mRNA_L-elsbetiae_contig10952.859.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10952.859.1
Unique NamemRNA_L-elsbetiae_contig10952.859.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10952.859.1 vs. uniprot
Match: D8LEB0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEB0_ECTSI)

HSP 1 Score: 308 bits (788), Expect = 5.490e-96
Identity = 268/504 (53.17%), Postives = 308/504 (61.11%), Query Frame = 1 
Query:    1 RPKAAVGESTTKESSKGLAWWRPR---RSNLADLSNTSSASTSIXXXXXXXXXXXXHRHGLVEAS--------PSSANRLLFDDPATEGERGAAGLPTRPFETQQKPPRADGKQQLWTRGSREGTAAPSPEEERDDHNDANTDTDKTATAGAPPLLLPAYXXXXXXXXXXXXXXXXLLGSSSSGKLKSLKLAPPTG-----YSASSAATTDRSPGTPVTSVGSSDASEGTWTESLGRAKGRRFEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPPRPGAAGKNEIGVDTNRSTAAPQHGXXXXXXXXXXXXXXAADGRRWEEGGMDDETA--DGGQVAAGTMRDLTAGHSEFLARRGFAAGLVSHFLEETNCEFRVLQGGTSCGMTAHQLQEAAVRLEEAFVPAVKRLRERASMDVVLDSLFEGKDDAGEFVVRFEVSITRCHPEDIESSPTPALQECAGAIREAIREDGVPEQSTHEVVFVGRPMWELVSPVLDFSAKA 1458
            +PK       +K++S G AWWRPR   R++LAD+S  S+ +TS+  XXXXXXXXXX                 PSS    LFD         AA    + FETQ KP         WTRGSR+GT APSP+E      D                     XXXXXXXXXXXX    LLGSSS GKLKSLKLAP        ++A++AA     PGTPV   G       TW   +G  + RR   XXXXXXXXXXXXXXXXXXXX           +      A  +E G+ T    A  Q G                    W E GMDDETA  +GGQVAA  MR LT+G  EFLARRGFAAGLVSHFLEETNCEFRVLQGG SCGM A QL++AA RLEE FVPAVKRLR R+S+DVVLDSLF+G DDAG+FVVRFEV++TRCHPEDI+SSP PAL+ECA AI+EA+R++GV ++ THEVVFVGRPMWELVSPVLD SAKA
Sbjct:   17 QPKDVGHSEVSKQNSNGFAWWRPRSILRASLADVS-LSTTNTSVVSXXXXXXXXXXXXXXXXXXXXXXXXXXXPSS----LFDV--------AAAAQQQQFETQLKPKIQH--HSNWTRGSRDGTEAPSPDE------DDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEQGLLGSSS-GKLKSLKLAPIGSEQLAKHTAAAAAVDSDRPGTPVRGGGIGS----TWC--VGPLQVRRQXXXXXXXXXXXXXXXXXXXXXXRTNHHAGAVGAR-----FAVASEGGMGTLGEKATAQAGVGEGS---------------WREEGMDDETAAEEGGQVAAERMRALTSGQGEFLARRGFAAGLVSHFLEETNCEFRVLQGGASCGMNAQQLEDAAARLEEVFVPAVKRLRARSSVDVVLDSLFQGADDAGDFVVRFEVTLTRCHPEDIDSSPAPALRECASAIKEAVRDEGVNDKDTHEVVFVGRPMWELVSPVLDLSAKA 472
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10952.859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEB0_ECTSI5.490e-9653.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10952contigL-elsbetiae_contig10952:1843..6059 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1504
Cds size537
