mRNA_H-elongata_contig149927.3340.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig149927.3340.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN) HSP 1 Score: 224 bits (571), Expect = 4.530e-63 Identity = 127/290 (43.79%), Postives = 169/290 (58.28%), Query Frame = 1
Query: 4 YAQRPHTRRGPSTPESRRLRAAKLALERGGITKAASALVSLDAAPRNGITLDILQGKHPREDPAAIAEA-------------------KIEQPFEPSAIGDAIRKFDPQSAPGPSGLRHCHLQDVRDDELEVDIARLSRTIFKSETLPPLFWTLHTGANLSTLGAKARPVACGDVFRRIIGETFCSDYSKQLVGNFEPKGEHGVACPGGVDLMTRAVSLGFAEGCIILSFDGKNSFNSIYRHEFLPALATVVPVVSGYAANLYARDPPKLLFAMDNGTTAVIDSARGVQQ 816
YA++P S+ RA LA +RGG++KAAS L++ + PRN TL+ L+ KHP E IAEA +E+PF + IR+ +PQ +PGPSGLR LQ EL IA+L IF LP FW LHT ANLS +G K RP+A GD+FRRI+G C Y L +FEP+G++GVA PGG +L+ L +G +L++D +N+FNS+ R LPALA ++P + YA N+YAR+PPKLL+ D+G AVI SA GVQQ
Sbjct: 1065 YAKQPTRSPRQGEEASKHARAEHLAHQRGGLSKAASTLLAPPSPPRNAETLETLRKKHPGESQQEIAEACCEATARLSRPPPGVSRIEAVEEPFATETVTATIRRGNPQGSPGPSGLRFSLLQSSLTPELCEAIAKLCSVIFDGSHLPDSFWQLHTSANLSAIGDKCRPIAVGDLFRRIVGGVICRQYGPSLAEHFEPQGQYGVAVPGGTELLAARAFLAHQKGQCLLAYDARNAFNSMKRSAILPALADLIPPMLPYATNIYAREPPKLLYKTDSGM-AVIPSATGVQQ 1353
BLAST of mRNA_H-elongata_contig149927.3340.1 vs. uniprot
Match: A0A6H5KQ62_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ62_9PHAE) HSP 1 Score: 206 bits (525), Expect = 6.810e-61 Identity = 127/295 (43.05%), Postives = 165/295 (55.93%), Query Frame = 1
Query: 1 MYAQRPHTRRGPSTPESRRLRAAKLALERGGITKAASALVSLDAAPRNGITLDILQGKHPREDPAAIAEA---------------KIE------QPFEPSAIGDAIRKFDPQSAPGPSGLRHCHLQ-DVRDDELEVDIARLSRTIFK-SETLPPLFWTLHTGANLSTLGAKARPVACGDVFRRIIGETFCSDYSKQLVGNFEPKGEHGVACPGGVDLMTRAVSLGFAEGCIILSFDGKNSFNSIYRHEFLPALATVVPVVSGYAANLYARDPPKLLFAMDNGTTAVIDSARGVQQ 816
MY + + T ++R+ RA +LA E GGITKAASAL+S +PRN TL+ L+ HP EDP IA A KI+ +PFE I ++K +PQSAPGP GLR +LQ D +A S +F + LP FW LHT ANLS LG K RP+A G V RRII +FC Y + FE + G PGGV+++ +L +G ILSFDGKN++NS+ R LPA+AT P + Y N+YAR KLLF M++G+ V+ S RGVQQ
Sbjct: 24 MYEKNRRLQYYADTEDNRQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRIETHKIDSVAEPDEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQ 318
BLAST of mRNA_H-elongata_contig149927.3340.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE) HSP 1 Score: 207 bits (527), Expect = 4.470e-59 Identity = 125/295 (42.37%), Postives = 164/295 (55.59%), Query Frame = 1
Query: 1 MYAQRPHTRRGPSTPESRRLRAAKLALERGGITKAASALVSLDAAPRNGITLDILQGKHPREDPAAIAEA---------------------KIEQPFEPSAIGDAIRKFDPQSAPGPSGLRHCHLQ-DVRDDELEVDIARLSRTIFK-SETLPPLFWTLHTGANLSTLGAKARPVACGDVFRRIIGETFCSDYSKQLVGNFEPKGEHGVACPGGVDLMTRAVSLGFAEGCIILSFDGKNSFNSIYRHEFLPALATVVPVVSGYAANLYARDPPKLLFAMDNGTTAVIDSARGVQQ 816
MY + + T ++R+ RA +LA E GGITKAASAL+S +PRN TL+ L+ HP EDP IA A + ++PFE I ++K +PQSAPGP GLR +LQ D +A S +F + LP FW LHT ANLS LG K RP+A G V RRII +FC Y + FE + G PGGV+++ +L +G ILSFDGKN++NS+ R LPA+AT P + Y N+YAR KLLF M++G+ V+ S RGVQQ
Sbjct: 24 MYEKNRRLQYYADTEDNRQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRIKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCHQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQ 318
BLAST of mRNA_H-elongata_contig149927.3340.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE) HSP 1 Score: 210 bits (534), Expect = 3.050e-58 Identity = 126/295 (42.71%), Postives = 164/295 (55.59%), Query Frame = 1
