prot_L-elsbetiae_contig16410.4360.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig16410.4360.1
Unique Nameprot_L-elsbetiae_contig16410.4360.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length71
Homology
BLAST of mRNA_L-elsbetiae_contig16410.4360.1 vs. uniprot
Match: D7FHF9_ECTSI (U2 small nuclear ribonucleoprotein auxiliary factor large subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHF9_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 1.430e-27
Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 0
Query:    8 QEECEKFGSVKSVHIPRPSTTSEEENPGVGFVFVAFDAVDSASKAAASLRARTFDGRKV 66
            +EECEKFGSVKSVHIPRPSTTSE E PGVG+VFVAFDAVDSASKAAASLRARTFDGRKV
Sbjct:  208 KEECEKFGSVKSVHIPRPSTTSEAEKPGVGYVFVAFDAVDSASKAAASLRARTFDGRKV 266          
BLAST of mRNA_L-elsbetiae_contig16410.4360.1 vs. uniprot
Match: A0A3P3YJC5_PLABS (RRM domain-containing protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YJC5_PLABS)

HSP 1 Score: 60.1 bits (144), Expect = 6.750e-9
Identity = 32/67 (47.76%), Postives = 45/67 (67.16%), Query Frame = 0
Query:    1 DVCFLRLQEECEKFGSVKSVHIPRPSTTSEEENP-GVGFVFVAFDAVDSASKAAASLRARTFDGRKV 66
            D   L ++EEC+KFG V+ V IP+PS    E +P GVG ++V FD+VD AS A   L+ R+F+G+ V
Sbjct:  271 DDILLDVREECQKFGPVEQVWIPKPSADGPENDPPGVGKIWVQFDSVDHASAARDVLKTRSFNGKLV 337          
BLAST of mRNA_L-elsbetiae_contig16410.4360.1 vs. uniprot
Match: A0A2C5XCZ7_9PEZI (Splicing factor U2AF subunit n=2 Tax=Ceratocystis TaxID=5157 RepID=A0A2C5XCZ7_9PEZI)

HSP 1 Score: 57.0 bits (136), Expect = 8.820e-8
Identity = 25/60 (41.67%), Postives = 40/60 (66.67%), Query Frame = 0
Query:    7 LQEECEKFGSVKSVHIPRPSTTSEEENPGVGFVFVAFDAVDSASKAAASLRARTFDGRKV 66
            + EEC KFG++  + IPRP++ S +++PGVG ++V F+  ++A KA  +L  R F  R V
Sbjct:  518 VHEECSKFGTISELKIPRPTSGSSKQSPGVGKIYVKFETKEAAGKALRALAGRKFSDRTV 577          
BLAST of mRNA_L-elsbetiae_contig16410.4360.1 vs. uniprot
Match: A0A6A6BU92_9PEZI (Splicing factor U2AF subunit n=1 Tax=Aplosporella prunicola CBS 121167 TaxID=1176127 RepID=A0A6A6BU92_9PEZI)

HSP 1 Score: 56.6 bits (135), Expect = 1.200e-7
Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = 0
Query:    7 LQEECEKFGSVKSVHIPRPSTTSEEENPGVGFVFVAFDAVDSASKAAASLRARTFDGRKV 66
            ++EEC+KFG V  + IPRPS      NPGVG ++V +D  +SA KA  +L  R FD R V
Sbjct:  466 VREECQKFGQVLDLKIPRPS--GSRTNPGVGKIYVKYDTPESAQKALRALAGRKFDDRTV 523          
BLAST of mRNA_L-elsbetiae_contig16410.4360.1 vs. uniprot
Match: A0A0F4YUB3_TALEM (Splicing factor U2AF subunit n=1 Tax=Rasamsonia emersonii CBS 393.64 TaxID=1408163 RepID=A0A0F4YUB3_TALEM)

HSP 1 Score: 56.2 bits (134), Expect = 1.640e-7
Identity = 28/60 (46.67%), Postives = 40/60 (66.67%), Query Frame = 0
Query:    7 LQEECEKFGSVKSVHIPRPSTTSEEENPGVGFVFVAFDAVDSASKAAASLRARTFDGRKV 66
            +Q+EC K+G V  + IPRP T    ++PGVG ++V FD+V+SA+KA  +L  R F  R V
Sbjct:  476 VQDECNKYGQVLELKIPRP-TGGSRQSPGVGKIYVKFDSVESATKALKALAGRKFSDRTV 534          
BLAST of mRNA_L-elsbetiae_contig16410.4360.1 vs. uniprot
Match: A0A061HM12_BLUGR (Splicing factor U2AF subunit (Fragment) n=1 Tax=Blumeria graminis f. sp. tritici 96224 TaxID=1268274 RepID=A0A061HM12_BLUGR)

HSP 1 Score: 55.8 bits (133), Expect = 2.180e-7
Identity = 30/60 (50.00%), Postives = 39/60 (65.00%), Query Frame = 0
Query:    7 LQEECEKFGSVKSVHIPRPSTTSEEENPGVGFVFVAFDAVDSASKAAASLRARTFDGRKV 66
            ++EECEKFG V  + +PRP+  S + N GVG +FV FD  +SA+KA  SL  R F  R V
Sbjct:  295 VKEECEKFGKVLDMKVPRPTGGSRQSN-GVGKIFVKFDTSESAAKALRSLAGRKFADRTV 353          
BLAST of mRNA_L-elsbetiae_contig16410.4360.1 vs. uniprot
Match: A0A420I630_9PEZI (Splicing factor U2AF subunit n=3 Tax=Erysiphe TaxID=5121 RepID=A0A420I630_9PEZI)

