mRNA_L-elsbetiae_contig16410.4360.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig16410.4360.1 vs. uniprot
Match: D7FHF9_ECTSI (U2 small nuclear ribonucleoprotein auxiliary factor large subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHF9_ECTSI) HSP 1 Score: 109 bits (273), Expect = 1.430e-27 Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 1 Query: 22 QEECEKFGSVKSVHIPRPSTTSEEENPGVGFVFVAFDAVDSASKAAASLRARTFDGRKV 198 +EECEKFGSVKSVHIPRPSTTSE E PGVG+VFVAFDAVDSASKAAASLRARTFDGRKV Sbjct: 208 KEECEKFGSVKSVHIPRPSTTSEAEKPGVGYVFVAFDAVDSASKAAASLRARTFDGRKV 266
BLAST of mRNA_L-elsbetiae_contig16410.4360.1 vs. uniprot
Match: A0A3P3YJC5_PLABS (RRM domain-containing protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YJC5_PLABS) HSP 1 Score: 60.1 bits (144), Expect = 6.750e-9 Identity = 32/67 (47.76%), Postives = 45/67 (67.16%), Query Frame = 1 Query: 1 DVCFLRLQEECEKFGSVKSVHIPRPSTTSEEENP-GVGFVFVAFDAVDSASKAAASLRARTFDGRKV 198 D L ++EEC+KFG V+ V IP+PS E +P GVG ++V FD+VD AS A L+ R+F+G+ V Sbjct: 271 DDILLDVREECQKFGPVEQVWIPKPSADGPENDPPGVGKIWVQFDSVDHASAARDVLKTRSFNGKLV 337
BLAST of mRNA_L-elsbetiae_contig16410.4360.1 vs. uniprot
Match: A0A2C5XCZ7_9PEZI (Splicing factor U2AF subunit n=2 Tax=Ceratocystis TaxID=5157 RepID=A0A2C5XCZ7_9PEZI) HSP 1 Score: 57.0 bits (136), Expect = 8.820e-8 Identity = 25/60 (41.67%), Postives = 40/60 (66.67%), Query Frame = 1 Query: 19 LQEECEKFGSVKSVHIPRPSTTSEEENPGVGFVFVAFDAVDSASKAAASLRARTFDGRKV 198 + EEC KFG++ + IPRP++ S +++PGVG ++V F+ ++A KA +L R F R V Sbjct: 518 VHEECSKFGTISELKIPRPTSGSSKQSPGVGKIYVKFETKEAAGKALRALAGRKFSDRTV 577
BLAST of mRNA_L-elsbetiae_contig16410.4360.1 vs. uniprot
Match: A0A6A6BU92_9PEZI (Splicing factor U2AF subunit n=1 Tax=Aplosporella prunicola CBS 121167 TaxID=1176127 RepID=A0A6A6BU92_9PEZI) HSP 1 Score: 56.6 bits (135), Expect = 1.200e-7 Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = 1 Query: 19 LQEECEKFGSVKSVHIPRPSTTSEEENPGVGFVFVAFDAVDSASKAAASLRARTFDGRKV 198 ++EEC+KFG V + IPRPS NPGVG ++V +D +SA KA +L R FD R V Sbjct: 466 VREECQKFGQVLDLKIPRPS--GSRTNPGVGKIYVKYDTPESAQKALRALAGRKFDDRTV 523
BLAST of mRNA_L-elsbetiae_contig16410.4360.1 vs. uniprot
Match: A0A0F4YUB3_TALEM (Splicing factor U2AF subunit n=1 Tax=Rasamsonia emersonii CBS 393.64 TaxID=1408163 RepID=A0A0F4YUB3_TALEM) HSP 1 Score: 56.2 bits (134), Expect = 1.640e-7 Identity = 28/60 (46.67%), Postives = 40/60 (66.67%), Query Frame = 1 Query: 19 LQEECEKFGSVKSVHIPRPSTTSEEENPGVGFVFVAFDAVDSASKAAASLRARTFDGRKV 198 +Q+EC K+G V + IPRP T ++PGVG ++V FD+V+SA+KA +L R F R V Sbjct: 476 VQDECNKYGQVLELKIPRP-TGGSRQSPGVGKIYVKFDSVESATKALKALAGRKFSDRTV 534
BLAST of mRNA_L-elsbetiae_contig16410.4360.1 vs. uniprot
Match: A0A061HM12_BLUGR (Splicing factor U2AF subunit (Fragment) n=1 Tax=Blumeria graminis f. sp. tritici 96224 TaxID=1268274 RepID=A0A061HM12_BLUGR) HSP 1 Score: 55.8 bits (133), Expect = 2.180e-7 Identity = 30/60 (50.00%), Postives = 39/60 (65.00%), Query Frame = 1 Query: 19 LQEECEKFGSVKSVHIPRPSTTSEEENPGVGFVFVAFDAVDSASKAAASLRARTFDGRKV 198 ++EECEKFG V + +PRP+ S + N GVG +FV FD +SA+KA SL R F R V Sbjct: 295 VKEECEKFGKVLDMKVPRPTGGSRQSN-GVGKIFVKFDTSESAAKALRSLAGRKFADRTV 353
