mRNA_H-elongata_contig149927.3340.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig149927.3340.1
Unique NamemRNA_H-elongata_contig149927.3340.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig149927.3340.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN)

HSP 1 Score: 224 bits (571), Expect = 4.530e-63
Identity = 127/290 (43.79%), Postives = 169/290 (58.28%), Query Frame = 1
Query:    4 YAQRPHTRRGPSTPESRRLRAAKLALERGGITKAASALVSLDAAPRNGITLDILQGKHPREDPAAIAEA-------------------KIEQPFEPSAIGDAIRKFDPQSAPGPSGLRHCHLQDVRDDELEVDIARLSRTIFKSETLPPLFWTLHTGANLSTLGAKARPVACGDVFRRIIGETFCSDYSKQLVGNFEPKGEHGVACPGGVDLMTRAVSLGFAEGCIILSFDGKNSFNSIYRHEFLPALATVVPVVSGYAANLYARDPPKLLFAMDNGTTAVIDSARGVQQ 816
            YA++P          S+  RA  LA +RGG++KAAS L++  + PRN  TL+ L+ KHP E    IAEA                    +E+PF    +   IR+ +PQ +PGPSGLR   LQ     EL   IA+L   IF    LP  FW LHT ANLS +G K RP+A GD+FRRI+G   C  Y   L  +FEP+G++GVA PGG +L+     L   +G  +L++D +N+FNS+ R   LPALA ++P +  YA N+YAR+PPKLL+  D+G  AVI SA GVQQ
Sbjct: 1065 YAKQPTRSPRQGEEASKHARAEHLAHQRGGLSKAASTLLAPPSPPRNAETLETLRKKHPGESQQEIAEACCEATARLSRPPPGVSRIEAVEEPFATETVTATIRRGNPQGSPGPSGLRFSLLQSSLTPELCEAIAKLCSVIFDGSHLPDSFWQLHTSANLSAIGDKCRPIAVGDLFRRIVGGVICRQYGPSLAEHFEPQGQYGVAVPGGTELLAARAFLAHQKGQCLLAYDARNAFNSMKRSAILPALADLIPPMLPYATNIYAREPPKLLYKTDSGM-AVIPSATGVQQ 1353          
BLAST of mRNA_H-elongata_contig149927.3340.1 vs. uniprot
Match: A0A6H5KQ62_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ62_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 6.810e-61
Identity = 127/295 (43.05%), Postives = 165/295 (55.93%), Query Frame = 1
Query:    1 MYAQRPHTRRGPSTPESRRLRAAKLALERGGITKAASALVSLDAAPRNGITLDILQGKHPREDPAAIAEA---------------KIE------QPFEPSAIGDAIRKFDPQSAPGPSGLRHCHLQ-DVRDDELEVDIARLSRTIFK-SETLPPLFWTLHTGANLSTLGAKARPVACGDVFRRIIGETFCSDYSKQLVGNFEPKGEHGVACPGGVDLMTRAVSLGFAEGCIILSFDGKNSFNSIYRHEFLPALATVVPVVSGYAANLYARDPPKLLFAMDNGTTAVIDSARGVQQ 816
            MY +    +    T ++R+ RA +LA E GGITKAASAL+S   +PRN  TL+ L+  HP EDP  IA A               KI+      +PFE   I   ++K +PQSAPGP GLR  +LQ     D     +A  S  +F   + LP  FW LHT ANLS LG K RP+A G V RRII  +FC  Y   +   FE   + G   PGGV+++    +L   +G  ILSFDGKN++NS+ R   LPA+AT  P +  Y  N+YAR   KLLF M++G+  V+ S RGVQQ
Sbjct:   24 MYEKNRRLQYYADTEDNRQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRIETHKIDSVAEPDEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQ 318          
BLAST of mRNA_H-elongata_contig149927.3340.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 4.470e-59
Identity = 125/295 (42.37%), Postives = 164/295 (55.59%), Query Frame = 1
