mRNA_L-elsbetiae_contig16410.4360.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16410.4360.1
Unique NamemRNA_L-elsbetiae_contig16410.4360.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig16410.4360.1 vs. uniprot
Match: D7FHF9_ECTSI (U2 small nuclear ribonucleoprotein auxiliary factor large subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHF9_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 1.430e-27
Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 1
Query:   22 QEECEKFGSVKSVHIPRPSTTSEEENPGVGFVFVAFDAVDSASKAAASLRARTFDGRKV 198
            +EECEKFGSVKSVHIPRPSTTSE E PGVG+VFVAFDAVDSASKAAASLRARTFDGRKV
Sbjct:  208 KEECEKFGSVKSVHIPRPSTTSEAEKPGVGYVFVAFDAVDSASKAAASLRARTFDGRKV 266          
BLAST of mRNA_L-elsbetiae_contig16410.4360.1 vs. uniprot
Match: A0A3P3YJC5_PLABS (RRM domain-containing protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YJC5_PLABS)

HSP 1 Score: 60.1 bits (144), Expect = 6.750e-9
Identity = 32/67 (47.76%), Postives = 45/67 (67.16%), Query Frame = 1
Query:    1 DVCFLRLQEECEKFGSVKSVHIPRPSTTSEEENP-GVGFVFVAFDAVDSASKAAASLRARTFDGRKV 198
            D   L ++EEC+KFG V+ V IP+PS    E +P GVG ++V FD+VD AS A   L+ R+F+G+ V
Sbjct:  271 DDILLDVREECQKFGPVEQVWIPKPSADGPENDPPGVGKIWVQFDSVDHASAARDVLKTRSFNGKLV 337          
BLAST of mRNA_L-elsbetiae_contig16410.4360.1 vs. uniprot
Match: A0A2C5XCZ7_9PEZI (Splicing factor U2AF subunit n=2 Tax=Ceratocystis TaxID=5157 RepID=A0A2C5XCZ7_9PEZI)

HSP 1 Score: 57.0 bits (136), Expect = 8.820e-8
Identity = 25/60 (41.67%), Postives = 40/60 (66.67%), Query Frame = 1
Query:   19 LQEECEKFGSVKSVHIPRPSTTSEEENPGVGFVFVAFDAVDSASKAAASLRARTFDGRKV 198
            + EEC KFG++  + IPRP++ S +++PGVG ++V F+  ++A KA  +L  R F  R V
Sbjct:  518 VHEECSKFGTISELKIPRPTSGSSKQSPGVGKIYVKFETKEAAGKALRALAGRKFSDRTV 577          
BLAST of mRNA_L-elsbetiae_contig16410.4360.1 vs. uniprot
Match: A0A6A6BU92_9PEZI (Splicing factor U2AF subunit n=1 Tax=Aplosporella prunicola CBS 121167 TaxID=1176127 RepID=A0A6A6BU92_9PEZI)

HSP 1 Score: 56.6 bits (135), Expect = 1.200e-7
Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = 1
Query:   19 LQEECEKFGSVKSVHIPRPSTTSEEENPGVGFVFVAFDAVDSASKAAASLRARTFDGRKV 198
            ++EEC+KFG V  + IPRPS      NPGVG ++V +D  +SA KA  +L  R FD R V
Sbjct:  466 VREECQKFGQVLDLKIPRPS--GSRTNPGVGKIYVKYDTPESAQKALRALAGRKFDDRTV 523          
BLAST of mRNA_L-elsbetiae_contig16410.4360.1 vs. uniprot
Match: A0A0F4YUB3_TALEM (Splicing factor U2AF subunit n=1 Tax=Rasamsonia emersonii CBS 393.64 TaxID=1408163 RepID=A0A0F4YUB3_TALEM)

HSP 1 Score: 56.2 bits (134), Expect = 1.640e-7
Identity = 28/60 (46.67%), Postives = 40/60 (66.67%), Query Frame = 1
Query:   19 LQEECEKFGSVKSVHIPRPSTTSEEENPGVGFVFVAFDAVDSASKAAASLRARTFDGRKV 198
            +Q+EC K+G V  + IPRP T    ++PGVG ++V FD+V+SA+KA  +L  R F  R V
Sbjct:  476 VQDECNKYGQVLELKIPRP-TGGSRQSPGVGKIYVKFDSVESATKALKALAGRKFSDRTV 534          
BLAST of mRNA_L-elsbetiae_contig16410.4360.1 vs. uniprot
Match: A0A061HM12_BLUGR (Splicing factor U2AF subunit (Fragment) n=1 Tax=Blumeria graminis f. sp. tritici 96224 TaxID=1268274 RepID=A0A061HM12_BLUGR)

