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Homology
BLAST of mRNA_L-elsbetiae_contig10952.859.1 vs. uniprot
Match: D8LEB0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEB0_ECTSI) HSP 1 Score: 308 bits (788), Expect = 5.490e-96 Identity = 268/504 (53.17%), Postives = 308/504 (61.11%), Query Frame = 1
Query: 1 RPKAAVGESTTKESSKGLAWWRPR---RSNLADLSNTSSASTSIXXXXXXXXXXXXHRHGLVEAS--------PSSANRLLFDDPATEGERGAAGLPTRPFETQQKPPRADGKQQLWTRGSREGTAAPSPEEERDDHNDANTDTDKTATAGAPPLLLPAYXXXXXXXXXXXXXXXXLLGSSSSGKLKSLKLAPPTG-----YSASSAATTDRSPGTPVTSVGSSDASEGTWTESLGRAKGRRFEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPPRPGAAGKNEIGVDTNRSTAAPQHGXXXXXXXXXXXXXXAADGRRWEEGGMDDETA--DGGQVAAGTMRDLTAGHSEFLARRGFAAGLVSHFLEETNCEFRVLQGGTSCGMTAHQLQEAAVRLEEAFVPAVKRLRERASMDVVLDSLFEGKDDAGEFVVRFEVSITRCHPEDIESSPTPALQECAGAIREAIREDGVPEQSTHEVVFVGRPMWELVSPVLDFSAKA 1458
+PK +K++S G AWWRPR R++LAD+S S+ +TS+ XXXXXXXXXX PSS LFD AA + FETQ KP WTRGSR+GT APSP+E D XXXXXXXXXXXX LLGSSS GKLKSLKLAP ++A++AA PGTPV G TW +G + RR XXXXXXXXXXXXXXXXXXXX + A +E G+ T A Q G W E GMDDETA +GGQVAA MR LT+G EFLARRGFAAGLVSHFLEETNCEFRVLQGG SCGM A QL++AA RLEE FVPAVKRLR R+S+DVVLDSLF+G DDAG+FVVRFEV++TRCHPEDI+SSP PAL+ECA AI+EA+R++GV ++ THEVVFVGRPMWELVSPVLD SAKA
Sbjct: 17 QPKDVGHSEVSKQNSNGFAWWRPRSILRASLADVS-LSTTNTSVVSXXXXXXXXXXXXXXXXXXXXXXXXXXXPSS----LFDV--------AAAAQQQQFETQLKPKIQH--HSNWTRGSRDGTEAPSPDE------DDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEQGLLGSSS-GKLKSLKLAPIGSEQLAKHTAAAAAVDSDRPGTPVRGGGIGS----TWC--VGPLQVRRQXXXXXXXXXXXXXXXXXXXXXXRTNHHAGAVGAR-----FAVASEGGMGTLGEKATAQAGVGEGS---------------WREEGMDDETAAEEGGQVAAERMRALTSGQGEFLARRGFAAGLVSHFLEETNCEFRVLQGGASCGMNAQQLEDAAARLEEVFVPAVKRLRARSSVDVVLDSLFQGADDAGDFVVRFEVTLTRCHPEDIDSSPAPALRECASAIKEAVRDEGVNDKDTHEVVFVGRPMWELVSPVLDLSAKA 472
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 6 |
Model size | 1504 |
Cds size | 537 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815312.4404113-UTR-L-elsbetiae_contig10952:1842..2745 | 1622815312.4404113-UTR-L-elsbetiae_contig10952:1842..2745 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig10952 1843..2745 + |
1691682831.486998-UTR-L-elsbetiae_contig10952:1842..2745 | 1691682831.486998-UTR-L-elsbetiae_contig10952:1842..2745 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig10952 1843..2745 + |