Query: 1 MYAQRPHTRRGPSTPESRRLRAAKLALERGGITKAASALVSLDAAPRNGITLDILQGKHPREDPAAIAEA---------------------KIEQPFEPSAIGDAIRKFDPQSAPGPSGLRHCHLQ-DVRDDELEVDIARLSRTIFK-SETLPPLFWTLHTGANLSTLGAKARPVACGDVFRRIIGETFCSDYSKQLVGNFEPKGEHGVACPGGVDLMTRAVSLGFAEGCIILSFDGKNSFNSIYRHEFLPALATVVPVVSGYAANLYARDPPKLLFAMDNGTTAVIDSARGVQQ 816
MY + R T ++R+ RA +LA E GGITKAASAL+S +PRN TL+ L+ HP EDP IA A + ++PFE I ++K +PQSAPGP GLR +LQ D +A S +F + LP FW LHT ANLS LG K RP+A G V RRII +FC Y + FE + G PGGV+++ +L +G ILSFDGKN++NS+ R LPA+AT P + Y N+YAR KLLF M++G+ V+ S RGVQQ
Sbjct: 24 MYEKNRRLRYYADTEDNRQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKVAGDRIKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDSFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQ 318
BLAST of mRNA_H-elongata_contig149927.3340.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE) HSP 1 Score: 207 bits (527), Expect = 8.280e-58 Identity = 125/295 (42.37%), Postives = 164/295 (55.59%), Query Frame = 1
Query: 1 MYAQRPHTRRGPSTPESRRLRAAKLALERGGITKAASALVSLDAAPRNGITLDILQGKHPREDPAAIAEA---------------------KIEQPFEPSAIGDAIRKFDPQSAPGPSGLRHCHLQ-DVRDDELEVDIARLSRTIFK-SETLPPLFWTLHTGANLSTLGAKARPVACGDVFRRIIGETFCSDYSKQLVGNFEPKGEHGVACPGGVDLMTRAVSLGFAEGCIILSFDGKNSFNSIYRHEFLPALATVVPVVSGYAANLYARDPPKLLFAMDNGTTAVIDSARGVQQ 816
MY + + T ++R+ RA +LA E GGITKAASAL+S +PRN TL+ L+ HP EDP IA A + ++PFE I ++K +PQSAPGP GLR +LQ D +A S +F + LP FW LHT ANLS LG K RP+A G V RRII +FC Y + FE + G PGGV+++ +L +G ILSFDGKN++NS+ R LPA+AT P + Y N+YAR KLLF M++G+ V+ S RGVQQ
Sbjct: 24 MYEKNRRLQYYADTEDNRQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRIKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQ 318
BLAST of mRNA_H-elongata_contig149927.3340.1 vs. uniprot
Match: A0A6H5KSY9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY9_9PHAE) HSP 1 Score: 142 bits (359), Expect = 1.140e-35 Identity = 70/152 (46.05%), Postives = 93/152 (61.18%), Query Frame = 1
Query: 361 RTIFKSETLPPLFWTLHTGANLSTLGAKARPVACGDVFRRIIGETFCSDYSKQLVGNFEPKGEHGVACPGGVDLMTRAVSLGFAEGCIILSFDGKNSFNSIYRHEFLPALATVVPVVSGYAANLYARDPPKLLFAMDNGTTAVIDSARGVQQ 816
+ + + LP FW LHT ANLS LG K RP+A G V RRII +FC Y + FE + G PGGV+++ +L +G ILSFDGKN++NS+ R LPA+AT P ++ Y N+YAR KLLF M++G+ V+ S RGVQQ
Sbjct: 15 KVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLAKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQ 166
BLAST of mRNA_H-elongata_contig149927.3340.1 vs. uniprot
Match: A0A6H5L3H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H3_9PHAE) HSP 1 Score: 131 bits (330), Expect = 2.110e-34 Identity = 70/164 (42.68%), Postives = 95/164 (57.93%), Query Frame = 1
Query: 328 DELEVDIARLSRTIFK-SETLPPLFWTLHTGANLSTLGAKARPVACGDVFRRIIGETFCSDYSKQLVGNFEPKGEHGVACPGGVDLMTRAVSLGFAEGCIILSFDGKNSFNSIYRHEFLPALATVVPVVSGYAANLYARDPPKLLFAMDNGTTAVIDSARGVQQ 816
D+ +A S +F + LP LFW T A+LS LG K RP+A G V RRII +FC Y + + FE + G PGGV+++ +L +G ILSFDG+N++NSI R L A+AT P + Y NLYAR KLLF M++G+ ++ S R VQQ
Sbjct: 3 DDFSETLADFSYKVFYYGDELPDLFWGFQTSASLSALGEKKRPIAVGGVLRRIISGSFCRQYKQGIADIFEASNQFGGGVPGGVEIVASTAALSHQQGSTILSFDGRNAYNSILRSSILTAVATHTPHLVKYFGNLYARIKAKLLFKMEDGSIEMVRSQREVQQ 166
BLAST of mRNA_H-elongata_contig149927.3340.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE) HSP 1 Score: 136 bits (343), Expect = 1.250e-32 Identity = 68/152 (44.74%), Postives = 91/152 (59.87%), Query Frame = 1