HSP 1 Score: 55.8 bits (133), Expect = 2.250e-7
Identity = 30/60 (50.00%), Postives = 38/60 (63.33%), Query Frame = 0
Query:    7 LQEECEKFGSVKSVHIPRPSTTSEEENPGVGFVFVAFDAVDSASKAAASLRARTFDGRKV 66
            ++EECEK+G V  + +PRP+  S + N GVG +FV FD  DSA KA  SL  R F  R V
Sbjct:  502 VKEECEKYGKVLDMKVPRPTGGSRQSN-GVGKIFVRFDTPDSAGKALRSLAGRKFADRTV 560          
BLAST of mRNA_L-elsbetiae_contig16410.4360.1 vs. uniprot
Match: N1J9F2_BLUG1 (Splicing factor U2AF subunit n=2 Tax=Blumeria hordei TaxID=2867405 RepID=N1J9F2_BLUG1)

HSP 1 Score: 55.8 bits (133), Expect = 2.250e-7
Identity = 30/60 (50.00%), Postives = 39/60 (65.00%), Query Frame = 0
Query:    7 LQEECEKFGSVKSVHIPRPSTTSEEENPGVGFVFVAFDAVDSASKAAASLRARTFDGRKV 66
            ++EECEKFG V  + +PRP+  S + N GVG +FV FD  +SA+KA  SL  R F  R V
Sbjct:  518 VKEECEKFGKVLDMKVPRPTGGSRQSN-GVGKIFVKFDTSESAAKALRSLAGRKFADRTV 576          
BLAST of mRNA_L-elsbetiae_contig16410.4360.1 vs. uniprot
Match: B3MBN0_DROAN (Splicing factor U2AF subunit n=1 Tax=Drosophila ananassae TaxID=7217 RepID=B3MBN0_DROAN)

HSP 1 Score: 55.1 bits (131), Expect = 4.150e-7
Identity = 27/60 (45.00%), Postives = 36/60 (60.00%), Query Frame = 0
Query:    7 LQEECEKFGSVKSVHIPRPSTTSEEENPGVGFVFVAFDAVDSASKAAASLRARTFDGRKV 66
            +Q+EC K+G V+S+ IPRP    +    G G VFV F++VD   KA  +L  R F GR V
Sbjct:  359 IQQECAKYGDVRSLKIPRPIPKGDSPKRGCGKVFVQFESVDDCQKAMRALSGRKFSGRIV 418          
BLAST of mRNA_L-elsbetiae_contig16410.4360.1 vs. uniprot
Match: A0A3D8SFA6_9HELO (Splicing factor U2AF subunit n=2 Tax=Coleophoma TaxID=453209 RepID=A0A3D8SFA6_9HELO)

HSP 1 Score: 54.3 bits (129), Expect = 7.880e-7
Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = 0
Query:    7 LQEECEKFGSVKSVHIPRPSTTSEEENPGVGFVFVAFDAVDSASKAAASLRARTFDGRKV 66
            ++EECEK+G V  + +PRPS  S + N GVG +FV FD  +SA KA  +L  R F  R V
Sbjct:  516 VKEECEKYGKVLDMKVPRPSGGSRQSN-GVGKIFVKFDTPESAGKALRTLAGRKFADRTV 574          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16410.4360.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHF9_ECTSI1.430e-2793.22U2 small nuclear ribonucleoprotein auxiliary facto... [more]
A0A3P3YJC5_PLABS6.750e-947.76RRM domain-containing protein n=2 Tax=Plasmodiopho... [more]
A0A2C5XCZ7_9PEZI8.820e-841.67Splicing factor U2AF subunit n=2 Tax=Ceratocystis ... [more]
A0A6A6BU92_9PEZI1.200e-748.33Splicing factor U2AF subunit n=1 Tax=Aplosporella ... [more]
A0A0F4YUB3_TALEM1.640e-746.67Splicing factor U2AF subunit n=1 Tax=Rasamsonia em... [more]
A0A061HM12_BLUGR2.180e-750.00Splicing factor U2AF subunit (Fragment) n=1 Tax=Bl... [more]
A0A420I630_9PEZI2.250e-750.00Splicing factor U2AF subunit n=3 Tax=Erysiphe TaxI... [more]
N1J9F2_BLUG12.250e-750.00Splicing factor U2AF subunit n=2 Tax=Blumeria hord... [more]
B3MBN0_DROAN4.150e-745.00Splicing factor U2AF subunit n=1 Tax=Drosophila an... [more]
A0A3D8SFA6_9HELO7.880e-748.33Splicing factor U2AF subunit n=2 Tax=Coleophoma Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 7..67
e-value: 6.9E-8
score: 32.2
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 1..67
score: 9.559
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 5..71
e-value: 3.7E-18
score: 67.3
NoneNo IPR availablePANTHERPTHR23139RNA-BINDING PROTEINcoord: 8..67
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 7..67

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16410contigL-elsbetiae_contig16410:3332..3544 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16410.4360.1mRNA_L-elsbetiae_contig16410.4360.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig16410 3332..3544 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig16410.4360.1 ID=prot_L-elsbetiae_contig16410.4360.1|Name=mRNA_L-elsbetiae_contig16410.4360.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=71bp
DVCFLRLQEECEKFGSVKSVHIPRPSTTSEEENPGVGFVFVAFDAVDSAS
KAAASLRARTFDGRKVRDSSY
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf