mRNA_L-elsbetiae_contig1271.2177.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1271.2177.1
Unique NamemRNA_L-elsbetiae_contig1271.2177.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1271.2177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1271contigL-elsbetiae_contig1271:13970..18746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.3
Seed ortholog evalue2.8e-20
Seed eggNOG ortholog2880.D7FUG3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.SnoaL-like domain
EggNOG OGs2S0Y2@2759,COG4875@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionPDZ domain
Ec32 orthologEc-03_000310.1
Exons5
Model size996
Cds size993
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1271.2177.1prot_L-elsbetiae_contig1271.2177.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1271 13970..18744 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815460.2030604-CDS-L-elsbetiae_contig1271:13969..140471622815460.2030604-CDS-L-elsbetiae_contig1271:13969..14047Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1271 13970..14047 +
1691682908.3964317-CDS-L-elsbetiae_contig1271:13969..140471691682908.3964317-CDS-L-elsbetiae_contig1271:13969..14047Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1271 13970..14047 +
1622815460.2177017-CDS-L-elsbetiae_contig1271:14740..148871622815460.2177017-CDS-L-elsbetiae_contig1271:14740..14887Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1271 14741..14887 +
1691682908.4088652-CDS-L-elsbetiae_contig1271:14740..148871691682908.4088652-CDS-L-elsbetiae_contig1271:14740..14887Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1271 14741..14887 +
1622815460.2295842-CDS-L-elsbetiae_contig1271:15830..159661622815460.2295842-CDS-L-elsbetiae_contig1271:15830..15966Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1271 15831..15966 +
1691682908.4176662-CDS-L-elsbetiae_contig1271:15830..159661691682908.4176662-CDS-L-elsbetiae_contig1271:15830..15966Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1271 15831..15966 +
1622815460.239824-CDS-L-elsbetiae_contig1271:17106..176691622815460.239824-CDS-L-elsbetiae_contig1271:17106..17669Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1271 17107..17669 +
