mRNA_H-elongata_contig87021.16253.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig87021.16253.1
Unique NamemRNA_H-elongata_contig87021.16253.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig87021.16253.1 vs. uniprot
Match: D8LL81_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL81_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 6.900e-44
Identity = 68/81 (83.95%), Postives = 76/81 (93.83%), Query Frame = 1
Query:    4 FGDVEVVTKSQDRPLPEWVVQLQRKGAKTELQRATVEEACPKCGHPRMEFYTMQLRSADEGQTVFYECLSKKCKHKYSLNN 246
            FG+VEVVT+SQ+R  PEW+VQ+QRKG K ELQRATVEEACPKCGHP+MEFYTMQLRSADEGQTVFYECLSK CKHKY++NN
Sbjct:   35 FGEVEVVTRSQNRAEPEWLVQIQRKGEKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKACKHKYAVNN 115          
BLAST of mRNA_H-elongata_contig87021.16253.1 vs. uniprot
Match: A0A836CG05_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG05_9STRA)

HSP 1 Score: 130 bits (326), Expect = 5.360e-36
Identity = 56/81 (69.14%), Postives = 69/81 (85.19%), Query Frame = 1
Query:    4 FGDVEVVTKSQDRPLPEWVVQLQRKGAKTELQRATVEEACPKCGHPRMEFYTMQLRSADEGQTVFYECLSKKCKHKYSLNN 246
            FG VE++T+S  RPLP WV +L+ KG + + +RATV+E CPKCGHP MEFYTMQLRSADEGQTVFYECL+K C+HK+S+NN
Sbjct:   35 FGKVELITQSAPRPLPRWVEELENKGIREKQKRATVDEQCPKCGHPEMEFYTMQLRSADEGQTVFYECLNKNCQHKFSVNN 115          
BLAST of mRNA_H-elongata_contig87021.16253.1 vs. uniprot
Match: A0A024TQD9_9STRA (DNA-directed RNA polymerase subunit n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TQD9_9STRA)

HSP 1 Score: 105 bits (262), Expect = 3.330e-26
Identity = 50/74 (67.57%), Postives = 57/74 (77.03%), Query Frame = 1
Query:   22 VTKSQDRPLPEWVVQLQRKGAKTELQRATVEEACPKCGHPRMEFYTMQLRSADEGQTVFYECLSKKCKHKYSLN 243
            +T SQDRP P+WV +  +    T   RATVEE CPKCGHP MEFYT+QLRSADEGQTVFYEC  KKC H+YS+N
Sbjct:   52 ITYSQDRPEPKWVKENVQSQEVTGPSRATVEETCPKCGHPEMEFYTLQLRSADEGQTVFYEC--KKCGHRYSVN 123          
BLAST of mRNA_H-elongata_contig87021.16253.1 vs. uniprot
Match: A0A6G0WT35_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WT35_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.340e-25
Identity = 52/74 (70.27%), Postives = 58/74 (78.38%), Query Frame = 1
Query:   22 VTKSQDRPLPEWVVQLQRKGAKTELQRATVEEACPKCGHPRMEFYTMQLRSADEGQTVFYECLSKKCKHKYSLN 243
            VT SQDRP P+WV Q  +    T   RATVEE CPKCG+P+MEFYTMQLRSADEGQTVFYEC  KKC H+YS+N
Sbjct:   52 VTFSQDRPEPKWVKQDIQSQNVTGPARATVEETCPKCGNPQMEFYTMQLRSADEGQTVFYEC--KKCGHRYSVN 123          
BLAST of mRNA_H-elongata_contig87021.16253.1 vs. uniprot
Match: A0A485LF44_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LF44_9STRA)

HSP 1 Score: 102 bits (254), Expect = 5.350e-25
Identity = 50/74 (67.57%), Postives = 58/74 (78.38%), Query Frame = 1
Query:   22 VTKSQDRPLPEWVVQLQRKGAKTELQRATVEEACPKCGHPRMEFYTMQLRSADEGQTVFYECLSKKCKHKYSLN 243
            VT S+DRP P+WV +  +    T   RATVEE CPKCG+P+MEFYTMQLRSADEGQTVFYEC  KKC H+YS+N
Sbjct:   52 VTFSEDRPEPKWVKEEIQSQEVTGPARATVEETCPKCGNPQMEFYTMQLRSADEGQTVFYEC--KKCGHRYSVN 123          
BLAST of mRNA_H-elongata_contig87021.16253.1 vs. uniprot
Match: M4BZT8_HYAAE (DNA-directed RNA polymerase subunit n=22 Tax=Peronosporaceae TaxID=4777 RepID=M4BZT8_HYAAE)

