mRNA_L-elsbetiae_contig13654.2779.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig13654.2779.1 vs. uniprot
Match: D8LQB9_ECTSI (DNA polymerase epsilon catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB9_ECTSI) HSP 1 Score: 198 bits (503), Expect = 1.200e-56 Identity = 107/110 (97.27%), Postives = 109/110 (99.09%), Query Frame = 1 Query: 4 QVLVTTWLDEVTHMGNAHADSLLVHFYRWICARQSLLHNAALHRLVXXXXXXXFSRLIAELRRLGACVVFASFQKVIIATNKSDVKAARDYAKFVVSTVTSRDLFNTLQV 333 +VLVTTWLDEVTHMGNAHADSLLVHFYRWICARQSLLHNA LHRLVXXXXXXXFSRLIAELRRLGACVVFASFQKVIIATNKSDVKAARDYAKFVVSTVTSRDLFNTLQ+ Sbjct: 410 KVLVTTWLDEVTHMGNAHADSLLVHFYRWICARQSLLHNATLHRLVXXXXXXXFSRLIAELRRLGACVVFASFQKVIIATNKSDVKAARDYAKFVVSTVTSRDLFNTLQL 519
BLAST of mRNA_L-elsbetiae_contig13654.2779.1 vs. uniprot
Match: A0A6H5J9K7_9PHAE (DNA polymerase epsilon catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9K7_9PHAE) HSP 1 Score: 194 bits (494), Expect = 2.390e-55 Identity = 98/110 (89.09%), Postives = 101/110 (91.82%), Query Frame = 1 Query: 4 QVLVTTWLDEVTHMGNAHADSLLVHFYRWICARQSLLHNAALHRLVXXXXXXXFSRLIAELRRLGACVVFASFQKVIIATNKSDVKAARDYAKFVVSTVTSRDLFNTLQV 333 +VLVTTWLDEVTHMGNAHADSLLVHFYRWICARQSLLHNA LH LV FSRLIAELRRLGACVVFASFQKVIIATNKSDVKAARDYAKFV+STVTSRDLFNTLQ+ Sbjct: 986 KVLVTTWLDEVTHMGNAHADSLLVHFYRWICARQSLLHNATLHCLVHRLMHKVFSRLIAELRRLGACVVFASFQKVIIATNKSDVKAARDYAKFVISTVTSRDLFNTLQL 1095
BLAST of mRNA_L-elsbetiae_contig13654.2779.1 vs. uniprot
Match: A0A7R9U2H8_9STRA (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2H8_9STRA) HSP 1 Score: 118 bits (295), Expect = 1.860e-30 Identity = 55/110 (50.00%), Postives = 82/110 (74.55%), Query Frame = 1 Query: 4 QVLVTTWLDEVTHMGNAHADSLLVHFYRWICARQSLLHNAALHRLVXXXXXXXFSRLIAELRRLGACVVFASFQKVIIATNKSDVKAARDYAKFVVSTVTSRDLFNTLQV 333 ++LV+ WL E + GN AD++L+HFYRW+CA +S L++ ALH++V F RL+AELRRLGA VV+ASF +++IAT K+DV +A++Y FVV T+T+ +F+ LQ+ Sbjct: 106 RLLVSQWLAEASMNGNEIADAMLMHFYRWLCAAESKLYDPALHQMVHQLMTKVFLRLVAELRRLGAHVVYASFNRILIATQKTDVASAQEYVSFVVETITAMPVFSILQL 215
BLAST of mRNA_L-elsbetiae_contig13654.2779.1 vs. uniprot
Match: A0A7S2MG59_9STRA (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MG59_9STRA) HSP 1 Score: 113 bits (283), Expect = 3.240e-28 Identity = 57/117 (48.72%), Postives = 81/117 (69.23%), Query Frame = 1 Query: 4 QVLVTTWLDEVTHMGNAH-----ADSLLVHFYRWICARQSLLHNAALHRLVXXXXXXXFSRLIAELRRLGACVVFASFQ--KVIIATNKSDVKAARDYAKFVVSTVTSRDLFNTLQV 333 + LV WL+E+T G+ AD LLVHFYRW+C+R+SLL++ AL R+V F RL++E+RRLGA VVFA+ Q +++I TNK+D KAARDY F++ T+TS D+F + + Sbjct: 152 KTLVNQWLNEMTRKGSTKDSREVADDLLVHFYRWLCSRESLLYDPALKRVVCMLMKKIFLRLVSEIRRLGAEVVFANPQGGRIVIMTNKTDPKAARDYVNFIIETITSHDVFTHMAI 268