1691682908.4272537-CDS-L-elsbetiae_contig1271:17106..176691691682908.4272537-CDS-L-elsbetiae_contig1271:17106..17669Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1271 17107..17669 +
1622815460.2526624-CDS-L-elsbetiae_contig1271:18675..187441622815460.2526624-CDS-L-elsbetiae_contig1271:18675..18744Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1271 18676..18744 +
1691682908.4368534-CDS-L-elsbetiae_contig1271:18675..187441691682908.4368534-CDS-L-elsbetiae_contig1271:18675..18744Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1271 18676..18744 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1271.2177.1

>prot_L-elsbetiae_contig1271.2177.1 ID=prot_L-elsbetiae_contig1271.2177.1|Name=mRNA_L-elsbetiae_contig1271.2177.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=331bp
EGKAGAGTQPVCGLGASTTASLEPHPRKANTHEVTVTPKVGASGLGLILG
KEKEGAGWVVEGFRPMPGGERNPAKAAGIEAGDTLRQVDEVRLGSLSYED
GVELLERRKGDVVLTAVRPNAPLGPSSPSPNGDHTPAPFHAEEDRSPRRS
SDRSSRRSSRHSPGRSSAAANRSASRSPDRSSRRSSRHSPGRSSTAAANR
SASRSPDRSLRRFLMDDASGGGLPPSYPEAKLISELENRAKRIAELEERV
ESALSAAAERATQSAVFEEQARKEKSLAGARAKQIAELLEARVESASSLS
LAADRAKQGAAGSAPTRGSKGPGPAARPPSA
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mRNA from alignment at L-elsbetiae_contig1271:13970..18746+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1271.2177.1 ID=mRNA_L-elsbetiae_contig1271.2177.1|Name=mRNA_L-elsbetiae_contig1271.2177.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4777bp|location=Sequence derived from alignment at L-elsbetiae_contig1271:13970..18746+ (Laminarionema elsbetiae ELsaHSoW15)
GAGGGCAAAGCCGGCGCAGGTACTCAGCCCGTCTGCGGGCTTGGTGCCTC
AACGACGGCAAGCCTCGAACCCCACCCGGTGAGGATACTACTTTGTTCTG
TTGTGCTTGTTTGGGTAATCTCTAGGTGCGCGAACGGTCACCCGCCAACC
TTTAAGCTTGGTCAAGTACGAACGGATGCTCTTATTTGTTTGGAAGAGTT
GTGCCTTACTTATGGTGGCACGTGCGTGGGAATATATTCCGGGATATGCA
CGTCGGTATGTTGGTTGGATCTAGAGCGTGCTCTAATTTTTCTTTGAAAG
GGGGTGCAAAAATTTTGCCAAGTGTCGAGACTGGGCGGAGATTGATTTGA
GGGCAGATCTTCCCCTCGTCTTGAAAACAGAACAAAAAGGGAGAATCAAC
GATATCTGTTTTATTGTTGCTTTGCTGGCCCTTCGGGTCCATCTTATTTT
TCGTGTACCTTTTCTTGGGTATAAGTTAGCCTGTGACCACGGGAATTGAC
CGCATCAAGTGTTGGAGTAGTACGGACACTGAGAGGTACGGGATGGAGAG
ATCGGAACGGTTTTTAATGTGAAGACAACATACAACAACGAGCGGACGGG
AAGTAAAAACAAAACAAAAAAAATGACCCACTCACCCACCCACCCCACCT
CCTTCCTCCTCGCCCGGCGCTCCAATACCGCCCCTTTTCTGCTGCTCTTG
CTGCCGCTGCGACCCCTCTCCTGTTGCCACCGCTGCTCGCCCCTGCTGTT
CCGCGGGTTTCCGCTTTGTAGCGGAAGGCTAACACCCACGAGGTTACGGT
TACGCCGAAGGTCGGGGCCAGCGGGCTGGGGCTGATCCTCGGGAAGGAGA
AGGAGGGTGCCGGTTGGGTTGTCGAGGGCTTCCGGCCCATGCCGGGCGGA
GAGCGGAACCCTGCGAAGGTGACACAAGCGCTTTGGGTACCTAGCTGGTA
CGGGTGTTCCGTAGATTCGACGGTTTGTTGGGGGGGTATGTAGGTGCCGG
TCCATGCCGGGTGGAGAGCGGAACCCTTCGAAGGTGACACAAGCGCGCCT
CTGGTACCTGGCTGGTACGGGGGTTCCGTGGATTCGACGGTTTGTGTGGG
GGGGGTATGCAGGTGGGTTCGGGCGCACGGGGGCTGGACCGAAGTTGGCG
GCGATCGCTCGGCTTTGTTTCTCCTGAAAGGGGTATCTACATGTGTAATG
TTGACCTGTGCCTTTCTTTTTGCGTGCGTGTTTCCTCGGGGTGGTGTCAT
GCTTTCTACCGTAGGCGACACAAGATACCACACCCCCTGGATCGAATTTT
AGAGCTCGATTACTCCGTAGCGAAGAAGGTGCCAGCTCCAAACAACATAT
TTTCGGACAGCCCTCGGCTAGATCTTTCCAACGCCACCCCTTTCGGCACT
GTCATTCTTCTCGCTGGGGAGGAATCGAGCTTTGAAAATCTGTCCAGGGG
GTGTGGTATCTTGTGTCACCTACGGTAGTCTCATCGGCTCCCTCAGTTTC
TGTGCTCTCCCTCGTCATTGTCGTTGTCGTTGTCGTTGGTGCTGGTGATG
TTGTCGCAGCTGTTTCCGCCCCCGTGTGGATGCATGCATGCATGCATCCA
TGCATGTGTATGCCTGCGCGCACACACACGCATTCAGCGAACAGGAAAGA
TGCAAAGAACTTTGAGAACGGATTCGACCCAGGATGCCCAACATGTTGTC
TTAAGGCCCTCCCTGCTTGTTCTAATCGTAATTTCGTAGTTCCGTGCTGC
CGTAATGCTCTCACGAAACGAATGCAGGCACGCCAGCCGGGCTAATTCGA
CCACTCTAAAAGCACTCGACACGTTTTCCCCCTTTTCCTGCTTGCTCTCT
TGCCTCGAAAGGCGGCCGGGATCGAGGCAGGGGACACTCTACGCCAGGTG
GACGAAGTGCGACTGGGCTCTTTGTCGTACGAAGACGGCGTGGAGTTGCT
AGAGAGGCGAAAGGGCGACGTTGTCCTCACCGCCGTTCGCCCAAACGGTA
AGCGTTGCAACTGCCGTCATTGAAGTATGCAGTCAAAGTGCATCGTACGG
GATCTGTGGGTGCCGTACTTGAGTGTAGACATCACAGAAGAACAGGCTAC
AAGCGACACTTGCCATTTTTATTTTATTTATTTTTTTAATTTCTTTATTT
TTTTATTCTTCACAATTATTGTCAGTGCTCGACGGGCTCCTTGCCACGAG
GGGGGGCATCTTGCCAAGAGTACTAAACCGTGGTCACCCACAGAAGGGTT
CCTCTCCCCGAGCCCCCCACTCCCACCTTATGCGGTGCTTGCCTTATACT
AGTATATATTTGTTTTTTCACAGAAGAACGAGGTTATGTAGCGACACTTT
GCTGTTGCCAGCATACAATTTTACGCAGGGCTTTGGAAAGCGTGAAGGAC
TGCATACAGCAGACGCGTTTTTTCATTCTGTTCCTTATTAAGAGTACGGT
ACGACTGAGCGGGGGGTAAACGGCCACCGCTCGGGCTTCACAGCGCTTGC
CTCAGACCCGCGAGGGACCGACCGGTGTCGGACGAAAATGCGCCCATCAG
AGGGTGTTTTCTGCTGGATGTGAGGCATGTTTTAGCCCTTCCCACCCGGG
GTACCAAGATAGGATGTTGGATGTTGTCCAGTTTCTGTTTTTACCTCACG
TGGCGTGTAGAGGGGGAGCGAAGGGCTCCAGACTATCTGCTGTGTCGTTT
CTTTTGTTTTTATGCTTTGCTGACCCTTCGGGCCCACCTTTTTATTGTTC
AGTATAGTAATATACCCTTTCTTAGGGTGAGTTAGCCTGTGACCACAGGA
ATCGACCGCGTCGAGTGTTTGATTAGTACGGACGTAAGGAGGTGCTGGTT