HSP 1 Score: 100 bits (250), Expect = 2.200e-24
Identity = 46/76 (60.53%), Postives = 59/76 (77.63%), Query Frame = 1
Query:   19 VVTKSQDRPLPEWVVQLQRKGAKTELQRATVEEACPKCGHPRMEFYTMQLRSADEGQTVFYECLSKKCKHKYSLNN 246
            V+T+S+D+P P+W+   +     T   RATVEE CPKCG+P M++YT+QLRSADEGQTVFYEC  KKC HK+S+NN
Sbjct:   52 VITRSEDKPTPKWLDAEKVMSEVTGPARATVEETCPKCGNPEMDYYTLQLRSADEGQTVFYEC--KKCGHKFSVNN 125          
BLAST of mRNA_H-elongata_contig87021.16253.1 vs. uniprot
Match: A0A0N7L402_PLAHL (DNA-directed RNA polymerase subunit n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L402_PLAHL)

HSP 1 Score: 100 bits (250), Expect = 2.200e-24
Identity = 48/78 (61.54%), Postives = 59/78 (75.64%), Query Frame = 1
Query:   13 VEVVTKSQDRPLPEWVVQLQRKGAKTELQRATVEEACPKCGHPRMEFYTMQLRSADEGQTVFYECLSKKCKHKYSLNN 246
            + VVT+S+DRPLP+W+         T   RATVEE CPKC +P M++YT+QLRSADEGQTVFYEC  KKC HK+S+NN
Sbjct:   50 LSVVTQSEDRPLPKWLDAKVGMSEVTGPARATVEETCPKCENPEMDYYTLQLRSADEGQTVFYEC--KKCGHKFSVNN 125          
BLAST of mRNA_H-elongata_contig87021.16253.1 vs. uniprot
Match: A0A2D4BKP7_PYTIN (DNA-directed RNA polymerase subunit n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BKP7_PYTIN)

HSP 1 Score: 100 bits (248), Expect = 4.050e-24
Identity = 47/78 (60.26%), Postives = 59/78 (75.64%), Query Frame = 1
Query:   13 VEVVTKSQDRPLPEWVVQLQRKGAKTELQRATVEEACPKCGHPRMEFYTMQLRSADEGQTVFYECLSKKCKHKYSLNN 246
            + VVT S+++P+P+W+   Q         RATVEE CPKCG+P M++YTMQLRSADEGQTVFYEC  KKC HK+S+NN
Sbjct:   47 LSVVTCSEEKPVPKWLKTEQSVNEVKGPARATVEETCPKCGNPEMDYYTMQLRSADEGQTVFYEC--KKCGHKFSVNN 122          
BLAST of mRNA_H-elongata_contig87021.16253.1 vs. uniprot
Match: A0A067CLZ5_SAPPC (DNA-directed RNA polymerase subunit n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CLZ5_SAPPC)

HSP 1 Score: 98.2 bits (243), Expect = 2.430e-23
Identity = 49/74 (66.22%), Postives = 55/74 (74.32%), Query Frame = 1
Query:   22 VTKSQDRPLPEWVVQLQRKGAKTELQRATVEEACPKCGHPRMEFYTMQLRSADEGQTVFYECLSKKCKHKYSLN 243
            VT S+DRP P+WV         T   RATVEE CPKC +P+MEFYTMQLRSADEGQTVFYEC  KKC H+YS+N
Sbjct:   52 VTFSEDRPEPKWVKNAIVSQEVTGPARATVEEPCPKCNNPQMEFYTMQLRSADEGQTVFYEC--KKCGHRYSVN 123          
BLAST of mRNA_H-elongata_contig87021.16253.1 vs. uniprot
Match: A0A662XQG8_9STRA (DNA-directed RNA polymerase I subunit RPA12 n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XQG8_9STRA)

