
GAGGGCACCGCCGGAAGATTATCGCGGGAAAGCGGCGGCGGCGGCGGTAG
TGGCAGGCGAATGGCAAGGGTGGAACAGGGAAGCGCCGGGAGGCGGAGGC
TAGCGGTGTGTCGCCGCCGCGGCAGGGGGACTCGTCTTTGAAACCGGCAA
ATCCGCAAGATCTGCAAGTACCTGTGCCTGACCGTGAACCGGCTGGCCAG
GACCCGCGACGGCTCCTTCAGCCTCGGCAAGGTCCGGGCCGGCGGGGTCG
CCGGCGTGGAAATCCTGAAGGCGTGTCCGCGGCGCCTGGAGGAGGGCACC
GCCGGAAGATTATCGCGGGAAAGCGGCGGCGGCGGCGGTAGTGGCAGGCG
AATGGCAAGGGTGGAACAGGGAAGCGCCGGGAGGCGGAGGCTAGCGGTGT
GTCGCCGCCGCGGCAGGGGGACTCGTCTTTGA
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