GGAGAGATCGGAGCGGTTTTTAATGTGAAGATAACATCAACAACCCTTCC
ATCGCCTCTCGCCGGACGACGTCAGCGCGTTTGCACGGTTTGTTTCCAGT
AGCGAAAAAATAGAGAGATTCGCTTTGGAGGGAAAACGACCCACCAACCC
TCCCGCATGTGTCCTGGCCGACGTGTGATCACCTACATACCTATGTACCT
GCCTTCATCGTCGTGACCCTTTTTTGGTTTCACCGACTACCCCATGCGTT
CCGTCTCGCAACCTTCATGTCTCTTTACTCTTACCAGCGCCCCTCGGCCC
CTCATCCCCATCCCCGAATGGTGACCACACGCCGGCGCCGTTCCATGCGG
AAGAGGACCGTTCCCCGCGCCGTTCGTCGGATCGTTCCTCGCGCCGTTCC
TCGAGACATTCTCCGGGCCGTTCCTCCGCTGCCGCGAACCGTTCCGCGAG
CCGTTCCCCGGACCGTTCCTCGCGCCGTTCCTCGAGACATTCCCCGGGCC
GTTCCTCCACCGCCGCCGCGAACCGTTCCGCGAGCCGTTCCCCGGATCGT
TCTCTCCGCCGCTTCTTGATGGACGACGCCTCGGGCGGGGGGCTTCCGCC
TTCGTACCCCGAGGCCAAGCTGATCTCCGAGCTGGAGAACCGCGCGAAGC
GAATCGCCGAGCTGGAAGAGCGCGTCGAGAGCGCCCTGTCGGCCGCGGCG
GAGCGGGCGACACAGTCCGCGGTTTTCGAGGAGCAGGCCCGGAAGGAGAA
GTCTCTCGCCGGGGCGAGGGCCAAGCAGATCGCGGAGCTGCTGGAGGCGC
GCGTCGAGAGCGCTTCGTCCTTGTCCTTGGCGGCGGACCGAGCGAAACAG
GTAGGTGCTTGGCTGCTGCTGCTAGGTGCTTGGCTGCTGCTGCTGCTGCT
GCTGCTGCCGCTGCTGCTGCTGGGGAGATGTGGCTGCTGTTGTTGTCTGT
TGACAGCAGGGTACTTAGCTCCCTCTGTGGCGTTTGGGTGCTCACGGGTT
TGCTGTCGAGTACCGCTGTAGTCAGCTGAGCAGACGAGGGGAGAAGGTTG
GGGAGGAGGAGGAGGAGGAGGAGGAGGCGCGTGAAAGATGTTCGAAGTGG
GAACCGAGAAGATATTGGAGTGCAGGGACTCGCACGACTCCCAGAGAGCC
TTGAAGGGACCGCCAGACGCCAGATGGCTCTTGAGACATCTTAGTAAGCA
CGTGTCCGGGTAGGAAGTTTCGGTGGGAGAGCGAGAGAAAGGTGTCAGCA
CCCGGGGGGAGGGGGTTCTGACGACCTTCGCCTCGTCTCTAGTAGAAGGC
CCACACGGCAGTCTATGCCGATGTACATTTGAATTTGCCGGCACGAGACT
TTGGGTGCTTTGCCCGAACATATTTATGTATTTATGTACATACACACATG
GCTAAAACTCATACAGGACAGGCAGCAGTGGTCCGATACCCCGCCCGCGG
CTGTCCGGGGGTGATATTTAACATTTAGCCGACTGCCAGATGCCCACGCA
ATCTCCCGAAGGCTGTTGCGGTATTACTCCTCCGGGTGGGCGTTTGCGTT
AGATAAACACCCATTGCAAGTACGCACAACAGATGAGGGTGTACACACAT
CATTATTGTTGTTGTTGTTGTTCGCATCAAAAACCGTTCCGATCTCTCCA
CCGAGTACCCCCTTATGCCCGTACAATCAACACTTGATGCGGTCAATCCC
CGTGGTCACAGGATAACTTGTACCTCAAAAAAGGTGTATGGTATACGAAA
ATAAAATGGACCGGAAAGGTCAGCAAAGTATGCATTCATTGTACATGCAT
ATTTATCTATGTGCGCAGGCTTGACATGTACTGGACGTTTCAAAATCTTT
TAACAGGGCGCCGCGGGGTCAGCTCCGACAAGGGGCAGCAAGGGGCCTGG
TCCTGCCGCCAGGCCCCCGTCGGCGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1271:13970..18746+

>mRNA_L-elsbetiae_contig1271.2177.1 ID=mRNA_L-elsbetiae_contig1271.2177.1|Name=mRNA_L-elsbetiae_contig1271.2177.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1986bp|location=Sequence derived from alignment at L-elsbetiae_contig1271:13970..18746+ (Laminarionema elsbetiae ELsaHSoW15)