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10952.859.1prot_L-elsbetiae_contig10952.859.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10952 2899..6028 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815312.4404113-UTR-L-elsbetiae_contig10952:1842..27451622815312.4404113-UTR-L-elsbetiae_contig10952:1842..2745Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10952 1843..2745 +
1691682831.486998-UTR-L-elsbetiae_contig10952:1842..27451691682831.486998-UTR-L-elsbetiae_contig10952:1842..2745Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10952 1843..2745 +
1622815312.4537492-UTR-L-elsbetiae_contig10952:2865..28981622815312.4537492-UTR-L-elsbetiae_contig10952:2865..2898Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10952 2866..2898 +
1691682831.5018432-UTR-L-elsbetiae_contig10952:2865..28981691682831.5018432-UTR-L-elsbetiae_contig10952:2865..2898Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10952 2866..2898 +
1622815312.5358188-UTR-L-elsbetiae_contig10952:6028..60591622815312.5358188-UTR-L-elsbetiae_contig10952:6028..6059Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10952 6029..6059 +
1691682831.5722826-UTR-L-elsbetiae_contig10952:6028..60591691682831.5722826-UTR-L-elsbetiae_contig10952:6028..6059Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10952 6029..6059 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815312.4661648-CDS-L-elsbetiae_contig10952:2898..29161622815312.4661648-CDS-L-elsbetiae_contig10952:2898..2916Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10952 2899..2916 +
1691682831.512014-CDS-L-elsbetiae_contig10952:2898..29161691682831.512014-CDS-L-elsbetiae_contig10952:2898..2916Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10952 2899..2916 +
1622815312.481412-CDS-L-elsbetiae_contig10952:3024..30951622815312.481412-CDS-L-elsbetiae_contig10952:3024..3095Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10952 3025..3095 +
1691682831.5231383-CDS-L-elsbetiae_contig10952:3024..30951691682831.5231383-CDS-L-elsbetiae_contig10952:3024..3095Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10952 3025..3095 +
1622815312.4933712-CDS-L-elsbetiae_contig10952:3897..39641622815312.4933712-CDS-L-elsbetiae_contig10952:3897..3964Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10952 3898..3964 +
1691682831.5404487-CDS-L-elsbetiae_contig10952:3897..39641691682831.5404487-CDS-L-elsbetiae_contig10952:3897..3964Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10952 3898..3964 +