BLAST of mRNA_L-elsbetiae_contig16410.4360.1 vs. uniprot
Match: A0A420I630_9PEZI (Splicing factor U2AF subunit n=3 Tax=Erysiphe TaxID=5121 RepID=A0A420I630_9PEZI) HSP 1 Score: 55.8 bits (133), Expect = 2.250e-7 Identity = 30/60 (50.00%), Postives = 38/60 (63.33%), Query Frame = 1 Query: 19 LQEECEKFGSVKSVHIPRPSTTSEEENPGVGFVFVAFDAVDSASKAAASLRARTFDGRKV 198 ++EECEK+G V + +PRP+ S + N GVG +FV FD DSA KA SL R F R V Sbjct: 502 VKEECEKYGKVLDMKVPRPTGGSRQSN-GVGKIFVRFDTPDSAGKALRSLAGRKFADRTV 560
BLAST of mRNA_L-elsbetiae_contig16410.4360.1 vs. uniprot
Match: N1J9F2_BLUG1 (Splicing factor U2AF subunit n=2 Tax=Blumeria hordei TaxID=2867405 RepID=N1J9F2_BLUG1) HSP 1 Score: 55.8 bits (133), Expect = 2.250e-7 Identity = 30/60 (50.00%), Postives = 39/60 (65.00%), Query Frame = 1 Query: 19 LQEECEKFGSVKSVHIPRPSTTSEEENPGVGFVFVAFDAVDSASKAAASLRARTFDGRKV 198 ++EECEKFG V + +PRP+ S + N GVG +FV FD +SA+KA SL R F R V Sbjct: 518 VKEECEKFGKVLDMKVPRPTGGSRQSN-GVGKIFVKFDTSESAAKALRSLAGRKFADRTV 576
BLAST of mRNA_L-elsbetiae_contig16410.4360.1 vs. uniprot
Match: B3MBN0_DROAN (Splicing factor U2AF subunit n=1 Tax=Drosophila ananassae TaxID=7217 RepID=B3MBN0_DROAN) HSP 1 Score: 55.1 bits (131), Expect = 4.150e-7 Identity = 27/60 (45.00%), Postives = 36/60 (60.00%), Query Frame = 1 Query: 19 LQEECEKFGSVKSVHIPRPSTTSEEENPGVGFVFVAFDAVDSASKAAASLRARTFDGRKV 198 +Q+EC K+G V+S+ IPRP + G G VFV F++VD KA +L R F GR V Sbjct: 359 IQQECAKYGDVRSLKIPRPIPKGDSPKRGCGKVFVQFESVDDCQKAMRALSGRKFSGRIV 418
BLAST of mRNA_L-elsbetiae_contig16410.4360.1 vs. uniprot
Match: A0A3D8SFA6_9HELO (Splicing factor U2AF subunit n=2 Tax=Coleophoma TaxID=453209 RepID=A0A3D8SFA6_9HELO) HSP 1 Score: 54.3 bits (129), Expect = 7.880e-7 Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = 1 Query: 19 LQEECEKFGSVKSVHIPRPSTTSEEENPGVGFVFVAFDAVDSASKAAASLRARTFDGRKV 198 ++EECEK+G V + +PRPS S + N GVG +FV FD +SA KA +L R F R V Sbjct: 516 VKEECEKYGKVLDMKVPRPSGGSRQSN-GVGKIFVKFDTPESAGKALRTLAGRKFADRTV 574 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16410.4360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig16410.4360.1 >prot_L-elsbetiae_contig16410.4360.1 ID=prot_L-elsbetiae_contig16410.4360.1|Name=mRNA_L-elsbetiae_contig16410.4360.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=71bp DVCFLRLQEECEKFGSVKSVHIPRPSTTSEEENPGVGFVFVAFDAVDSASback to top mRNA from alignment at L-elsbetiae_contig16410:3332..3544- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig16410.4360.1 ID=mRNA_L-elsbetiae_contig16410.4360.1|Name=mRNA_L-elsbetiae_contig16410.4360.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=213bp|location=Sequence derived from alignment at L-elsbetiae_contig16410:3332..3544- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig16410:3332..3544- >mRNA_L-elsbetiae_contig16410.4360.1 ID=mRNA_L-elsbetiae_contig16410.4360.1|Name=mRNA_L-elsbetiae_contig16410.4360.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=426bp|location=Sequence derived from alignment at L-elsbetiae_contig16410:3332..3544- (Laminarionema elsbetiae ELsaHSoW15)back to top |