BLAST of mRNA_L-elsbetiae_contig13654.2779.1 vs. uniprot
Match: W7TVX1_9STRA (DNA-directed DNA polymerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVX1_9STRA) HSP 1 Score: 111 bits (277), Expect = 4.320e-26 Identity = 53/110 (48.18%), Postives = 77/110 (70.00%), Query Frame = 1 Query: 4 QVLVTTWLDEVTHMGNAHADSLLVHFYRWICARQSLLHNAALHRLVXXXXXXXFSRLIAELRRLGACVVFASFQKVIIATNKSDVKAARDYAKFVVSTVTSRDLFNTLQV 333 +VLV TW+ EV +G+ AD+L +F+RW+C SL ++ AL RL F RL+AE+RRLGA V+FA+ Q+++IATNK D+ +A +YA FV+ TV SR +F+ LQ+ Sbjct: 1842 RVLVETWMGEVERVGSLQADALATNFWRWMCDADSLFYDPALRRLCLMLINKYFHRLVAEMRRLGAQVIFANAQRIMIATNKEDMASAHEYASFVLRTVLSRRIFSRLQI 1951
BLAST of mRNA_L-elsbetiae_contig13654.2779.1 vs. uniprot
Match: A0A2G9GVA6_9LAMI (DNA polymerase epsilon catalytic subunit n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9GVA6_9LAMI) HSP 1 Score: 107 bits (266), Expect = 1.280e-24 Identity = 53/108 (49.07%), Postives = 75/108 (69.44%), Query Frame = 1 Query: 10 LVTTWLDEVTHMGNAHADSLLVHFYRWICARQSLLHNAALHRLVXXXXXXXFSRLIAELRRLGACVVFASFQKVIIATNKSDVKAARDYAKFVVSTVTSRDLFNTLQV 333 L+ L +V GN AD++L H YRWIC+ +S LH+ ALHR++ F+ LIAELR+LGA +VFASF KVII T KSD+ AA+ Y + V+ T+ +RDLF+ +++ Sbjct: 624 LIQRCLADVITSGNVFADTILQHLYRWICSPKSKLHDPALHRMLHKVMQKIFALLIAELRKLGATIVFASFGKVIIDTGKSDISAAKAYCESVLKTLHTRDLFDLIEL 731
BLAST of mRNA_L-elsbetiae_contig13654.2779.1 vs. uniprot
Match: A0A8M8V0N1_SESIN (DNA polymerase epsilon catalytic subunit A n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A8M8V0N1_SESIN) HSP 1 Score: 104 bits (260), Expect = 8.460e-24 Identity = 53/111 (47.75%), Postives = 77/111 (69.37%), Query Frame = 1 Query: 1 KQVLVTTWLDEVTHMGNAHADSLLVHFYRWICARQSLLHNAALHRLVXXXXXXXFSRLIAELRRLGACVVFASFQKVIIATNKSDVKAARDYAKFVVSTVTSRDLFNTLQV 333 KQ++ D VT GN AD++L H YRW+C+ +S LH+ ALHR++ F+ L+AELR+LGA +VF+SF++VII T KSD+ AA+ Y + VV T+ SRDLF +++ Sbjct: 1761 KQLIQRCLADAVTS-GNVFADAILQHLYRWLCSPRSKLHDPALHRMLHKVMQKVFALLMAELRKLGATIVFSSFRRVIIDTGKSDLPAAKAYCESVVKTLQSRDLFEWIEL 1870
BLAST of mRNA_L-elsbetiae_contig13654.2779.1 vs. uniprot
Match: A0A2I0JBN5_PUNGR (DNA polymerase epsilon catalytic subunit n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0JBN5_PUNGR) HSP 1 Score: 104 bits (259), Expect = 1.130e-23 Identity = 52/111 (46.85%), Postives = 76/111 (68.47%), Query Frame = 1 Query: 1 KQVLVTTWLDEVTHMGNAHADSLLVHFYRWICARQSLLHNAALHRLVXXXXXXXFSRLIAELRRLGACVVFASFQKVIIATNKSDVKAARDYAKFVVSTVTSRDLFNTLQV 333 KQ++ D VT GN +AD+LL H YRW+C+ +S LH+ ALHR++ F+ L+AELR+LGA ++FA+F KVII T K D+ AAR Y+ +V T+ +RDLF +++ Sbjct: 687 KQLIQRCLADAVTS-GNIYADALLQHLYRWLCSPKSKLHDPALHRMLHKVMQKVFALLLAELRKLGASIIFANFSKVIIDTGKYDISAARAYSDSLVKTLQNRDLFEWIEL 796
