mRNA_H-elongata_contig1309.2236.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1309.2236.1 vs. uniprot
Match: A0A6H5JW68_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW68_9PHAE) HSP 1 Score: 260 bits (664), Expect = 1.240e-78 Identity = 122/220 (55.45%), Postives = 162/220 (73.64%), Query Frame = 3
Query: 615 PKCMYSSAPDELNFAIHVRLGDRATFLNGFETGYVHHIATFIETVTAAVTRQGLDVPMFHIFSETLMPCPDVQSRTFPEFPNWPVEKYQIEPCLDPVTPVDCAEKRAGALSCNPERSGIFRVFGKPLYLHVGLDVQNDLTCMSQADGVLMGCSTFGQISGVLNKGLKFFSFECAGAKTPNHYKMMPPLAVAEQGNLWVPMAGSWHDPSILSEAIFEVALD 1274
P+C +S + +L+ AIHVRLGDR LN + Y ++ F+ETV +A +G D P+FHIFSET CP ++ F EFP WPVE Q+ C++ TP +C EK AGA SCNP RSGIF V G+ + LHVGLDVQNDL+CM+ A+GVLMGCSTFGQ++GVL+KG++FFS ECAG +T YK++PP+A+A +G++WVP++GSWHDP I SE+I +LD
Sbjct: 68 PECAFSQS--KLDIAIHVRLGDRKDSLN--DDSYFDYLEDFMETVASAAIARGQDHPVFHIFSETHSRCPSAENGAFEEFPKWPVEMDQVSTCMEATTPEECPEKDAGAPSCNPTRSGIFAVDGREMNLHVGLDVQNDLSCMANANGVLMGCSTFGQVAGVLSKGIRFFSTECAGWRTTIQYKLIPPMAIAGRGHMWVPVSGSWHDPVIASESILGASLD 283
BLAST of mRNA_H-elongata_contig1309.2236.1 vs. uniprot
Match: D7G5J8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5J8_ECTSI) HSP 1 Score: 239 bits (609), Expect = 1.190e-71 Identity = 111/207 (53.62%), Postives = 144/207 (69.57%), Query Frame = 3
Query: 672 LGDRATFLNGFETGYVHHIATFIETVTAAVTRQGLDVPMFHIFSETLMPCPDVQSRTFPEFPNWPVEKYQIEPCLDPVTPVDCAEKRAGALSCNPERSGIFRVFGKPLYLHVGLDVQNDLTCMSQADGVLMGCSTFGQISGVLNKGLKFFSFECAGAKTPNHYKMMPPLAVAEQGNLWVPMAGSWHDPSILSEAIFEVALDNHLKNK 1292
+GDR F +G Y H++ +ETV +GL P+FH+FSETL PCP + F EFP WPVE +IE CL TP+DC EK+AG C P+R+GIFR+ K + LHVG DVQN+++CM QADGVLMGCSTFGQI+G+L +G+ FS C+G TP+ Y+ +PPLA+AE+G+LWVP+ GSWHDP + S +IF ALD L K
Sbjct: 1 MGDRRAFYDG-SLQYFHNVELIMETVADEFRERGLPEPLFHVFSETLSPCPSTVTGLFDEFPIWPVELDKIEECLAAATPIDCPEKQAGTF-CTPKRAGIFRIRDKSIVLHVGSDVQNEMSCMIQADGVLMGCSTFGQIAGLLTRGISLFSTRCSGEATPHQYRSIPPLAIAEKGHLWVPIEGSWHDPVLTSRSIFSAALDTLLVAK 205
BLAST of mRNA_H-elongata_contig1309.2236.1 vs. uniprot
Match: A0A6H5L814_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L814_9PHAE) HSP 1 Score: 209 bits (531), Expect = 1.290e-59 Identity = 113/242 (46.69%), Postives = 145/242 (59.92%), Query Frame = 3
Query: 591 ESIRFNHLPKCMYSSAPDELNFAIHVRLGDRATFLNGFETGYVHHIATFIETVTAAVTRQGLDVPMFHIFSETLMPCPDVQSRTFPEFPNWPVEKYQIEPCLD-------PVTPVDCAEKRAGALSCNPERSGIFRVFGKPLYLHVGLDVQNDLTCMSQADGVLMGCSTFGQISGVLNKG-LKFFSFECAGAKTPNHYKMMPPLAVAEQGNLWVPMAGSWHDPSILSEAIFEVALDNHLKNK 1292
ESIR+N P C Y + +LNFA+HVR+GDR L G Y + F+ TVT AV + PMFH+FSE L PCP ++ TF EFP WPVE+ Q++ + V + A R G FRV G+P+ LH+G + L+CM ADG+LMGCSTFGQ++GVLN + FFS EC G P KM+PPLAVAE+G +WVP+AGSW DP + ++ IF ALD LK K
Sbjct: 10 ESIRYNDEPGCGYEES--QLNFALHVRMGDRRE-LEGVTPEYFSLLEDFMATVTQAVVEREQAAPMFHVFSEALYPCPSPENATFTEFPLWPVERDQVDLNVSLHRLFSLSNEKVSVCLRNAAEQGAPASRKGTFRVEGRPVLLHLGRNAAEALSCMVHADGLLMGCSTFGQLAGVLNGDRISFFSTECGGHGAPLQSKMIPPLAVAERGRMWVPIAGSWRDPVLRAKHIFSAALDALLKRK 248
BLAST of mRNA_H-elongata_contig1309.2236.1 vs. uniprot
Match: D7FRT1_ECTSI (Long-chain acyl-CoA synthetase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRT1_ECTSI) HSP 1 Score: 209 bits (532), Expect = 1.090e-53 Identity = 112/235 (47.66%), Postives = 146/235 (62.13%), Query Frame = 3