1622815312.50974-CDS-L-elsbetiae_contig10952:4400..45881622815312.50974-CDS-L-elsbetiae_contig10952:4400..4588Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10952 4401..4588 +
1691682831.5501323-CDS-L-elsbetiae_contig10952:4400..45881691682831.5501323-CDS-L-elsbetiae_contig10952:4400..4588Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10952 4401..4588 +
1622815312.5224488-CDS-L-elsbetiae_contig10952:5835..60281622815312.5224488-CDS-L-elsbetiae_contig10952:5835..6028Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10952 5836..6028 +
1691682831.5594873-CDS-L-elsbetiae_contig10952:5835..60281691682831.5594873-CDS-L-elsbetiae_contig10952:5835..6028Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10952 5836..6028 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10952.859.1

>prot_L-elsbetiae_contig10952.859.1 ID=prot_L-elsbetiae_contig10952.859.1|Name=mRNA_L-elsbetiae_contig10952.859.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=179bp
MDDETADGGQVAAGTMRDLTAGHSEFLARRGFAAGLVSHFLEETNCEFRV
LQGGTSCGMTAHQLQEAAVRLEEAFVPAVKRLRERASMDVVLDSLFEGKD
DAGEFVVRFEVSITRCHPEDIESSPTPALQECAGAIREAIREDGVPEQST
HEVVFVGRPMWELVSPVLDFSAKAAFSG*
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mRNA from alignment at L-elsbetiae_contig10952:1843..6059+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10952.859.1 ID=mRNA_L-elsbetiae_contig10952.859.1|Name=mRNA_L-elsbetiae_contig10952.859.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4217bp|location=Sequence derived from alignment at L-elsbetiae_contig10952:1843..6059+ (Laminarionema elsbetiae ELsaHSoW15)
CGCCCGAAAGCCGCGGTAGGCGAATCGACGACGAAAGAATCCAGCAAGGG
CCTTGCATGGTGGAGGCCAAGGCGCTCTAACCTCGCCGACCTCTCCAACA
CCAGCTCCGCAAGCACGAGCATCATCAGCACCAGCTCCCCGCCCCAACGG
CCGCACCACCACCGGCACGGGCTTGTAGAAGCCTCGCCGTCGTCGGCCAA
CCGGCTGCTGTTCGACGATCCAGCAACAGAGGGGGAAAGAGGAGCAGCAG
GGCTGCCGACACGACCTTTCGAGACGCAGCAGAAGCCGCCACGGGCCGAC
GGAAAGCAGCAGCTCTGGACGCGAGGCAGCCGCGAGGGGACCGCGGCGCC
GTCCCCCGAGGAGGAGAGGGACGATCACAACGACGCCAACACCGACACCG
ACAAAACCGCCACCGCCGGCGCGCCGCCGTTGCTCTTGCCGGCGTACAGC
AGCAGCTCCTCCGCCGCGCGCCGGCGGCGGCCGCAGGGAGGAGACCTCCT
GGGGTCCTCCTCGTCGGGCAAGTTAAAGTCCCTCAAGCTGGCTCCTCCGA
CAGGTTATTCTGCGAGTTCCGCCGCCACCACCGACCGTTCGCCCGGGACA
CCGGTAACCAGTGTCGGCAGCAGTGACGCCAGTGAGGGTACGTGGACGGA
ATCCCTGGGCCGCGCAAAAGGCCGCCGGTTTGAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAAGATGGCGGTCGGAG
GAACACGGCGGCCGCCGCACGCCCACGACGAAGCCACCGCGCCCCGGGGC
GGCTGGAAAAAACGAAATCGGGGTCGACACCAACCGCAGCACGGCGGCGC
CGCAGCACGGCGGTAGAGCAGCAGCAGCAGCGGCGGCGGCGGAGACGGCG