1622815312.4537492-UTR-L-elsbetiae_contig10952:2865..2898 | 1622815312.4537492-UTR-L-elsbetiae_contig10952:2865..2898 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig10952 2866..2898 + |
1691682831.5018432-UTR-L-elsbetiae_contig10952:2865..2898 | 1691682831.5018432-UTR-L-elsbetiae_contig10952:2865..2898 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig10952 2866..2898 + |
1622815312.5358188-UTR-L-elsbetiae_contig10952:6028..6059 | 1622815312.5358188-UTR-L-elsbetiae_contig10952:6028..6059 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig10952 6029..6059 + |
1691682831.5722826-UTR-L-elsbetiae_contig10952:6028..6059 | 1691682831.5722826-UTR-L-elsbetiae_contig10952:6028..6059 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig10952 6029..6059 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815312.4661648-CDS-L-elsbetiae_contig10952:2898..2916 | 1622815312.4661648-CDS-L-elsbetiae_contig10952:2898..2916 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10952 2899..2916 + |
1691682831.512014-CDS-L-elsbetiae_contig10952:2898..2916 | 1691682831.512014-CDS-L-elsbetiae_contig10952:2898..2916 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10952 2899..2916 + |
1622815312.481412-CDS-L-elsbetiae_contig10952:3024..3095 | 1622815312.481412-CDS-L-elsbetiae_contig10952:3024..3095 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10952 3025..3095 + |
1691682831.5231383-CDS-L-elsbetiae_contig10952:3024..3095 | 1691682831.5231383-CDS-L-elsbetiae_contig10952:3024..3095 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10952 3025..3095 + |
1622815312.4933712-CDS-L-elsbetiae_contig10952:3897..3964 | 1622815312.4933712-CDS-L-elsbetiae_contig10952:3897..3964 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10952 3898..3964 + |
1691682831.5404487-CDS-L-elsbetiae_contig10952:3897..3964 | 1691682831.5404487-CDS-L-elsbetiae_contig10952:3897..3964 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10952 3898..3964 + |
1622815312.50974-CDS-L-elsbetiae_contig10952:4400..4588 | 1622815312.50974-CDS-L-elsbetiae_contig10952:4400..4588 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10952 4401..4588 + |
1691682831.5501323-CDS-L-elsbetiae_contig10952:4400..4588 | 1691682831.5501323-CDS-L-elsbetiae_contig10952:4400..4588 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10952 4401..4588 + |