Query: 361 RTIFKSETLPPLFWTLHTGANLSTLGAKARPVACGDVFRRIIGETFCSDYSKQLVGNFEPKGEHGVACPGGVDLMTRAVSLGFAEGCIILSFDGKNSFNSIYRHEFLPALATVVPVVSGYAANLYARDPPKLLFAMDNGTTAVIDSARGVQQ 816
+ + + LP W LHT ANLS LG K RP+A G V RRII +F Y + FE + G PGGV+++ +L +G ILSFDGKN++NS+ R LPA+AT+ P + Y N+YAR KLLF M++G+ V+ S RGVQQ
Sbjct: 15 KVFYYGDELPDFLWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFYRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATLTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQ 166
BLAST of mRNA_H-elongata_contig149927.3340.1 vs. uniprot
Match: A0A6H5KQE6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE6_9PHAE) HSP 1 Score: 95.5 bits (236), Expect = 1.120e-20 Identity = 53/135 (39.26%), Postives = 71/135 (52.59%), Query Frame = 1
Query: 328 DELEVDIARLSRTIFK-SETLPPLFWTLHTGANLSTLGAKARPVACGDVFRRII------------GETFCSDYSKQLVGNFEPKGEHGVACPGGVDLMTRAVSLGFAEGCIILSFDGKNSFNSIYRHEFLPALA 693
D+ +A S +F + LP LFW LHT A+LS LG K RP+A G V RRII +FC Y + + FE + G PGGV+++ + +G ILSFDGKN++NSI R L A+A
Sbjct: 3 DDFSATLADFSHKVFYYGDELPDLFWGLHTSASLSALGEKKRPIAVGGVLRRIIXIXXXXXXXXXISGSFCRQYKQGIADIFEASNQFGGGVPGGVEIVASTAAPSHQQGSTILSFDGKNAYNSILRSSILTAVA 137
BLAST of mRNA_H-elongata_contig149927.3340.1 vs. uniprot
Match: A0A812N9S6_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812N9S6_9DINO) HSP 1 Score: 98.2 bits (243), Expect = 1.390e-19 Identity = 89/286 (31.12%), Postives = 126/286 (44.06%), Query Frame = 1
Query: 16 PHTRRGPSTP--ESRRLRAAKLALERGGITKAASALVSLDAAPRNGITLDILQGKHPREDPAAIAEAKIEQP-----FEPSAIGDAIRKFDPQSAPGPSGLRHCHLQD----VRDDELEVDIARLSRTIFKSETLPPLFWTLHTGANLSTLGAK---ARPVACGDVFRRIIGETFCSDYSKQLVGNFEPKGEHGVACPGGVDLMTRAV-----SLGFAEGCIILSFDGKNSFNSIYRHEFLPALATVVPVVSGYAANLYARDPPKLLFAMDNGTTAVIDSARGVQQ 816
P R GP+ E+R R +LA E G + +A AL+ PR+ TL LQ KHP+ +A +P F A+ A+R F SAPGPSGLR HL++ DE+ V +A L + + E P GA L L RP+A G+V RR++G+ C + P + GV P G + A S E +++ D +N+FN++ R L VP VS +A Y + +L F V+ S GVQQ
Sbjct: 102 PRQRSGPTRQSLEARHSRCRRLAAE-GDLARACDALLQEPPLPRDAATLAALQAKHPQSPLPDLAALGAPRPGAVPEFSAEAVAKAVRSFKRASAPGPSGLRPDHLRESLSTAHADEVAVHLAALCHLLARGEA-PATLAPHLAGATLHALPKPQGGVRPIAIGEVLRRLVGKLLCGSVREAARDQLWPL-QVGVGVPSGSEAAVHAARHWLQSHSGHENRVLVKLDFRNAFNAVSRASVLREARARVPEVSSWADWCYGQSS-RLRFGKH-----VVASTSGVQQ 378 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig149927.3340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig149927.3340.1 >prot_H-elongata_contig149927.3340.1 ID=prot_H-elongata_contig149927.3340.1|Name=mRNA_H-elongata_contig149927.3340.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=272bp MYAQRPHTRRGPSTPESRRLRAAKLALERGGITKAASALVSLDAAPRNGIback to top mRNA from alignment at H-elongata_contig149927:22..897- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig149927.3340.1 ID=mRNA_H-elongata_contig149927.3340.1|Name=mRNA_H-elongata_contig149927.3340.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=876bp|location=Sequence derived from alignment at H-elongata_contig149927:22..897- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig149927:22..897- >mRNA_H-elongata_contig149927.3340.1 ID=mRNA_H-elongata_contig149927.3340.1|Name=mRNA_H-elongata_contig149927.3340.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1632bp|location=Sequence derived from alignment at H-elongata_contig149927:22..897- (Himanthalia elongata Himel1 dioecious)back to top |