GTGGTAGCGGCGGCGCATGGGAGAACCGGAGCCGAAGCCGGAGCCAAAGC
CAGAGCCGGCGGCGGCAGGAGCGGCGGCGTGGGCGGCGAGGCGGTCTGCA
GCAGCACAAGGGAGAGGAGGGAGGCGGCGGATGGACGGCGCTGGGAGGAG
GGGGGGATGGACGATGAAACGGCCGTGCGGTTTTTCAACGCGGCGGCGGA
GCGGAGCGTCGTGTACGACATACTCGCCGTGGATCGGGGGTGCGGGTTCT
GCGACACGTCCATCGTGCCGTTCCCCGTCGAGGATGGGGGCCAGGTGGCG
GCGGGAACGATGCGGGATTTAACGGCCGGCCACAGCGAGTTTCTTGCCAG
AAGGTGGGTGGCTGGGTGGGCGGTTAAGATGCGCAGATGGCCCATCGTTG
GAGGTCTTGGTCGGGTCGGGGGCTGGAACTCTGGTTTTTGTTGGGTTTTT
TTCCCGTGACCACCAGAGGGTGGCCTCGTGCTTGCGACAATACGGTTTTG
GTTTGTGGTTGGGGCTGTTAGTCTCTTTTCGTATGTTTGTGTTGCAAGTG
GGGGGGGGCGAATTTTTTCGCTTCGTGTTTTTGGAGGTGTGTATCTATTG
GCGGTGGCTTTTCGTGGTATCTTTGTGCGATTTTGTACGCTTCGCGGCTT
GTCATGAGGCGTTCCTTGTGGCGACTTGCGCGTTGTGCGCCCCCTCCAGC
AAGTAGTCGCAATTGGAGATAGCCATGGGACTCGGGCGCGTATTGACAAC
TCCAGAGGCGCTCGGTTGTTACTGCTGTCTTTTACTAGTCCTTGTTCCTG
TACGAGGCCATTTGTATCTGTCTTGGCCTCGTAGATTGTCTCTCCCACAC
GCCTTGGGGGTTGGTCTGACTTTCCAAGAAGAGCGGCATGATTTGGCTTT
TCTTCGACCTTCGGCACACGGTTGTAAAAGGGCATACGGTAGTTCGGTAC
CTGGCGTGTCCTCGATCACACAACCTCGCGACCCCCCTGCCCCCATCGCC
TTCAAATGTACTTCCTCTTCCTCATTTCCACCCCCCACTGCATGCCACTC
GTCTCTGTCTCTCTCCGCTGCCCCCCCCCCCCCCTCCCGCGTATCCCCCA
CCCTGTGTGCATCCTCCCCGTTTCTGCCTTTTTTGGTTATCTCTCCTGAA
AACAGGGGCTTTGCCGCAGGCTTGGTGTCGCATTTCTTGGAGGAGACGAA
CTGCGAGTTCAGGGTGCTGCAGGTGATGAGGTTGGAGGAGAGGCCCGTTA
CGGGGCGCCGCCGTTGCTTGCCAATATGAACCGTATCGGTAGAGACAGTA
TGTAGCAGCAGCAGCAGCAGCAGCAGCGGGCTGTGTTGTCGAACTATTAC
ATGGCACATACGTACAACGCAACGCGAAGAGAGTAAACTGAGAGTCAGAG
TGGCAGCTTTGTGAGGTTCCACTACAATACTCCTGCTACTGTACTCTGTG
CTGTTTTTCGTGTTGGAACCTTGGCTGGGCCGCGCTGCTTAAGGGCTCTA
CAGTATGTACATATCTAGCCCCGAGAGCCTTGACTTGACGCTCACGCTCA
CTCTTTTTGTTATCTCTGCCGCTCCAAAATCTGACTTAACCCCCCCCCCC
CCCCCCCCCGTCTGGTTTATTTGGGTCCGTGTGACGTGCCCCTCCCTCGG
TGCAACAGGGAGGGACGTCTTGCGGCATGACCGCGCACCAGCTGCAGGAG
GCCGCTGTCCGGCTGGAGGAGGCGTTCGTGCCCGCCGTGAAACGCCTGCG
CGAGCGGGCTTCGATGGACGTGGTGCTCGACTCGCTCTTTGAGGGCAAGG
ACGACGCCGGAGAGTTCGTCGTGCGCTTCGAGGTTTCCATCACCAGGTGA
GGCGTTGCGAGCGGAAAGACGACAAGTATCATATGTACTTGAAAGAGTGT
ACGTACGTAAATATGAGCTAAAAAAAATATTTTGAAAAAATAAAAATTAC
GTGTGGGTGTTTGTTCTCCACACTTAAGAGTCGTCGCTTTTCTGCTTCGA
GCCCTCCCCCCCCAGGCCCATCCATGTCCACGGCCGCTCAATATTTTGCC
ACGTTTACGGCACGACGTTCCACAACGTTTGCTAGGCTTCTTTAGCCTCC
GCAAGCAGGCGATTCCCGAAATTGCGGCGGAACATTTTTTGTTTACTGGG
TTTAGGAGTAATGAAAAAGAAGGTGTAGGTGGGTAAAACAGAAGAAAAGA
ATCGCCCACTGCTGTACGGAGGCGGCGGAGCCTATCGTTTTGCGTCCGTC
TGCCTGGTGCGGCAGGTCAGGTGCCCGCTGATTTTATTTTGTTTTCGGGT
GTTAAATATATTGTAGGCTTTTGCTCTATTTTTGCCTCCCACGGTCAAGA
GAGTTGGGTGCAGCTGCTGTAGATGGTTGGTTGACGGTCTGCGGTACACA