1622815312.5224488-CDS-L-elsbetiae_contig10952:5835..6028 | 1622815312.5224488-CDS-L-elsbetiae_contig10952:5835..6028 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10952 5836..6028 + |
1691682831.5594873-CDS-L-elsbetiae_contig10952:5835..6028 | 1691682831.5594873-CDS-L-elsbetiae_contig10952:5835..6028 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10952 5836..6028 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig10952.859.1 >prot_L-elsbetiae_contig10952.859.1 ID=prot_L-elsbetiae_contig10952.859.1|Name=mRNA_L-elsbetiae_contig10952.859.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=179bp
MDDETADGGQVAAGTMRDLTAGHSEFLARRGFAAGLVSHFLEETNCEFRV LQGGTSCGMTAHQLQEAAVRLEEAFVPAVKRLRERASMDVVLDSLFEGKD DAGEFVVRFEVSITRCHPEDIESSPTPALQECAGAIREAIREDGVPEQST HEVVFVGRPMWELVSPVLDFSAKAAFSG* back to topmRNA from alignment at L-elsbetiae_contig10952:1843..6059+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig10952.859.1 ID=mRNA_L-elsbetiae_contig10952.859.1|Name=mRNA_L-elsbetiae_contig10952.859.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4217bp|location=Sequence derived from alignment at L-elsbetiae_contig10952:1843..6059+ (Laminarionema elsbetiae ELsaHSoW15) CGCCCGAAAGCCGCGGTAGGCGAATCGACGACGAAAGAATCCAGCAAGGG
CCTTGCATGGTGGAGGCCAAGGCGCTCTAACCTCGCCGACCTCTCCAACA
CCAGCTCCGCAAGCACGAGCATCATCAGCACCAGCTCCCCGCCCCAACGG
CCGCACCACCACCGGCACGGGCTTGTAGAAGCCTCGCCGTCGTCGGCCAA
CCGGCTGCTGTTCGACGATCCAGCAACAGAGGGGGAAAGAGGAGCAGCAG
GGCTGCCGACACGACCTTTCGAGACGCAGCAGAAGCCGCCACGGGCCGAC
GGAAAGCAGCAGCTCTGGACGCGAGGCAGCCGCGAGGGGACCGCGGCGCC
GTCCCCCGAGGAGGAGAGGGACGATCACAACGACGCCAACACCGACACCG
ACAAAACCGCCACCGCCGGCGCGCCGCCGTTGCTCTTGCCGGCGTACAGC
AGCAGCTCCTCCGCCGCGCGCCGGCGGCGGCCGCAGGGAGGAGACCTCCT
GGGGTCCTCCTCGTCGGGCAAGTTAAAGTCCCTCAAGCTGGCTCCTCCGA
CAGGTTATTCTGCGAGTTCCGCCGCCACCACCGACCGTTCGCCCGGGACA
CCGGTAACCAGTGTCGGCAGCAGTGACGCCAGTGAGGGTACGTGGACGGA
ATCCCTGGGCCGCGCAAAAGGCCGCCGGTTTGAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAAGATGGCGGTCGGAG
GAACACGGCGGCCGCCGCACGCCCACGACGAAGCCACCGCGCCCCGGGGC
GGCTGGAAAAAACGAAATCGGGGTCGACACCAACCGCAGCACGGCGGCGC
CGCAGCACGGCGGTAGAGCAGCAGCAGCAGCGGCGGCGGCGGAGACGGCG
GTGGTAGCGGCGGCGCATGGGAGAACCGGAGCCGAAGCCGGAGCCAAAGC
CAGAGCCGGCGGCGGCAGGAGCGGCGGCGTGGGCGGCGAGGCGGTCTGCA
GCAGCACAAGGGAGAGGAGGGAGGCGGCGGATGGACGGCGCTGGGAGGAG
GGGGGGATGGACGATGAAACGGCCGTGCGGTTTTTCAACGCGGCGGCGGA
GCGGAGCGTCGTGTACGACATACTCGCCGTGGATCGGGGGTGCGGGTTCT