GAGGGCAAAGCCGGCGCAGGTACTCAGCCCGTCTGCGGGCTTGGTGCCTC
AACGACGGCAAGCCTCGAACCCCACCCGGAGGGCAAAGCCGGCGCAGGTA
CTCAGCCCGTCTGCGGGCTTGGTGCCTCAACGACGGCAAGCCTCGAACCC
CACCCGCGGAAGGCTAACACCCACGAGGTTACGGTTACGCCGAAGGTCGG
GGCCAGCGGGCTGGGGCTGATCCTCGGGAAGGAGAAGGAGGGTGCCGGTT
GGGTTGTCGAGGGCTTCCGGCCCATGCCGGGCGGAGAGCGGAACCCTGCG
AAGCGGAAGGCTAACACCCACGAGGTTACGGTTACGCCGAAGGTCGGGGC
CAGCGGGCTGGGGCTGATCCTCGGGAAGGAGAAGGAGGGTGCCGGTTGGG
TTGTCGAGGGCTTCCGGCCCATGCCGGGCGGAGAGCGGAACCCTGCGAAG
GCGGCCGGGATCGAGGCAGGGGACACTCTACGCCAGGTGGACGAAGTGCG
ACTGGGCTCTTTGTCGTACGAAGACGGCGTGGAGTTGCTAGAGAGGCGAA
AGGGCGACGTTGTCCTCACCGCCGTTCGCCCAAACGGCGGCCGGGATCGA
GGCAGGGGACACTCTACGCCAGGTGGACGAAGTGCGACTGGGCTCTTTGT
CGTACGAAGACGGCGTGGAGTTGCTAGAGAGGCGAAAGGGCGACGTTGTC
CTCACCGCCGTTCGCCCAAACGCGCCCCTCGGCCCCTCATCCCCATCCCC
GAATGGTGACCACACGCCGGCGCCGTTCCATGCGGAAGAGGACCGTTCCC
CGCGCCGTTCGTCGGATCGTTCCTCGCGCCGTTCCTCGAGACATTCTCCG
GGCCGTTCCTCCGCTGCCGCGAACCGTTCCGCGAGCCGTTCCCCGGACCG
TTCCTCGCGCCGTTCCTCGAGACATTCCCCGGGCCGTTCCTCCACCGCCG
CCGCGAACCGTTCCGCGAGCCGTTCCCCGGATCGTTCTCTCCGCCGCTTC
TTGATGGACGACGCCTCGGGCGGGGGGCTTCCGCCTTCGTACCCCGAGGC
CAAGCTGATCTCCGAGCTGGAGAACCGCGCGAAGCGAATCGCCGAGCTGG
AAGAGCGCGTCGAGAGCGCCCTGTCGGCCGCGGCGGAGCGGGCGACACAG
TCCGCGGTTTTCGAGGAGCAGGCCCGGAAGGAGAAGTCTCTCGCCGGGGC
GAGGGCCAAGCAGATCGCGGAGCTGCTGGAGGCGCGCGTCGAGAGCGCTT
CGTCCTTGTCCTTGGCGGCGGACCGAGCGAAACAGCGCCCCTCGGCCCCT
CATCCCCATCCCCGAATGGTGACCACACGCCGGCGCCGTTCCATGCGGAA
GAGGACCGTTCCCCGCGCCGTTCGTCGGATCGTTCCTCGCGCCGTTCCTC
GAGACATTCTCCGGGCCGTTCCTCCGCTGCCGCGAACCGTTCCGCGAGCC
GTTCCCCGGACCGTTCCTCGCGCCGTTCCTCGAGACATTCCCCGGGCCGT
TCCTCCACCGCCGCCGCGAACCGTTCCGCGAGCCGTTCCCCGGATCGTTC
TCTCCGCCGCTTCTTGATGGACGACGCCTCGGGCGGGGGGCTTCCGCCTT
CGTACCCCGAGGCCAAGCTGATCTCCGAGCTGGAGAACCGCGCGAAGCGA
ATCGCCGAGCTGGAAGAGCGCGTCGAGAGCGCCCTGTCGGCCGCGGCGGA
GCGGGCGACACAGTCCGCGGTTTTCGAGGAGCAGGCCCGGAAGGAGAAGT
CTCTCGCCGGGGCGAGGGCCAAGCAGATCGCGGAGCTGCTGGAGGCGCGC
GTCGAGAGCGCTTCGTCCTTGTCCTTGGCGGCGGACCGAGCGAAACAGGG
CGCCGCGGGGTCAGCTCCGACAAGGGGCAGCAAGGGGCCTGGTCCTGCCG
CCAGGCCCCCGTCGGCGGGCGCCGCGGGGTCAGCTCCGACAAGGGGCAGC
AAGGGGCCTGGTCCTGCCGCCAGGCCCCCGTCGGCG
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