HSP 1 Score: 55.8 bits (133), Expect = 2.180e-7
Identity = 30/60 (50.00%), Postives = 39/60 (65.00%), Query Frame = 1
Query:   19 LQEECEKFGSVKSVHIPRPSTTSEEENPGVGFVFVAFDAVDSASKAAASLRARTFDGRKV 198
            ++EECEKFG V  + +PRP+  S + N GVG +FV FD  +SA+KA  SL  R F  R V
Sbjct:  295 VKEECEKFGKVLDMKVPRPTGGSRQSN-GVGKIFVKFDTSESAAKALRSLAGRKFADRTV 353          
BLAST of mRNA_L-elsbetiae_contig16410.4360.1 vs. uniprot
Match: A0A420I630_9PEZI (Splicing factor U2AF subunit n=3 Tax=Erysiphe TaxID=5121 RepID=A0A420I630_9PEZI)

HSP 1 Score: 55.8 bits (133), Expect = 2.250e-7
Identity = 30/60 (50.00%), Postives = 38/60 (63.33%), Query Frame = 1
Query:   19 LQEECEKFGSVKSVHIPRPSTTSEEENPGVGFVFVAFDAVDSASKAAASLRARTFDGRKV 198
            ++EECEK+G V  + +PRP+  S + N GVG +FV FD  DSA KA  SL  R F  R V
Sbjct:  502 VKEECEKYGKVLDMKVPRPTGGSRQSN-GVGKIFVRFDTPDSAGKALRSLAGRKFADRTV 560          
BLAST of mRNA_L-elsbetiae_contig16410.4360.1 vs. uniprot
Match: N1J9F2_BLUG1 (Splicing factor U2AF subunit n=2 Tax=Blumeria hordei TaxID=2867405 RepID=N1J9F2_BLUG1)

HSP 1 Score: 55.8 bits (133), Expect = 2.250e-7
Identity = 30/60 (50.00%), Postives = 39/60 (65.00%), Query Frame = 1
Query:   19 LQEECEKFGSVKSVHIPRPSTTSEEENPGVGFVFVAFDAVDSASKAAASLRARTFDGRKV 198
            ++EECEKFG V  + +PRP+  S + N GVG +FV FD  +SA+KA  SL  R F  R V
Sbjct:  518 VKEECEKFGKVLDMKVPRPTGGSRQSN-GVGKIFVKFDTSESAAKALRSLAGRKFADRTV 576          
BLAST of mRNA_L-elsbetiae_contig16410.4360.1 vs. uniprot
Match: B3MBN0_DROAN (Splicing factor U2AF subunit n=1 Tax=Drosophila ananassae TaxID=7217 RepID=B3MBN0_DROAN)

HSP 1 Score: 55.1 bits (131), Expect = 4.150e-7
Identity = 27/60 (45.00%), Postives = 36/60 (60.00%), Query Frame = 1
Query:   19 LQEECEKFGSVKSVHIPRPSTTSEEENPGVGFVFVAFDAVDSASKAAASLRARTFDGRKV 198
            +Q+EC K+G V+S+ IPRP    +    G G VFV F++VD   KA  +L  R F GR V
Sbjct:  359 IQQECAKYGDVRSLKIPRPIPKGDSPKRGCGKVFVQFESVDDCQKAMRALSGRKFSGRIV 418          
BLAST of mRNA_L-elsbetiae_contig16410.4360.1 vs. uniprot
Match: A0A3D8SFA6_9HELO (Splicing factor U2AF subunit n=2 Tax=Coleophoma TaxID=453209 RepID=A0A3D8SFA6_9HELO)