Query:    1 MYAQRPHTRRGPSTPESRRLRAAKLALERGGITKAASALVSLDAAPRNGITLDILQGKHPREDPAAIAEA---------------------KIEQPFEPSAIGDAIRKFDPQSAPGPSGLRHCHLQ-DVRDDELEVDIARLSRTIFK-SETLPPLFWTLHTGANLSTLGAKARPVACGDVFRRIIGETFCSDYSKQLVGNFEPKGEHGVACPGGVDLMTRAVSLGFAEGCIILSFDGKNSFNSIYRHEFLPALATVVPVVSGYAANLYARDPPKLLFAMDNGTTAVIDSARGVQQ 816
            MY +    +    T ++R+ RA +LA E GGITKAASAL+S   +PRN  TL+ L+  HP EDP  IA A                     + ++PFE   I   ++K +PQSAPGP GLR  +LQ     D     +A  S  +F   + LP  FW LHT ANLS LG K RP+A G V RRII  +FC  Y   +   FE   + G   PGGV+++    +L   +G  ILSFDGKN++NS+ R   LPA+AT  P +  Y  N+YAR   KLLF M++G+  V+ S RGVQQ
Sbjct:   24 MYEKNRRLQYYADTEDNRQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRIKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCHQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQ 318          
BLAST of mRNA_H-elongata_contig149927.3340.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 3.050e-58
Identity = 126/295 (42.71%), Postives = 164/295 (55.59%), Query Frame = 1
Query:    1 MYAQRPHTRRGPSTPESRRLRAAKLALERGGITKAASALVSLDAAPRNGITLDILQGKHPREDPAAIAEA---------------------KIEQPFEPSAIGDAIRKFDPQSAPGPSGLRHCHLQ-DVRDDELEVDIARLSRTIFK-SETLPPLFWTLHTGANLSTLGAKARPVACGDVFRRIIGETFCSDYSKQLVGNFEPKGEHGVACPGGVDLMTRAVSLGFAEGCIILSFDGKNSFNSIYRHEFLPALATVVPVVSGYAANLYARDPPKLLFAMDNGTTAVIDSARGVQQ 816
            MY +    R    T ++R+ RA +LA E GGITKAASAL+S   +PRN  TL+ L+  HP EDP  IA A                     + ++PFE   I   ++K +PQSAPGP GLR  +LQ     D     +A  S  +F   + LP  FW LHT ANLS LG K RP+A G V RRII  +FC  Y   +   FE   + G   PGGV+++    +L   +G  ILSFDGKN++NS+ R   LPA+AT  P +  Y  N+YAR   KLLF M++G+  V+ S RGVQQ
Sbjct:   24 MYEKNRRLRYYADTEDNRQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKVAGDRIKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDSFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQ 318          
BLAST of mRNA_H-elongata_contig149927.3340.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 8.280e-58
Identity = 125/295 (42.37%), Postives = 164/295 (55.59%), Query Frame = 1
Query:    1 MYAQRPHTRRGPSTPESRRLRAAKLALERGGITKAASALVSLDAAPRNGITLDILQGKHPREDPAAIAEA---------------------KIEQPFEPSAIGDAIRKFDPQSAPGPSGLRHCHLQ-DVRDDELEVDIARLSRTIFK-SETLPPLFWTLHTGANLSTLGAKARPVACGDVFRRIIGETFCSDYSKQLVGNFEPKGEHGVACPGGVDLMTRAVSLGFAEGCIILSFDGKNSFNSIYRHEFLPALATVVPVVSGYAANLYARDPPKLLFAMDNGTTAVIDSARGVQQ 816
            MY +    +    T ++R+ RA +LA E GGITKAASAL+S   +PRN  TL+ L+  HP EDP  IA A                     + ++PFE   I   ++K +PQSAPGP GLR  +LQ     D     +A  S  +F   + LP  FW LHT ANLS LG K RP+A G V RRII  +FC  Y   +   FE   + G   PGGV+++    +L   +G  ILSFDGKN++NS+ R   LPA+AT  P +  Y  N+YAR   KLLF M++G+  V+ S RGVQQ
Sbjct:   24 MYEKNRRLQYYADTEDNRQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRIKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQ 318          