CACGTCTTGGCCGCACCGCCCAGCGCAGCCAGGCAGCCAGGCAGCGCTCT
TTCCCCCCCTCGTGGGCAGCGTGGGGGGCTCGGCAATGGCGTTCATTGCT
CCCCTGGGCTTTTTGTTCGTATGTACGCCTTTCGTGGACGTTTTAGGTAG
TAGTGTATACAAATATCAGCAGTCCAGCGTGCGAAAAAAGTCCAGGCGTT
TCATGTACGATGTCAAGGACATTGGTTGCAGGCTTCGTTGTGCCTCAGGG
AGGCAGAGTTTTTTTTTCCTCCTTGTCTCCGGCTGCACACGTACCTACGA
GGGGGGCGGCCCTTGCGATCTGTGCAACCACCCCTCGACCCTCGACTCAT
CTCGTCCCGTTTGCCAGTGCTCCCCCCGCGCTTGCCACGAACTCTCCATG
TCTTTCTTTCGTTTACCCATTTATGTACATATGTATGCACAAGATTGAGA
GCGTGCCTGCCGTTCCCGAAGTTTGTTTTTTTAAGTCTACAGCAACAGTA
GCTCTGTTTTTTTGCGGCGCACGCAGCCGCCCCCCCCCCCGCTTCCAAGA
CAAATGGGATGACATACGGACGGGCGGTGTTTGTAACTCCCGTGTATATA
TTGAACCCCTAAATGGACGACAACGCAAGCAAAGACAGCACCTGCCTACA
TACCTATACCCGTGTACGGATTGCGCTCGCACGACCGATGCAGGTGCCAC
CCGGAGGACATCGAGTCCAGCCCCACTCCCGCCCTCCAAGAGTGCGCCGG
GGCGATCAGAGAAGCCATCCGAGAGGACGGGGTGCCGGAGCAGTCGACGC
ACGAAGTGGTGTTCGTGGGCAGGCCCATGTGGGAGCTAGTGTCGCCGGTC
TTGGATTTCTCCGCGAAGGCTGCTTTCTCTGGGTGAAGGGGGGAGACGCG
GAGGGCTGGCTTGGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10952:1843..6059+

>mRNA_L-elsbetiae_contig10952.859.1 ID=mRNA_L-elsbetiae_contig10952.859.1|Name=mRNA_L-elsbetiae_contig10952.859.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1074bp|location=Sequence derived from alignment at L-elsbetiae_contig10952:1843..6059+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACGATGAAACGGCCATGGACGATGAAACGGCCGATGGGGGCCAGGT
GGCGGCGGGAACGATGCGGGATTTAACGGCCGGCCACAGCGAGTTTCTTG
CCAGAAGGATGGGGGCCAGGTGGCGGCGGGAACGATGCGGGATTTAACGG
CCGGCCACAGCGAGTTTCTTGCCAGAAGGGGCTTTGCCGCAGGCTTGGTG
TCGCATTTCTTGGAGGAGACGAACTGCGAGTTCAGGGTGCTGCAGGGGCT
TTGCCGCAGGCTTGGTGTCGCATTTCTTGGAGGAGACGAACTGCGAGTTC
AGGGTGCTGCAGGGAGGGACGTCTTGCGGCATGACCGCGCACCAGCTGCA
GGAGGCCGCTGTCCGGCTGGAGGAGGCGTTCGTGCCCGCCGTGAAACGCC
TGCGCGAGCGGGCTTCGATGGACGTGGTGCTCGACTCGCTCTTTGAGGGC
AAGGACGACGCCGGAGAGTTCGTCGTGCGCTTCGAGGTTTCCATCACCAG
GGAGGGACGTCTTGCGGCATGACCGCGCACCAGCTGCAGGAGGCCGCTGT
CCGGCTGGAGGAGGCGTTCGTGCCCGCCGTGAAACGCCTGCGCGAGCGGG
CTTCGATGGACGTGGTGCTCGACTCGCTCTTTGAGGGCAAGGACGACGCC
GGAGAGTTCGTCGTGCGCTTCGAGGTTTCCATCACCAGGTGCCACCCGGA
GGACATCGAGTCCAGCCCCACTCCCGCCCTCCAAGAGTGCGCCGGGGCGA
TCAGAGAAGCCATCCGAGAGGACGGGGTGCCGGAGCAGTCGACGCACGAA
GTGGTGTTCGTGGGCAGGCCCATGTGGGAGCTAGTGTCGCCGGTCTTGGA
TTTCTCCGCGAAGGCTGCTTTCTCTGGGTGAGTGCCACCCGGAGGACATC
GAGTCCAGCCCCACTCCCGCCCTCCAAGAGTGCGCCGGGGCGATCAGAGA
AGCCATCCGAGAGGACGGGGTGCCGGAGCAGTCGACGCACGAAGTGGTGT
TCGTGGGCAGGCCCATGTGGGAGCTAGTGTCGCCGGTCTTGGATTTCTCC
GCGAAGGCTGCTTTCTCTGGGTGA
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