prot_H-elongata_contig156951.3710.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig156951.3710.1
Unique Nameprot_H-elongata_contig156951.3710.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length50
Homology
[Close]
BLAST of mRNA_H-elongata_contig156951.3710.1 vs. uniprot
Match: D8LD89_ECTSI (Prenyltransferase, UbiA family, Putative 4-hydroxybenzoate octaprenyltransferase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD89_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 2.370e-11
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = 0 
Query:    1 MDVSDVEGDRAAGIRTIPVLLGRQSAVAIALALLTAGVVAAGAGALSG 48
            MD++DVEGDR AG+RT+PVL+GRQ+A+  A ALL+AGVVAAG G L G
Sbjct:  190 MDIADVEGDREAGVRTLPVLMGRQAALVFATALLSAGVVAAGVGILEG 237
[Close]
BLAST of mRNA_H-elongata_contig156951.3710.1 vs. uniprot
Match: A0A6H5LBF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBF2_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.580e-9
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 0 
Query:    1 MDVSDVEGDRAAGIRTIPVLLGRQSAVAIALALLTAGVVAAGAGALSG 48
            MD++DVEGDR AG+RT+PVL+GRQ+A+  A ALL+ GV AAG G L G
Sbjct:  308 MDIADVEGDREAGVRTLPVLMGRQAALVFATALLSVGVGAAGVGILEG 355
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156951.3710.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LD89_ECTSI2.370e-1168.75Prenyltransferase, UbiA family, Putative 4-hydroxy... [more]
A0A6H5LBF2_9PHAE1.580e-964.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000537UbiA prenyltransferase familyPFAMPF01040UbiAcoord: 2..42
e-value: 1.3E-8
score: 34.5
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..25
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 47..49
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 26..46
NoneNo IPR availableTMHMMTMhelixcoord: 26..48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig156951contigH-elongata_contig156951:1167..1316 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig156951.3710.1mRNA_H-elongata_contig156951.3710.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig156951 1167..1331 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig156951.3710.1 ID=prot_H-elongata_contig156951.3710.1|Name=mRNA_H-elongata_contig156951.3710.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
MDVSDVEGDRAAGIRTIPVLLGRQSAVAIALALLTAGVVAAGAGALSGG*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000537UbiA_prenyltransferase