BLAST of mRNA_H-elongata_contig149927.3340.1 vs. uniprot
Match: A0A6H5KSY9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY9_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 1.140e-35
Identity = 70/152 (46.05%), Postives = 93/152 (61.18%), Query Frame = 1
Query:  361 RTIFKSETLPPLFWTLHTGANLSTLGAKARPVACGDVFRRIIGETFCSDYSKQLVGNFEPKGEHGVACPGGVDLMTRAVSLGFAEGCIILSFDGKNSFNSIYRHEFLPALATVVPVVSGYAANLYARDPPKLLFAMDNGTTAVIDSARGVQQ 816
            +  +  + LP  FW LHT ANLS LG K RP+A G V RRII  +FC  Y   +   FE   + G   PGGV+++    +L   +G  ILSFDGKN++NS+ R   LPA+AT  P ++ Y  N+YAR   KLLF M++G+  V+ S RGVQQ
Sbjct:   15 KVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLAKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQ 166          
BLAST of mRNA_H-elongata_contig149927.3340.1 vs. uniprot
Match: A0A6H5L3H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H3_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 2.110e-34
Identity = 70/164 (42.68%), Postives = 95/164 (57.93%), Query Frame = 1
Query:  328 DELEVDIARLSRTIFK-SETLPPLFWTLHTGANLSTLGAKARPVACGDVFRRIIGETFCSDYSKQLVGNFEPKGEHGVACPGGVDLMTRAVSLGFAEGCIILSFDGKNSFNSIYRHEFLPALATVVPVVSGYAANLYARDPPKLLFAMDNGTTAVIDSARGVQQ 816
            D+    +A  S  +F   + LP LFW   T A+LS LG K RP+A G V RRII  +FC  Y + +   FE   + G   PGGV+++    +L   +G  ILSFDG+N++NSI R   L A+AT  P +  Y  NLYAR   KLLF M++G+  ++ S R VQQ
Sbjct:    3 DDFSETLADFSYKVFYYGDELPDLFWGFQTSASLSALGEKKRPIAVGGVLRRIISGSFCRQYKQGIADIFEASNQFGGGVPGGVEIVASTAALSHQQGSTILSFDGRNAYNSILRSSILTAVATHTPHLVKYFGNLYARIKAKLLFKMEDGSIEMVRSQREVQQ 166          
BLAST of mRNA_H-elongata_contig149927.3340.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 1.250e-32
Identity = 68/152 (44.74%), Postives = 91/152 (59.87%), Query Frame = 1
Query:  361 RTIFKSETLPPLFWTLHTGANLSTLGAKARPVACGDVFRRIIGETFCSDYSKQLVGNFEPKGEHGVACPGGVDLMTRAVSLGFAEGCIILSFDGKNSFNSIYRHEFLPALATVVPVVSGYAANLYARDPPKLLFAMDNGTTAVIDSARGVQQ 816
            +  +  + LP   W LHT ANLS LG K RP+A G V RRII  +F   Y   +   FE   + G   PGGV+++    +L   +G  ILSFDGKN++NS+ R   LPA+AT+ P +  Y  N+YAR   KLLF M++G+  V+ S RGVQQ
Sbjct:   15 KVFYYGDELPDFLWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFYRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATLTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQ 166          
BLAST of mRNA_H-elongata_contig149927.3340.1 vs. uniprot
Match: A0A6H5KQE6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE6_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.120e-20
Identity = 53/135 (39.26%), Postives = 71/135 (52.59%), Query Frame = 1
Query:  328 DELEVDIARLSRTIFK-SETLPPLFWTLHTGANLSTLGAKARPVACGDVFRRII------------GETFCSDYSKQLVGNFEPKGEHGVACPGGVDLMTRAVSLGFAEGCIILSFDGKNSFNSIYRHEFLPALA 693
