mRNA_H-elongata_contig156951.3710.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig156951.3710.1
Unique NamemRNA_H-elongata_contig156951.3710.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig156951.3710.1 vs. uniprot
Match: D8LD89_ECTSI (Prenyltransferase, UbiA family, Putative 4-hydroxybenzoate octaprenyltransferase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD89_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 4.850e-15
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 1
Query:    1 HREILMDVSDVEGDRAAGIRTIPVLLGRQSAVAIALALLTAGVVAAGAGALSG 159
            HRE+LMD++DVEGDR AG+RT+PVL+GRQ+A+  A ALL+AGVVAAG G L G
Sbjct:  185 HREVLMDIADVEGDREAGVRTLPVLMGRQAALVFATALLSAGVVAAGVGILEG 237          
BLAST of mRNA_H-elongata_contig156951.3710.1 vs. uniprot
Match: A0A6H5LBF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBF2_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 5.570e-13
Identity = 35/53 (66.04%), Postives = 44/53 (83.02%), Query Frame = 1
Query:    1 HREILMDVSDVEGDRAAGIRTIPVLLGRQSAVAIALALLTAGVVAAGAGALSG 159
            HRE+LMD++DVEGDR AG+RT+PVL+GRQ+A+  A ALL+ GV AAG G L G
Sbjct:  303 HREVLMDIADVEGDREAGVRTLPVLMGRQAALVFATALLSVGVGAAGVGILEG 355          
BLAST of mRNA_H-elongata_contig156951.3710.1 vs. uniprot
Match: R1BDT7_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BDT7_EMIHU)

HSP 1 Score: 52.8 bits (125), Expect = 9.870e-7
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 1
Query:    1 HREILMDVSDVEGDRAAGIRTIPVLLGRQSAVAIALALLTA 123
            HRE+LMD+ DVEGD AAG+RT+PV LG  +A  +ALA L A
Sbjct:  126 HREVLMDIEDVEGDAAAGVRTLPVALGVGAAARLALAPLLA 166          
BLAST of mRNA_H-elongata_contig156951.3710.1 vs. uniprot
Match: A0A2R6GL77_9EURY (Digeranylgeranylglyceryl phosphate synthase n=2 Tax=unclassified Halobacteriales TaxID=38063 RepID=A0A2R6GL77_9EURY)

HSP 1 Score: 50.1 bits (118), Expect = 1.210e-5
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 1
Query:    4 REILMDVSDVEGDRAAGIRTIPVLLGRQSAVAIALALLTAGVVA 135
            REI+ DV DV GDR  G+RT+P++LGR+ A+A+A   + A VVA
Sbjct:  190 REIVKDVEDVAGDREEGLRTLPIVLGRRRALAVAAVFVVAAVVA 233          
BLAST of mRNA_H-elongata_contig156951.3710.1 vs. uniprot
Match: A0A2R6LSL2_9EURY (Digeranylgeranylglyceryl phosphate synthase n=2 Tax=unclassified Halobacteriales TaxID=38063 RepID=A0A2R6LSL2_9EURY)

HSP 1 Score: 49.7 bits (117), Expect = 1.610e-5
Identity = 23/44 (52.27%), Postives = 33/44 (75.00%), Query Frame = 1
Query:    4 REILMDVSDVEGDRAAGIRTIPVLLGRQSAVAIALALLTAGVVA 135
            REI+ DV D+ GDR  G+RT+P++LGR+ A+A+A   + A VVA
Sbjct:  171 REIVKDVEDIAGDREEGLRTLPIVLGRKRALAVAAGFVVAAVVA 214          
BLAST of mRNA_H-elongata_contig156951.3710.1 vs. uniprot
Match: A0A285P058_9EURY (Geranylgeranylglycerol-phosphate geranylgeranyltransferase n=1 Tax=Natronoarchaeum philippinense TaxID=558529 RepID=A0A285P058_9EURY)

HSP 1 Score: 49.3 bits (116), Expect = 2.230e-5
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 1
Query:    4 REILMDVSDVEGDRAAGIRTIPVLLGRQSAVAIALALLTAGVV 132
            REIL+DV DV GDRAAG+ T+PV LG +SA+ +A A L   V+
Sbjct:  177 REILLDVRDVRGDRAAGLTTLPVCLGERSALLVAAATLLLAVL 219          
BLAST of mRNA_H-elongata_contig156951.3710.1 vs. uniprot
Match: F8D4Q2_HALXS (Digeranylgeranylglyceryl phosphate synthase n=2 Tax=Halopiger TaxID=387342 RepID=F8D4Q2_HALXS)

HSP 1 Score: 49.3 bits (116), Expect = 2.240e-5
Identity = 22/44 (50.00%), Postives = 33/44 (75.00%), Query Frame = 1
Query:    4 REILMDVSDVEGDRAAGIRTIPVLLGRQSAVAIALALLTAGVVA 135
            REI+ DV D+EGDRA G+RT+P+ +G + A+A++  LL   V+A
Sbjct:  177 REIIKDVEDIEGDRAEGLRTLPIAIGERRAIALSAILLAIAVLA 220          
BLAST of mRNA_H-elongata_contig156951.3710.1 vs. uniprot
Match: A0A7S4MWR6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4MWR6_9EUKA)

