mRNA_L-elsbetiae_contig1144.1259.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1144.1259.1
Unique NamemRNA_L-elsbetiae_contig1144.1259.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1144.1259.1 vs. uniprot
Match: A0A6H5JCV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCV6_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 5.330e-14
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:  178 PSAFSPTAANPLHAHLDVLAVAAPRLLGEAPPDFRLSAVSYRIAALERQLQQQ 336
            PS + PT+ NPLHAHL+ LA AAP LL EAPPDFRLSA S+RIAALE QL+QQ
Sbjct:  314 PSLYVPTSPNPLHAHLEALAAAAPHLLAEAPPDFRLSATSHRIAALEEQLRQQ 366
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BLAST of mRNA_L-elsbetiae_contig1144.1259.1 vs. uniprot
Match: D7FKD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKD5_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.000e-13
Identity = 38/52 (73.08%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:  181 SAFSPTAANPLHAHLDVLAVAAPRLLGEAPPDFRLSAVSYRIAALERQLQQQ 336
            S + PT+ NPLHAHL+ LA AAPRLL EAPPDFRLSA+S+RIA LE QL+QQ
Sbjct:  262 SLYVPTSPNPLHAHLEALAAAAPRLLAEAPPDFRLSAISHRIAVLEEQLRQQ 313
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1144.1259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCV6_9PHAE5.330e-1473.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKD5_ECTSI1.000e-1373.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1144contigL-elsbetiae_contig1144:11878..12775 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_005800.1
Exons2
Model size339
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815350.7916045-CDS-L-elsbetiae_contig1144:11878..121471622815350.7916045-CDS-L-elsbetiae_contig1144:11878..12147Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1144 11879..12147 -
1691682855.112583-CDS-L-elsbetiae_contig1144:11878..121471691682855.112583-CDS-L-elsbetiae_contig1144:11878..12147Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1144 11879..12147 -
1622815350.8022873-CDS-L-elsbetiae_contig1144:12708..127751622815350.8022873-CDS-L-elsbetiae_contig1144:12708..12775Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1144 12709..12775 -
1691682855.1234953-CDS-L-elsbetiae_contig1144:12708..127751691682855.1234953-CDS-L-elsbetiae_contig1144:12708..12775Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1144 12709..12775 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1144.1259.1prot_L-elsbetiae_contig1144.1259.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1144 11879..12775 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1144.1259.1

>prot_L-elsbetiae_contig1144.1259.1 ID=prot_L-elsbetiae_contig1144.1259.1|Name=mRNA_L-elsbetiae_contig1144.1259.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
DLDTTNTKRPGAHAERGDVVEKCVKADSCEEPESDKHGGADALHGGSRAC
SAERPSQPPPSAFSPTAANPLHAHLDVLAVAAPRLLGEAPPDFRLSAVSY
RIAALERQLQQQ
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mRNA from alignment at L-elsbetiae_contig1144:11878..12775-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1144.1259.1 ID=mRNA_L-elsbetiae_contig1144.1259.1|Name=mRNA_L-elsbetiae_contig1144.1259.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=898bp|location=Sequence derived from alignment at L-elsbetiae_contig1144:11878..12775- (Laminarionema elsbetiae ELsaHSoW15)
GACCTCGACACCACCAACACTAAGCGGCCGGGGGCTCATGCTGAGCGTGG
GGATGTGGTCGAGAAATGTGAGATAACATATGTATTTATGTGCATACGCG
GACGCTGCGCGCCTGCCCCGTTGCTGCAAGTGTGGTTCCCTCAAGACCAT
ATTGCTCGGTGTGCCAACTCTTGTGTTGTTGAAACTAAGGAAAATCTCGG
CTCTAAGCAAATCTGGGTAAACACGGAGGAGGTAAAGATTGTCGCGCCGG
TATTTCCCCCGAGTTAAAAATAATGGTACATACAATATATCTAGACTAGT
CTATGTATCTAAAATATGTAAGCATGTAGACTACTGTAGTATGGTAGAAA
GAGTGCGCCTGTTGAGAGCATATTATAGTCTTATAGACGGAAATAACGGA
ACCTCGGCCAAGCGAGTGTCTTGGCAGTATTGCAGGAAACGCACGGCGAC
GTGATTAAAAAAGAAGACGCCCCCTGGGGAGTATCTGCACCAGGGTGTGC
AGACCCCCTCAAACCCACACCTTTGAGAGGGTGCCTCGTTTGCCTCTCTT
GCTCTTCTCTCCTTTCCCTGGTCCCGCCCGCCCGCCCGCCCGCGCTTCGA
TCGCGATGCCGATAAACTATCAAAAAAGGTGTAAAAGCAGACTCCTGCGA
GGAGCCGGAAAGCGACAAGCACGGCGGAGCCGATGCCCTGCACGGGGGTA
GCAGGGCCTGTTCTGCTGAGCGGCCGTCGCAGCCACCGCCGTCCGCGTTC
TCTCCCACAGCGGCAAACCCTCTGCACGCCCACCTCGACGTCCTCGCCGT
GGCCGCCCCGCGGCTCCTCGGCGAGGCCCCGCCGGACTTCCGCCTGTCGG
CCGTTTCGTACCGGATCGCCGCGCTCGAGAGGCAGCTTCAGCAGCAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1144:11878..12775-

>mRNA_L-elsbetiae_contig1144.1259.1 ID=mRNA_L-elsbetiae_contig1144.1259.1|Name=mRNA_L-elsbetiae_contig1144.1259.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig1144:11878..12775- (Laminarionema elsbetiae ELsaHSoW15)
GACCTCGACACCACCAACACTAAGCGGCCGGGGGCTCATGCTGAGCGTGG
GGATGTGGTCGAGAAATGACCTCGACACCACCAACACTAAGCGGCCGGGG
GCTCATGCTGAGCGTGGGGATGTGGTCGAGAAATGTGTAAAAGCAGACTC
CTGCGAGGAGCCGGAAAGCGACAAGCACGGCGGAGCCGATGCCCTGCACG
GGGGTAGCAGGGCCTGTTCTGCTGAGCGGCCGTCGCAGCCACCGCCGTCC
GCGTTCTCTCCCACAGCGGCAAACCCTCTGCACGCCCACCTCGACGTCCT
CGCCGTGGCCGCCCCGCGGCTCCTCGGCGAGGCCCCGCCGGACTTCCGCC
TGTCGGCCGTTTCGTACCGGATCGCCGCGCTCGAGAGGCAGCTTCAGCAG
CAGGTGTAAAAGCAGACTCCTGCGAGGAGCCGGAAAGCGACAAGCACGGC
GGAGCCGATGCCCTGCACGGGGGTAGCAGGGCCTGTTCTGCTGAGCGGCC
GTCGCAGCCACCGCCGTCCGCGTTCTCTCCCACAGCGGCAAACCCTCTGC
ACGCCCACCTCGACGTCCTCGCCGTGGCCGCCCCGCGGCTCCTCGGCGAG
GCCCCGCCGGACTTCCGCCTGTCGGCCGTTTCGTACCGGATCGCCGCGCT
CGAGAGGCAGCTTCAGCAGCAG
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