GCGACACGTCCATCGTGCCGTTCCCCGTCGAGGATGGGGGCCAGGTGGCG
GCGGGAACGATGCGGGATTTAACGGCCGGCCACAGCGAGTTTCTTGCCAG
AAGGTGGGTGGCTGGGTGGGCGGTTAAGATGCGCAGATGGCCCATCGTTG
GAGGTCTTGGTCGGGTCGGGGGCTGGAACTCTGGTTTTTGTTGGGTTTTT
TTCCCGTGACCACCAGAGGGTGGCCTCGTGCTTGCGACAATACGGTTTTG
GTTTGTGGTTGGGGCTGTTAGTCTCTTTTCGTATGTTTGTGTTGCAAGTG
GGGGGGGGCGAATTTTTTCGCTTCGTGTTTTTGGAGGTGTGTATCTATTG
GCGGTGGCTTTTCGTGGTATCTTTGTGCGATTTTGTACGCTTCGCGGCTT
GTCATGAGGCGTTCCTTGTGGCGACTTGCGCGTTGTGCGCCCCCTCCAGC
AAGTAGTCGCAATTGGAGATAGCCATGGGACTCGGGCGCGTATTGACAAC
TCCAGAGGCGCTCGGTTGTTACTGCTGTCTTTTACTAGTCCTTGTTCCTG
TACGAGGCCATTTGTATCTGTCTTGGCCTCGTAGATTGTCTCTCCCACAC
GCCTTGGGGGTTGGTCTGACTTTCCAAGAAGAGCGGCATGATTTGGCTTT
TCTTCGACCTTCGGCACACGGTTGTAAAAGGGCATACGGTAGTTCGGTAC
CTGGCGTGTCCTCGATCACACAACCTCGCGACCCCCCTGCCCCCATCGCC
TTCAAATGTACTTCCTCTTCCTCATTTCCACCCCCCACTGCATGCCACTC
GTCTCTGTCTCTCTCCGCTGCCCCCCCCCCCCCCTCCCGCGTATCCCCCA
CCCTGTGTGCATCCTCCCCGTTTCTGCCTTTTTTGGTTATCTCTCCTGAA
AACAGGGGCTTTGCCGCAGGCTTGGTGTCGCATTTCTTGGAGGAGACGAA
CTGCGAGTTCAGGGTGCTGCAGGTGATGAGGTTGGAGGAGAGGCCCGTTA
CGGGGCGCCGCCGTTGCTTGCCAATATGAACCGTATCGGTAGAGACAGTA
TGTAGCAGCAGCAGCAGCAGCAGCAGCGGGCTGTGTTGTCGAACTATTAC
ATGGCACATACGTACAACGCAACGCGAAGAGAGTAAACTGAGAGTCAGAG
TGGCAGCTTTGTGAGGTTCCACTACAATACTCCTGCTACTGTACTCTGTG
CTGTTTTTCGTGTTGGAACCTTGGCTGGGCCGCGCTGCTTAAGGGCTCTA
CAGTATGTACATATCTAGCCCCGAGAGCCTTGACTTGACGCTCACGCTCA
CTCTTTTTGTTATCTCTGCCGCTCCAAAATCTGACTTAACCCCCCCCCCC
CCCCCCCCCGTCTGGTTTATTTGGGTCCGTGTGACGTGCCCCTCCCTCGG
TGCAACAGGGAGGGACGTCTTGCGGCATGACCGCGCACCAGCTGCAGGAG
GCCGCTGTCCGGCTGGAGGAGGCGTTCGTGCCCGCCGTGAAACGCCTGCG
CGAGCGGGCTTCGATGGACGTGGTGCTCGACTCGCTCTTTGAGGGCAAGG
ACGACGCCGGAGAGTTCGTCGTGCGCTTCGAGGTTTCCATCACCAGGTGA
GGCGTTGCGAGCGGAAAGACGACAAGTATCATATGTACTTGAAAGAGTGT
ACGTACGTAAATATGAGCTAAAAAAAATATTTTGAAAAAATAAAAATTAC
GTGTGGGTGTTTGTTCTCCACACTTAAGAGTCGTCGCTTTTCTGCTTCGA
GCCCTCCCCCCCCAGGCCCATCCATGTCCACGGCCGCTCAATATTTTGCC
ACGTTTACGGCACGACGTTCCACAACGTTTGCTAGGCTTCTTTAGCCTCC
GCAAGCAGGCGATTCCCGAAATTGCGGCGGAACATTTTTTGTTTACTGGG
TTTAGGAGTAATGAAAAAGAAGGTGTAGGTGGGTAAAACAGAAGAAAAGA
ATCGCCCACTGCTGTACGGAGGCGGCGGAGCCTATCGTTTTGCGTCCGTC
TGCCTGGTGCGGCAGGTCAGGTGCCCGCTGATTTTATTTTGTTTTCGGGT
GTTAAATATATTGTAGGCTTTTGCTCTATTTTTGCCTCCCACGGTCAAGA
GAGTTGGGTGCAGCTGCTGTAGATGGTTGGTTGACGGTCTGCGGTACACA
CACGTCTTGGCCGCACCGCCCAGCGCAGCCAGGCAGCCAGGCAGCGCTCT
TTCCCCCCCTCGTGGGCAGCGTGGGGGGCTCGGCAATGGCGTTCATTGCT