            D+    +A  S  +F   + LP LFW LHT A+LS LG K RP+A G V RRII              +FC  Y + +   FE   + G   PGGV+++    +    +G  ILSFDGKN++NSI R   L A+A
Sbjct:    3 DDFSATLADFSHKVFYYGDELPDLFWGLHTSASLSALGEKKRPIAVGGVLRRIIXIXXXXXXXXXISGSFCRQYKQGIADIFEASNQFGGGVPGGVEIVASTAAPSHQQGSTILSFDGKNAYNSILRSSILTAVA 137          
BLAST of mRNA_H-elongata_contig149927.3340.1 vs. uniprot
Match: A0A812N9S6_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812N9S6_9DINO)

HSP 1 Score: 98.2 bits (243), Expect = 1.390e-19
Identity = 89/286 (31.12%), Postives = 126/286 (44.06%), Query Frame = 1
Query:   16 PHTRRGPSTP--ESRRLRAAKLALERGGITKAASALVSLDAAPRNGITLDILQGKHPREDPAAIAEAKIEQP-----FEPSAIGDAIRKFDPQSAPGPSGLRHCHLQD----VRDDELEVDIARLSRTIFKSETLPPLFWTLHTGANLSTLGAK---ARPVACGDVFRRIIGETFCSDYSKQLVGNFEPKGEHGVACPGGVDLMTRAV-----SLGFAEGCIILSFDGKNSFNSIYRHEFLPALATVVPVVSGYAANLYARDPPKLLFAMDNGTTAVIDSARGVQQ 816
            P  R GP+    E+R  R  +LA E G + +A  AL+     PR+  TL  LQ KHP+     +A     +P     F   A+  A+R F   SAPGPSGLR  HL++       DE+ V +A L   + + E  P        GA L  L       RP+A G+V RR++G+  C    +       P  + GV  P G +    A      S    E  +++  D +N+FN++ R   L      VP VS +A   Y +   +L F        V+ S  GVQQ
Sbjct:  102 PRQRSGPTRQSLEARHSRCRRLAAE-GDLARACDALLQEPPLPRDAATLAALQAKHPQSPLPDLAALGAPRPGAVPEFSAEAVAKAVRSFKRASAPGPSGLRPDHLRESLSTAHADEVAVHLAALCHLLARGEA-PATLAPHLAGATLHALPKPQGGVRPIAIGEVLRRLVGKLLCGSVREAARDQLWPL-QVGVGVPSGSEAAVHAARHWLQSHSGHENRVLVKLDFRNAFNAVSRASVLREARARVPEVSSWADWCYGQSS-RLRFGKH-----VVASTSGVQQ 378          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig149927.3340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P0N5L4_9CYAN4.530e-6343.79Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 Ta... [more]
A0A6H5KQ62_9PHAE6.810e-6143.05Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KGJ4_9PHAE4.470e-5942.37Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LN63_9PHAE3.050e-5842.71Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JCM0_9PHAE8.280e-5842.37Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KSY9_9PHAE1.140e-3546.05Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L3H3_9PHAE2.110e-3442.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1H0_9PHAE1.250e-3244.74Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KQE6_9PHAE1.120e-2039.26Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A812N9S6_9DINO1.390e-1931.12Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig149927contigH-elongata_contig149927:22..897 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue5.1e-12
Seed eggNOG ortholog400682.PAC_15708731
Preferred nameCWC27
KEGG koko:K01802,ko:K12737