HSP 1 Score: 54.3 bits (129), Expect = 7.880e-7
Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = 1
Query:   19 LQEECEKFGSVKSVHIPRPSTTSEEENPGVGFVFVAFDAVDSASKAAASLRARTFDGRKV 198
            ++EECEK+G V  + +PRPS  S + N GVG +FV FD  +SA KA  +L  R F  R V
Sbjct:  516 VKEECEKYGKVLDMKVPRPSGGSRQSN-GVGKIFVKFDTPESAGKALRTLAGRKFADRTV 574          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16410.4360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHF9_ECTSI1.430e-2793.22U2 small nuclear ribonucleoprotein auxiliary facto... [more]
A0A3P3YJC5_PLABS6.750e-947.76RRM domain-containing protein n=2 Tax=Plasmodiopho... [more]
A0A2C5XCZ7_9PEZI8.820e-841.67Splicing factor U2AF subunit n=2 Tax=Ceratocystis ... [more]
A0A6A6BU92_9PEZI1.200e-748.33Splicing factor U2AF subunit n=1 Tax=Aplosporella ... [more]
A0A0F4YUB3_TALEM1.640e-746.67Splicing factor U2AF subunit n=1 Tax=Rasamsonia em... [more]
A0A061HM12_BLUGR2.180e-750.00Splicing factor U2AF subunit (Fragment) n=1 Tax=Bl... [more]
A0A420I630_9PEZI2.250e-750.00Splicing factor U2AF subunit n=3 Tax=Erysiphe TaxI... [more]
N1J9F2_BLUG12.250e-750.00Splicing factor U2AF subunit n=2 Tax=Blumeria hord... [more]
B3MBN0_DROAN4.150e-745.00Splicing factor U2AF subunit n=1 Tax=Drosophila an... [more]
A0A3D8SFA6_9HELO7.880e-748.33Splicing factor U2AF subunit n=2 Tax=Coleophoma Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16410contigL-elsbetiae_contig16410:3332..3544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue1.4e-22
Seed eggNOG ortholog2880.D7FHF9
KEGG koko:K12818,ko:K12837,ko:K16487
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
EggNOG free text desc.pre-mRNA 3'-splice site binding
EggNOG OGsKOG0120@1,KOG0120@2759
EC3.6.4.13
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036,ko03041
Exons1
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815678.5031319-CDS-L-elsbetiae_contig16410:3331..35441622815678.5031319-CDS-L-elsbetiae_contig16410:3331..3544Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16410 3332..3544 -
1691683032.5760217-CDS-L-elsbetiae_contig16410:3331..35441691683032.5760217-CDS-L-elsbetiae_contig16410:3331..3544Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16410 3332..3544 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16410.4360.1prot_L-elsbetiae_contig16410.4360.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16410 3332..3544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16410.4360.1

>prot_L-elsbetiae_contig16410.4360.1 ID=prot_L-elsbetiae_contig16410.4360.1|Name=mRNA_L-elsbetiae_contig16410.4360.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=71bp
DVCFLRLQEECEKFGSVKSVHIPRPSTTSEEENPGVGFVFVAFDAVDSAS
KAAASLRARTFDGRKVRDSSY
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mRNA from alignment at L-elsbetiae_contig16410:3332..3544-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16410.4360.1 ID=mRNA_L-elsbetiae_contig16410.4360.1|Name=mRNA_L-elsbetiae_contig16410.4360.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=213bp|location=Sequence derived from alignment at L-elsbetiae_contig16410:3332..3544- (Laminarionema elsbetiae ELsaHSoW15)
GATGTGTGTTTCCTCCGCTTGCAGGAAGAGTGCGAGAAGTTCGGATCCGT CAAGTCTGTCCACATCCCTCGGCCCAGCACGACCAGCGAAGAGGAGAATC CCGGCGTCGGTTTCGTGTTCGTGGCGTTTGATGCCGTAGACTCGGCATCC AAGGCCGCGGCTAGCCTCAGGGCAAGGACTTTCGATGGGCGCAAGGTGCG TGACTCATCTTAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16410:3332..3544-

>mRNA_L-elsbetiae_contig16410.4360.1 ID=mRNA_L-elsbetiae_contig16410.4360.1|Name=mRNA_L-elsbetiae_contig16410.4360.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=426bp|location=Sequence derived from alignment at L-elsbetiae_contig16410:3332..3544- (Laminarionema elsbetiae ELsaHSoW15)
GATGTGTGTTTCCTCCGCTTGCAGGAAGAGTGCGAGAAGTTCGGATCCGT
CAAGTCTGTCCACATCCCTCGGCCCAGCACGACCAGCGAAGAGGAGAATC
CCGGCGTCGGTTTCGTGTTCGTGGCGTTTGATGCCGTAGACTCGGCATCC
AAGGCCGCGGCTAGCCTCAGGGCAAGGACTTTCGATGGGCGCAAGGTGCG
TGACTCATCTTACGATGTGTGTTTCCTCCGCTTGCAGGAAGAGTGCGAGA
AGTTCGGATCCGTCAAGTCTGTCCACATCCCTCGGCCCAGCACGACCAGC
GAAGAGGAGAATCCCGGCGTCGGTTTCGTGTTCGTGGCGTTTGATGCCGT
AGACTCGGCATCCAAGGCCGCGGCTAGCCTCAGGGCAAGGACTTTCGATG
GGCGCAAGGTGCGTGACTCATCTTAC
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