CCCCTGGGCTTTTTGTTCGTATGTACGCCTTTCGTGGACGTTTTAGGTAG
TAGTGTATACAAATATCAGCAGTCCAGCGTGCGAAAAAAGTCCAGGCGTT
TCATGTACGATGTCAAGGACATTGGTTGCAGGCTTCGTTGTGCCTCAGGG
AGGCAGAGTTTTTTTTTCCTCCTTGTCTCCGGCTGCACACGTACCTACGA
GGGGGGCGGCCCTTGCGATCTGTGCAACCACCCCTCGACCCTCGACTCAT
CTCGTCCCGTTTGCCAGTGCTCCCCCCGCGCTTGCCACGAACTCTCCATG
TCTTTCTTTCGTTTACCCATTTATGTACATATGTATGCACAAGATTGAGA
GCGTGCCTGCCGTTCCCGAAGTTTGTTTTTTTAAGTCTACAGCAACAGTA
GCTCTGTTTTTTTGCGGCGCACGCAGCCGCCCCCCCCCCCGCTTCCAAGA
CAAATGGGATGACATACGGACGGGCGGTGTTTGTAACTCCCGTGTATATA
TTGAACCCCTAAATGGACGACAACGCAAGCAAAGACAGCACCTGCCTACA
TACCTATACCCGTGTACGGATTGCGCTCGCACGACCGATGCAGGTGCCAC
CCGGAGGACATCGAGTCCAGCCCCACTCCCGCCCTCCAAGAGTGCGCCGG
GGCGATCAGAGAAGCCATCCGAGAGGACGGGGTGCCGGAGCAGTCGACGC
ACGAAGTGGTGTTCGTGGGCAGGCCCATGTGGGAGCTAGTGTCGCCGGTC
TTGGATTTCTCCGCGAAGGCTGCTTTCTCTGGGTGAAGGGGGGAGACGCG
GAGGGCTGGCTTGGGAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig10952:1843..6059+ >mRNA_L-elsbetiae_contig10952.859.1 ID=mRNA_L-elsbetiae_contig10952.859.1|Name=mRNA_L-elsbetiae_contig10952.859.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1074bp|location=Sequence derived from alignment at L-elsbetiae_contig10952:1843..6059+ (Laminarionema elsbetiae ELsaHSoW15) ATGGACGATGAAACGGCCATGGACGATGAAACGGCCGATGGGGGCCAGGT GGCGGCGGGAACGATGCGGGATTTAACGGCCGGCCACAGCGAGTTTCTTG CCAGAAGGATGGGGGCCAGGTGGCGGCGGGAACGATGCGGGATTTAACGG CCGGCCACAGCGAGTTTCTTGCCAGAAGGGGCTTTGCCGCAGGCTTGGTG TCGCATTTCTTGGAGGAGACGAACTGCGAGTTCAGGGTGCTGCAGGGGCT TTGCCGCAGGCTTGGTGTCGCATTTCTTGGAGGAGACGAACTGCGAGTTC AGGGTGCTGCAGGGAGGGACGTCTTGCGGCATGACCGCGCACCAGCTGCA GGAGGCCGCTGTCCGGCTGGAGGAGGCGTTCGTGCCCGCCGTGAAACGCC TGCGCGAGCGGGCTTCGATGGACGTGGTGCTCGACTCGCTCTTTGAGGGC AAGGACGACGCCGGAGAGTTCGTCGTGCGCTTCGAGGTTTCCATCACCAG GGAGGGACGTCTTGCGGCATGACCGCGCACCAGCTGCAGGAGGCCGCTGT CCGGCTGGAGGAGGCGTTCGTGCCCGCCGTGAAACGCCTGCGCGAGCGGG CTTCGATGGACGTGGTGCTCGACTCGCTCTTTGAGGGCAAGGACGACGCC GGAGAGTTCGTCGTGCGCTTCGAGGTTTCCATCACCAGGTGCCACCCGGA GGACATCGAGTCCAGCCCCACTCCCGCCCTCCAAGAGTGCGCCGGGGCGA TCAGAGAAGCCATCCGAGAGGACGGGGTGCCGGAGCAGTCGACGCACGAA GTGGTGTTCGTGGGCAGGCCCATGTGGGAGCTAGTGTCGCCGGTCTTGGA TTTCTCCGCGAAGGCTGCTTTCTCTGGGTGAGTGCCACCCGGAGGACATC GAGTCCAGCCCCACTCCCGCCCTCCAAGAGTGCGCCGGGGCGATCAGAGA AGCCATCCGAGAGGACGGGGTGCCGGAGCAGTCGACGCACGAAGTGGTGT TCGTGGGCAGGCCCATGTGGGAGCTAGTGTCGCCGGTCTTGGATTTCTCC GCGAAGGCTGCTTTCTCTGGGTGA back to top
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