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005911,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009506,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0030054,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0055044,GO:0070013,GO:0071012,GO:0071013,GO:0071704,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1902494,GO:1990904
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0885@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03041,ko03110
Hectar predicted targeting categoryother localisation
Exons2
Model size816
Cds size816
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929887.4137986-CDS-H-elongata_contig149927:21..6241622929887.4137986-CDS-H-elongata_contig149927:21..624Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149927 22..624 -
1691679195.8457065-CDS-H-elongata_contig149927:21..6241691679195.8457065-CDS-H-elongata_contig149927:21..624Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149927 22..624 -
1622929887.429623-CDS-H-elongata_contig149927:684..8971622929887.429623-CDS-H-elongata_contig149927:684..897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149927 685..897 -
1691679195.858026-CDS-H-elongata_contig149927:684..8971691679195.858026-CDS-H-elongata_contig149927:684..897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149927 685..897 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig149927.3340.1prot_H-elongata_contig149927.3340.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig149927 22..897 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig149927.3340.1

>prot_H-elongata_contig149927.3340.1 ID=prot_H-elongata_contig149927.3340.1|Name=mRNA_H-elongata_contig149927.3340.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=272bp
MYAQRPHTRRGPSTPESRRLRAAKLALERGGITKAASALVSLDAAPRNGI
TLDILQGKHPREDPAAIAEAKIEQPFEPSAIGDAIRKFDPQSAPGPSGLR
HCHLQDVRDDELEVDIARLSRTIFKSETLPPLFWTLHTGANLSTLGAKAR
PVACGDVFRRIIGETFCSDYSKQLVGNFEPKGEHGVACPGGVDLMTRAVS
LGFAEGCIILSFDGKNSFNSIYRHEFLPALATVVPVVSGYAANLYARDPP
KLLFAMDNGTTAVIDSARGVQQ
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mRNA from alignment at H-elongata_contig149927:22..897-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig149927.3340.1 ID=mRNA_H-elongata_contig149927.3340.1|Name=mRNA_H-elongata_contig149927.3340.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=876bp|location=Sequence derived from alignment at H-elongata_contig149927:22..897- (Himanthalia elongata Himel1 dioecious)