HSP 1 Score: 49.3 bits (116), Expect = 2.350e-5
Identity = 22/46 (47.83%), Postives = 35/46 (76.09%), Query Frame = 1
Query:    1 HREILMDVSDVEGDRAAGIRTIPVLLGRQSAVAIALALLTAGVVAA 138
            HRE++MD+ D+EGD+ AG+RT+ V +G Q A+ +++  L AG +AA
Sbjct:  291 HREMVMDIKDLEGDQMAGVRTVAVAVGPQRALMLSMLPLAAGAIAA 336          
BLAST of mRNA_H-elongata_contig156951.3710.1 vs. uniprot
Match: A0A2R6F9L7_9EURY (Digeranylgeranylglyceryl phosphate synthase n=1 Tax=Halobacteriales archaeon QH_8_64_26 TaxID=1919162 RepID=A0A2R6F9L7_9EURY)

HSP 1 Score: 47.8 bits (112), Expect = 8.010e-5
Identity = 21/44 (47.73%), Postives = 35/44 (79.55%), Query Frame = 1
Query:    4 REILMDVSDVEGDRAAGIRTIPVLLGRQSAVAIALALLTAGVVA 135
            RE++ DV D+EGDR  G+RT+P++ G ++++A+ALA+L   V+A
Sbjct:  187 RELVKDVEDLEGDREEGLRTLPIVAGERTSLALALAVLALAVLA 230          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156951.3710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LD89_ECTSI4.850e-1569.81Prenyltransferase, UbiA family, Putative 4-hydroxy... [more]
A0A6H5LBF2_9PHAE5.570e-1366.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
R1BDT7_EMIHU9.870e-763.41Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A2R6GL77_9EURY1.210e-554.55Digeranylgeranylglyceryl phosphate synthase n=2 Ta... [more]
A0A2R6LSL2_9EURY1.610e-552.27Digeranylgeranylglyceryl phosphate synthase n=2 Ta... [more]
A0A285P058_9EURY2.230e-558.14Geranylgeranylglycerol-phosphate geranylgeranyltra... [more]
F8D4Q2_HALXS2.240e-550.00Digeranylgeranylglyceryl phosphate synthase n=2 Ta... [more]
A0A7S4MWR6_9EUKA2.350e-547.83Hypothetical protein (Fragment) n=1 Tax=Prymnesium... [more]
A0A2R6F9L7_9EURY8.010e-547.73Digeranylgeranylglyceryl phosphate synthase n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig156951contigH-elongata_contig156951:1167..1331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue1.8e-08
Seed eggNOG ortholog2880.D8LD89
EggNOG free text desc.UbiA prenyltransferase family
EggNOG OGs2CYY1@1,2S75T@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons1
Model size165
Cds size150
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929926.5792892-CDS-H-elongata_contig156951:1166..13161622929926.5792892-CDS-H-elongata_contig156951:1166..1316Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156951 1167..1316 -
1691679210.8619916-CDS-H-elongata_contig156951:1166..13161691679210.8619916-CDS-H-elongata_contig156951:1166..1316Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156951 1167..1316 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929926.5936027-UTR-H-elongata_contig156951:1316..13311622929926.5936027-UTR-H-elongata_contig156951:1316..1331Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig156951 1317..1331 -
1691679210.8788736-UTR-H-elongata_contig156951:1316..13311691679210.8788736-UTR-H-elongata_contig156951:1316..1331Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig156951 1317..1331 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig156951.3710.1prot_H-elongata_contig156951.3710.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig156951 1167..1316 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig156951.3710.1

>prot_H-elongata_contig156951.3710.1 ID=prot_H-elongata_contig156951.3710.1|Name=mRNA_H-elongata_contig156951.3710.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
MDVSDVEGDRAAGIRTIPVLLGRQSAVAIALALLTAGVVAAGAGALSGG*
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mRNA from alignment at H-elongata_contig156951:1167..1331-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig156951.3710.1 ID=mRNA_H-elongata_contig156951.3710.1|Name=mRNA_H-elongata_contig156951.3710.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig156951:1167..1331- (Himanthalia elongata Himel1 dioecious)
CATCGCGAGATTCTGATGGACGTCTCGGACGTAGAGGGAGACAGGGCGGC AGGGATACGAACCATTCCCGTGTTGCTAGGGCGACAGTCCGCCGTGGCCA TCGCGTTGGCGCTGCTCACCGCGGGGGTTGTTGCCGCCGGCGCAGGCGCT CTTTCGGGTGGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig156951:1167..1331-

>mRNA_H-elongata_contig156951.3710.1 ID=mRNA_H-elongata_contig156951.3710.1|Name=mRNA_H-elongata_contig156951.3710.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig156951:1167..1331- (Himanthalia elongata Himel1 dioecious)
ATGGACGTCTCGGACGTAGAGGGAGACAGGGCGGCAGGGATACGAACCAT
TCCCGTGTTGCTAGGGCGACAGTCCGCCGTGGCCATCGCGTTGGCGCTGC
TCACCGCGGGGGTTGTTGCCGCCGGCGCAGGCGCTCTTTCGGGTGGGTAG
ATGGACGTCTCGGACGTAGAGGGAGACAGGGCGGCAGGGATACGAACCAT
TCCCGTGTTGCTAGGGCGACAGTCCGCCGTGGCCATCGCGTTGGCGCTGC
TCACCGCGGGGGTTGTTGCCGCCGGCGCAGGCGCTCTTTCGGGTGGGTAG
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