BLAST of mRNA_L-elsbetiae_contig13654.2779.1 vs. uniprot
Match: A0A218WMH4_PUNGR (DNA polymerase epsilon catalytic subunit n=1 Tax=Punica granatum TaxID=22663 RepID=A0A218WMH4_PUNGR) HSP 1 Score: 104 bits (259), Expect = 1.150e-23 Identity = 52/111 (46.85%), Postives = 76/111 (68.47%), Query Frame = 1 Query: 1 KQVLVTTWLDEVTHMGNAHADSLLVHFYRWICARQSLLHNAALHRLVXXXXXXXFSRLIAELRRLGACVVFASFQKVIIATNKSDVKAARDYAKFVVSTVTSRDLFNTLQV 333 KQ++ D VT GN +AD+LL H YRW+C+ +S LH+ ALHR++ F+ L+AELR+LGA ++FA+F KVII T K D+ AAR Y+ +V T+ +RDLF +++ Sbjct: 1717 KQLIQRCLADAVTS-GNIYADALLQHLYRWLCSPKSKLHDPALHRMLHKVMQKVFALLLAELRKLGASIIFANFSKVIIDTGKYDISAARAYSDSLVKTLQNRDLFEWIEL 1826
BLAST of mRNA_L-elsbetiae_contig13654.2779.1 vs. uniprot
Match: A0A6P8CK98_PUNGR (DNA polymerase epsilon catalytic subunit n=1 Tax=Punica granatum TaxID=22663 RepID=A0A6P8CK98_PUNGR) HSP 1 Score: 104 bits (259), Expect = 1.150e-23 Identity = 52/111 (46.85%), Postives = 76/111 (68.47%), Query Frame = 1 Query: 1 KQVLVTTWLDEVTHMGNAHADSLLVHFYRWICARQSLLHNAALHRLVXXXXXXXFSRLIAELRRLGACVVFASFQKVIIATNKSDVKAARDYAKFVVSTVTSRDLFNTLQV 333 KQ++ D VT GN +AD+LL H YRW+C+ +S LH+ ALHR++ F+ L+AELR+LGA ++FA+F KVII T K D+ AAR Y+ +V T+ +RDLF +++ Sbjct: 1772 KQLIQRCLADAVTS-GNIYADALLQHLYRWLCSPKSKLHDPALHRMLHKVMQKVFALLLAELRKLGASIIFANFSKVIIDTGKYDISAARAYSDSLVKTLQNRDLFEWIEL 1881 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13654.2779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig13654.2779.1 >prot_L-elsbetiae_contig13654.2779.1 ID=prot_L-elsbetiae_contig13654.2779.1|Name=mRNA_L-elsbetiae_contig13654.2779.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp KQVLVTTWLDEVTHMGNAHADSLLVHFYRWICARQSLLHNAALHRLVHRLback to top mRNA from alignment at L-elsbetiae_contig13654:3312..4388+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig13654.2779.1 ID=mRNA_L-elsbetiae_contig13654.2779.1|Name=mRNA_L-elsbetiae_contig13654.2779.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1077bp|location=Sequence derived from alignment at L-elsbetiae_contig13654:3312..4388+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig13654:3312..4388+ >mRNA_L-elsbetiae_contig13654.2779.1 ID=mRNA_L-elsbetiae_contig13654.2779.1|Name=mRNA_L-elsbetiae_contig13654.2779.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig13654:3312..4388+ (Laminarionema elsbetiae ELsaHSoW15)back to top |