ATGTACGCGCAACGGCCCCACACAAGGCGAGGACCGAGCACGCCCGAAAG CCGCCGGCTGCGAGCGGCGAAGTTGGCGCTCGAGCGGGGAGGGATCACCA AGGCAGCAAGTGCACTCGTATCCCTCGACGCGGCCCCGAGAAACGGAATC ACTCTGGACATTCTGCAAGGCAAGCACCCCAGGGAGGACCCCGCCGCCAT CGCGGAAGCCAAAGTGAGGGCCGAGAAGTACGTCCACGTGCCGCCGGAGG GGACACCGCCCCCAATCGCCGAGATCGAACAACCCTTCGAGCCAAGCGCT ATCGGCGATGCCATCAGGAAGTTCGACCCTCAGAGTGCGCCCGGTCCATC GGGTCTGCGCCACTGCCACCTGCAGGACGTACGGGACGACGAATTGGAGG TAGACATCGCCAGGCTGTCACGCACCATCTTCAAGAGCGAAACCTTACCG CCCCTGTTTTGGACACTTCACACAGGCGCTAACCTTTCTACGCTGGGAGC AAAAGCGAGGCCGGTTGCGTGCGGCGACGTCTTTCGCCGGATTATCGGAG AAACTTTCTGCAGCGACTACAGCAAGCAGTTGGTCGGGAACTTCGAGCCG AAGGGGGAGCATGGCGTCGCCTGCCCAGGTGGAGTCGATCTCATGACTCG GGCGGTCAGCCTCGGCTTTGCCGAGGGGTGCATCATTCTGTCATTCGACG GTAAGAATTCGTTCAACTCAATCTACCGCCACGAGTTCTTACCGGCCCTG GCAACGGTGGTCCCGGTGGTATCCGGTTACGCTGCGAACCTGTACGCACG AGATCCGCCCAAGCTACTCTTCGCGATGGACAACGGCACTACGGCGGTCA TCGACTCGGCCCGAGGAGTGCAGCAA
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Coding sequence (CDS) from alignment at H-elongata_contig149927:22..897-

>mRNA_H-elongata_contig149927.3340.1 ID=mRNA_H-elongata_contig149927.3340.1|Name=mRNA_H-elongata_contig149927.3340.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1632bp|location=Sequence derived from alignment at H-elongata_contig149927:22..897- (Himanthalia elongata Himel1 dioecious)
ATGTACGCGCAACGGCCCCACACAAGGCGAGGACCGAGCACGCCCGAAAG
CCGCCGGCTGCGAGCGGCGAAGTTGGCGCTCGAGCGGGGAGGGATCACCA
AGGCAGCAAGTGCACTCGTATCCCTCGACGCGGCCCCGAGAAACGGAATC
ACTCTGGACATTCTGCAAGGCAAGCACCCCAGGGAGGACCCCGCCGCCAT
CGCGGAAGCCAAAATGTACGCGCAACGGCCCCACACAAGGCGAGGACCGA
GCACGCCCGAAAGCCGCCGGCTGCGAGCGGCGAAGTTGGCGCTCGAGCGG
GGAGGGATCACCAAGGCAGCAAGTGCACTCGTATCCCTCGACGCGGCCCC
GAGAAACGGAATCACTCTGGACATTCTGCAAGGCAAGCACCCCAGGGAGG
ACCCCGCCGCCATCGCGGAAGCCAAAATCGAACAACCCTTCGAGCCAAGC
GCTATCGGCGATGCCATCAGGAAGTTCGACCCTCAGAGTGCGCCCGGTCC
ATCGGGTCTGCGCCACTGCCACCTGCAGGACGTACGGGACGACGAATTGG
AGGTAGACATCGCCAGGCTGTCACGCACCATCTTCAAGAGCGAAACCTTA
CCGCCCCTGTTTTGGACACTTCACACAGGCGCTAACCTTTCTACGCTGGG
AGCAAAAGCGAGGCCGGTTGCGTGCGGCGACGTCTTTCGCCGGATTATCG
GAGAAACTTTCTGCAGCGACTACAGCAAGCAGTTGGTCGGGAACTTCGAG
CCGAAGGGGGAGCATGGCGTCGCCTGCCCAGGTGGAGTCGATCTCATGAC
TCGGGCGGTCAGCCTCGGCTTTGCCGAGGGGTGCATCATTCTGTCATTCG
ACGGTAAGAATTCGTTCAACTCAATCTACCGCCACGAGTTCTTACCGGCC
CTGGCAACGGTGGTCCCGGTGGTATCCGGTTACGCTGCGAACCTGTACGC
ACGAGATCCGCCCAAGCTACTCTTCGCGATGGACAACGGCACTACGGCGG
TCATCGACTCGGCCCGAGGAGTGCAGCAAATCGAACAACCCTTCGAGCCA
AGCGCTATCGGCGATGCCATCAGGAAGTTCGACCCTCAGAGTGCGCCCGG
TCCATCGGGTCTGCGCCACTGCCACCTGCAGGACGTACGGGACGACGAAT
TGGAGGTAGACATCGCCAGGCTGTCACGCACCATCTTCAAGAGCGAAACC
TTACCGCCCCTGTTTTGGACACTTCACACAGGCGCTAACCTTTCTACGCT
GGGAGCAAAAGCGAGGCCGGTTGCGTGCGGCGACGTCTTTCGCCGGATTA
TCGGAGAAACTTTCTGCAGCGACTACAGCAAGCAGTTGGTCGGGAACTTC
GAGCCGAAGGGGGAGCATGGCGTCGCCTGCCCAGGTGGAGTCGATCTCAT
GACTCGGGCGGTCAGCCTCGGCTTTGCCGAGGGGTGCATCATTCTGTCAT
TCGACGGTAAGAATTCGTTCAACTCAATCTACCGCCACGAGTTCTTACCG
GCCCTGGCAACGGTGGTCCCGGTGGTATCCGGTTACGCTGCGAACCTGTA
CGCACGAGATCCGCCCAAGCTACTCTTCGCGATGGACAACGGCACTACGG
CGGTCATCGACTCGGCCCGAGGAGTGCAGCAA
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