HSP 1 Score: 101 bits (251), Expect = 3.130e-23
Identity = 47/76 (61.84%), Postives = 59/76 (77.63%), Query Frame = 1
Query:   19 VVTKSQDRPLPEWVVQLQRKGAKTELQRATVEEACPKCGHPRMEFYTMQLRSADEGQTVFYECLSKKCKHKYSLNN 246
            VVT+S+D+PLP+W+   +     T   RATVEE CPKC +P M++YT+QLRSADEGQTVFYEC  KKC HK+S+NN
Sbjct:  173 VVTRSEDKPLPKWLDSEKVMSEVTGPARATVEETCPKCNNPEMDYYTLQLRSADEGQTVFYEC--KKCGHKFSVNN 246          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87021.16253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL81_ECTSI6.900e-4483.95DNA-directed RNA polymerase subunit n=2 Tax=Ectoca... [more]
A0A836CG05_9STRA5.360e-3669.14DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A024TQD9_9STRA3.330e-2667.57DNA-directed RNA polymerase subunit n=2 Tax=Aphano... [more]
A0A6G0WT35_9STRA1.340e-2570.27DNA-directed RNA polymerase subunit n=1 Tax=Aphano... [more]
A0A485LF44_9STRA5.350e-2567.57DNA-directed RNA polymerase subunit n=1 Tax=Aphano... [more]
M4BZT8_HYAAE2.200e-2460.53DNA-directed RNA polymerase subunit n=22 Tax=Peron... [more]
A0A0N7L402_PLAHL2.200e-2461.54DNA-directed RNA polymerase subunit n=1 Tax=Plasmo... [more]
A0A2D4BKP7_PYTIN4.050e-2460.26DNA-directed RNA polymerase subunit n=2 Tax=Pythiu... [more]
A0A067CLZ5_SAPPC2.430e-2366.22DNA-directed RNA polymerase subunit n=4 Tax=Saprol... [more]
A0A662XQG8_9STRA3.130e-2361.84DNA-directed RNA polymerase I subunit RPA12 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87021contigH-elongata_contig87021:376..1425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.8
Seed ortholog evalue1.5e-34
Seed eggNOG ortholog2880.D8LL81
Preferred nameZNRD1
KEGG rclassRC02795
KEGG koko:K03000
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00182
GOsGO:0000122,GO:0000428,GO:0001085,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005736,GO:0006139,GO:0006351,GO:0006352,GO:0006353,GO:0006355,GO:0006357,GO:0006360,GO:0006361,GO:0006363,GO:0006725,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009303,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016070,GO:0016072,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0030880,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040029,GO:0042790,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045815,GO:0045892,GO:0045934,GO:0046483,GO:0048518,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0055029,GO:0060255,GO:0061629,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:0098781,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990234,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen
EggNOG OGsCOG1594@1,KOG2907@2759
Ec32 ortholog descriptionDNA-directed RNA polymerase, subunit C11/M/9
Ec32 orthologEc-24_002610.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko03021
Hectar predicted targeting categoryother localisation
Exons2
Model size506
Cds size249
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87021.16253.1prot_H-elongata_contig87021.16253.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig87021 632..1425 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931271.2478702-UTR-H-elongata_contig87021:375..6311622931271.2478702-UTR-H-elongata_contig87021:375..631Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87021 376..631 -
1691679767.8248177-UTR-H-elongata_contig87021:375..6311691679767.8248177-UTR-H-elongata_contig87021:375..631Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig87021 376..631 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931271.271456-CDS-H-elongata_contig87021:631..7721622931271.271456-CDS-H-elongata_contig87021:631..772Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87021 632..772 -
1691679767.845387-CDS-H-elongata_contig87021:631..7721691679767.845387-CDS-H-elongata_contig87021:631..772Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87021 632..772 -
1622931271.2930176-CDS-H-elongata_contig87021:1317..14251622931271.2930176-CDS-H-elongata_contig87021:1317..1425Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87021 1318..1425 -
1691679767.8624136-CDS-H-elongata_contig87021:1317..14251691679767.8624136-CDS-H-elongata_contig87021:1317..1425Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87021 1318..1425 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig87021.16253.1

