mRNA_H-elongata_contig156951.3710.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig156951.3710.1 vs. uniprot
Match: D8LD89_ECTSI (Prenyltransferase, UbiA family, Putative 4-hydroxybenzoate octaprenyltransferase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD89_ECTSI) HSP 1 Score: 75.1 bits (183), Expect = 4.850e-15 Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 1
Query: 1 HREILMDVSDVEGDRAAGIRTIPVLLGRQSAVAIALALLTAGVVAAGAGALSG 159
HRE+LMD++DVEGDR AG+RT+PVL+GRQ+A+ A ALL+AGVVAAG G L G
Sbjct: 185 HREVLMDIADVEGDREAGVRTLPVLMGRQAALVFATALLSAGVVAAGVGILEG 237
BLAST of mRNA_H-elongata_contig156951.3710.1 vs. uniprot
Match: A0A6H5LBF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBF2_9PHAE) HSP 1 Score: 70.9 bits (172), Expect = 5.570e-13 Identity = 35/53 (66.04%), Postives = 44/53 (83.02%), Query Frame = 1
Query: 1 HREILMDVSDVEGDRAAGIRTIPVLLGRQSAVAIALALLTAGVVAAGAGALSG 159
HRE+LMD++DVEGDR AG+RT+PVL+GRQ+A+ A ALL+ GV AAG G L G
Sbjct: 303 HREVLMDIADVEGDREAGVRTLPVLMGRQAALVFATALLSVGVGAAGVGILEG 355
BLAST of mRNA_H-elongata_contig156951.3710.1 vs. uniprot
Match: R1BDT7_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BDT7_EMIHU) HSP 1 Score: 52.8 bits (125), Expect = 9.870e-7 Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 1
Query: 1 HREILMDVSDVEGDRAAGIRTIPVLLGRQSAVAIALALLTA 123
HRE+LMD+ DVEGD AAG+RT+PV LG +A +ALA L A
Sbjct: 126 HREVLMDIEDVEGDAAAGVRTLPVALGVGAAARLALAPLLA 166
BLAST of mRNA_H-elongata_contig156951.3710.1 vs. uniprot
Match: A0A2R6GL77_9EURY (Digeranylgeranylglyceryl phosphate synthase n=2 Tax=unclassified Halobacteriales TaxID=38063 RepID=A0A2R6GL77_9EURY) HSP 1 Score: 50.1 bits (118), Expect = 1.210e-5 Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 1
Query: 4 REILMDVSDVEGDRAAGIRTIPVLLGRQSAVAIALALLTAGVVA 135
REI+ DV DV GDR G+RT+P++LGR+ A+A+A + A VVA
Sbjct: 190 REIVKDVEDVAGDREEGLRTLPIVLGRRRALAVAAVFVVAAVVA 233
BLAST of mRNA_H-elongata_contig156951.3710.1 vs. uniprot
Match: A0A2R6LSL2_9EURY (Digeranylgeranylglyceryl phosphate synthase n=2 Tax=unclassified Halobacteriales TaxID=38063 RepID=A0A2R6LSL2_9EURY) HSP 1 Score: 49.7 bits (117), Expect = 1.610e-5 Identity = 23/44 (52.27%), Postives = 33/44 (75.00%), Query Frame = 1
Query: 4 REILMDVSDVEGDRAAGIRTIPVLLGRQSAVAIALALLTAGVVA 135
REI+ DV D+ GDR G+RT+P++LGR+ A+A+A + A VVA
Sbjct: 171 REIVKDVEDIAGDREEGLRTLPIVLGRKRALAVAAGFVVAAVVA 214
BLAST of mRNA_H-elongata_contig156951.3710.1 vs. uniprot
Match: A0A285P058_9EURY (Geranylgeranylglycerol-phosphate geranylgeranyltransferase n=1 Tax=Natronoarchaeum philippinense TaxID=558529 RepID=A0A285P058_9EURY) HSP 1 Score: 49.3 bits (116), Expect = 2.230e-5 Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 1
Query: 4 REILMDVSDVEGDRAAGIRTIPVLLGRQSAVAIALALLTAGVV 132
REIL+DV DV GDRAAG+ T+PV LG +SA+ +A A L V+
Sbjct: 177 REILLDVRDVRGDRAAGLTTLPVCLGERSALLVAAATLLLAVL 219
BLAST of mRNA_H-elongata_contig156951.3710.1 vs. uniprot
Match: F8D4Q2_HALXS (Digeranylgeranylglyceryl phosphate synthase n=2 Tax=Halopiger TaxID=387342 RepID=F8D4Q2_HALXS) HSP 1 Score: 49.3 bits (116), Expect = 2.240e-5 Identity = 22/44 (50.00%), Postives = 33/44 (75.00%), Query Frame = 1
Query: 4 REILMDVSDVEGDRAAGIRTIPVLLGRQSAVAIALALLTAGVVA 135
REI+ DV D+EGDRA G+RT+P+ +G + A+A++ LL V+A
Sbjct: 177 REIIKDVEDIEGDRAEGLRTLPIAIGERRAIALSAILLAIAVLA 220
BLAST of mRNA_H-elongata_contig156951.3710.1 vs. uniprot
Match: A0A7S4MWR6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4MWR6_9EUKA) HSP 1 Score: 49.3 bits (116), Expect = 2.350e-5 Identity = 22/46 (47.83%), Postives = 35/46 (76.09%), Query Frame = 1
Query: 1 HREILMDVSDVEGDRAAGIRTIPVLLGRQSAVAIALALLTAGVVAA 138
HRE++MD+ D+EGD+ AG+RT+ V +G Q A+ +++ L AG +AA
Sbjct: 291 HREMVMDIKDLEGDQMAGVRTVAVAVGPQRALMLSMLPLAAGAIAA 336
BLAST of mRNA_H-elongata_contig156951.3710.1 vs. uniprot
Match: A0A2R6F9L7_9EURY (Digeranylgeranylglyceryl phosphate synthase n=1 Tax=Halobacteriales archaeon QH_8_64_26 TaxID=1919162 RepID=A0A2R6F9L7_9EURY) HSP 1 Score: 47.8 bits (112), Expect = 8.010e-5 Identity = 21/44 (47.73%), Postives = 35/44 (79.55%), Query Frame = 1
Query: 4 REILMDVSDVEGDRAAGIRTIPVLLGRQSAVAIALALLTAGVVA 135
RE++ DV D+EGDR G+RT+P++ G ++++A+ALA+L V+A
Sbjct: 187 RELVKDVEDLEGDREEGLRTLPIVAGERTSLALALAVLALAVLA 230 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156951.3710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig156951.3710.1 >prot_H-elongata_contig156951.3710.1 ID=prot_H-elongata_contig156951.3710.1|Name=mRNA_H-elongata_contig156951.3710.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp MDVSDVEGDRAAGIRTIPVLLGRQSAVAIALALLTAGVVAAGAGALSGG*back to top mRNA from alignment at H-elongata_contig156951:1167..1331- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig156951.3710.1 ID=mRNA_H-elongata_contig156951.3710.1|Name=mRNA_H-elongata_contig156951.3710.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig156951:1167..1331- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig156951:1167..1331- >mRNA_H-elongata_contig156951.3710.1 ID=mRNA_H-elongata_contig156951.3710.1|Name=mRNA_H-elongata_contig156951.3710.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig156951:1167..1331- (Himanthalia elongata Himel1 dioecious)back to top |