Query: 603 FNHLPKCMYSSAPDELNFAIHVRLGDRATFLNGFETGYVHHIATFIETVTAAVTRQGLDVPMFHIFSETLMPCPDVQSRTFPEFPNWPVEKYQIEPCLDPVTPVDCAEKRAGALSCNPERSGIFRVFGKPLYLHVGLDVQNDLTCMSQADGVLMGCSTFGQISGVLN-KGLKFFSFECAGAKTPNHYKMMPPLAVAEQGNLWVPMAGSWHDPSILSEAIFEVALDNHLKNKRVSS 1304
+N P+C Y + ELNFA+HVR+GDR L G Y + F+ TVT AV + PMFH+FSE L PCP ++ TF EFP WPVE+ Q+ C P + AE+ A R FRV G+P+ LH+G + L+CM ADG+LMGCSTFGQ++GVLN G+ FFS EC G P KM+PPLAVAE+G +WVP+AGSW DP + ++ +F LD LK K+ S+
Sbjct: 172 YNDEPECGYEES--ELNFALHVRMGDRRE-LEGVTPEYFSLLEGFMATVTQAVVEREQAAPMFHVFSEALYPCPFPENATFTEFPFWPVERDQVSVC-----PRNAAEQDGPA-----SRPDTFRVEGRPVLLHLGRNAAEALSCMVHADGLLMGCSTFGQLAGVLNGDGISFFSTECGGHGAPLQSKMIPPLAVAERGRMWVPIAGSWRDPVLRAKHVFSAVLDELLKRKQGST 393
BLAST of mRNA_H-elongata_contig1309.2236.1 vs. uniprot
Match: A0A6H5JXM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXM8_9PHAE) HSP 1 Score: 172 bits (436), Expect = 1.050e-46 Identity = 82/185 (44.32%), Postives = 112/185 (60.54%), Query Frame = 3
Query: 738 IETVTAAVTRQGLDVPMFHIFSETLMPCPDVQSRTFPEFPNWPVEKYQIEPCLDPVTPVDCAEKRAGALSCNPERSGIFRVFGKPLYLHVGLDVQNDLTCMSQADGVLMGCSTFGQISGVLNKGLKFFSFECAGAKTPNHYKMMPPLAVAEQGNLWVPMAGSWHDPSILSEAIFEVALDNHLKNK 1292
++ + V G P+FHIFSET +PCP ++ FPEFP W V +I C P DC EK+AG C P +GIFRV G+P+ +VG +V L M AD V+MGCS FGQ++G+L+KG+K FS C G T KM P A+AE G LWVP+ GSW DP++ + IF A + +++ +
Sbjct: 1 MKVIAKEVHGLGQRTPLFHIFSETELPCPSLEDGVFPEFPEWAVAPDEIRECHSARPPDDCPEKQAGGDFCYPHHTGIFRVPGEPIIFNVGGNVVQSLMSMISADAVVMGCSAFGQLAGILSKGIKLFSTGCEGNMTWEQNKMAPLFAIAELGELWVPLEGSWADPTLTNVGIFRKAFELYVERE 185
BLAST of mRNA_H-elongata_contig1309.2236.1 vs. uniprot
Match: A0A6H5JJ94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ94_9PHAE) HSP 1 Score: 110 bits (276), Expect = 4.150e-25 Identity = 59/138 (42.75%), Postives = 77/138 (55.80%), Query Frame = 3
Query: 879 QIEPCLDPVTPVDCAEKRAGALSCNPERSGIFRVFGKPLYLHVGLDVQNDLTCMSQADGVLMGCSTFGQISGVLNKGLKFFSFECAGAKTPNHYKMMPPLAVAEQGNLWVPMAGSWHDPSILSEAIFEVALDNHLKNK 1292
QIE CL TP DC EK+AG C P+R+GIFR+ K + LH+G DVQN+++C+ +ADGVLM + +PPL +AE+G+LWVP+ GSWHDP S +IF ALD L K
Sbjct: 21 QIEECLAATTPQDCPEKQAGTF-CTPKRAGIFRIRYKSIVLHMGSDVQNEMSCIIEADGVLM--------------------------------RSIPPLTIAEKGHLWVPIEGSWHDPVWSSRSIFSAALDTLLVAK 125 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1309.2236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1309.2236.1 >prot_H-elongata_contig1309.2236.1 ID=prot_H-elongata_contig1309.2236.1|Name=mRNA_H-elongata_contig1309.2236.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=231bp MYSSAPDELNFAIHVRLGDRATFLNGFETGYVHHIATFIETVTAAVTRQGback to top mRNA from alignment at H-elongata_contig1309:14829..16858- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1309.2236.1 ID=mRNA_H-elongata_contig1309.2236.1|Name=mRNA_H-elongata_contig1309.2236.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2030bp|location=Sequence derived from alignment at H-elongata_contig1309:14829..16858- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1309:14829..16858- >mRNA_H-elongata_contig1309.2236.1 ID=mRNA_H-elongata_contig1309.2236.1|Name=mRNA_H-elongata_contig1309.2236.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1386bp|location=Sequence derived from alignment at H-elongata_contig1309:14829..16858- (Himanthalia elongata Himel1 dioecious)back to top |