>prot_H-elongata_contig87021.16253.1 ID=prot_H-elongata_contig87021.16253.1|Name=mRNA_H-elongata_contig87021.16253.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
GFGDVEVVTKSQDRPLPEWVVQLQRKGAKTELQRATVEEACPKCGHPRME
FYTMQLRSADEGQTVFYECLSKKCKHKYSLNN*
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mRNA from alignment at H-elongata_contig87021:376..1425-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig87021.16253.1 ID=mRNA_H-elongata_contig87021.16253.1|Name=mRNA_H-elongata_contig87021.16253.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1050bp|location=Sequence derived from alignment at H-elongata_contig87021:376..1425- (Himanthalia elongata Himel1 dioecious)
GGCTTTGGAGACGTGGAGGTGGTGACGAAAAGCCAGGATCGCCCGTTGCC AGAGTGGGTTGTCCAGTTGCAGCGGAAAGGGGCGAAGACGGAGCTACAAC GCGCAACGGTGAGGGAAACGGAGATGGGCGCTTCCCCTTTTCAATTTTTG CCAAGGCGGTAGATAGATGATGCCCACACGCCCCGCATGATTCAATCTCG CCGTAAATCAACTTGTCGCCCGGGCGTGGTCAAAATCTCATGGTCCTTGC CGCACAATCCCTGCGCGGAACGAGGGGGTACTTGCCTCCCCCCTCCTCTA CCCCCCCTCCCCTCCCCCAACTTTAATATATATGGTATAAATATAGAGTC GACTCTCATCGATCGATCGATCGACCCAAAAATAAAACATACTCGTAACA CGTTTTATATGAAATAAAGTCGTGGGAAACAGCCATAGGCGCTGGGTAGA CAGACACATCGATAGTTAATACATCGTAGGTAATTATTAATATTAATATT AATATTACGTTTTCAAGGACAAAATCGCCATACGGTGCCACGTTGCATTC TTATATACTGCACTCGTACTCATAAAGGAAGCGGAGTTCTCCTCTGTCCC CTTGAAAGCTGATTGCCCCGGCCTACCCCTTTCGGCGACGGCGACGGCTG CAGGTGGAAGAGGCCTGCCCGAAGTGTGGACACCCCAGGATGGAGTTCTA CACGATGCAGCTGCGCTCGGCGGACGAGGGGCAAACCGTGTTCTACGAGT GCCTCTCGAAGAAGTGCAAGCACAAGTATTCGTTGAACAACTGACGACGT TGTATTGGCGGAATCCGTAGACGGACACGTGTAGTCAGACCGACGAGGAA AGACACGGGGGAGGGAAGGCTTCTTGGCCTGGTCGGGAGGATAACGAAAA ATAGTACCGTGCTCCATAAGGATCAAGGTTGGTTTTTCCATGTTTACCCT CGATTACCGAATATCGAATACCGAATACCGCTCCTCTTCCTCTGTGGCGT CAGTGAAGGAGCATGGTAGACGTCCCCACCATCGAATATAACTCCCTTCT
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Coding sequence (CDS) from alignment at H-elongata_contig87021:376..1425-

>mRNA_H-elongata_contig87021.16253.1 ID=mRNA_H-elongata_contig87021.16253.1|Name=mRNA_H-elongata_contig87021.16253.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig87021:376..1425- (Himanthalia elongata Himel1 dioecious)
GGCTTTGGAGACGTGGAGGTGGTGACGAAAAGCCAGGATCGCCCGTTGCC
AGAGTGGGTTGTCCAGTTGCAGCGGAAAGGGGCGAAGACGGAGCTACAAC
GCGCAACGGGCTTTGGAGACGTGGAGGTGGTGACGAAAAGCCAGGATCGC
CCGTTGCCAGAGTGGGTTGTCCAGTTGCAGCGGAAAGGGGCGAAGACGGA
GCTACAACGCGCAACGGTGGAAGAGGCCTGCCCGAAGTGTGGACACCCCA
GGATGGAGTTCTACACGATGCAGCTGCGCTCGGCGGACGAGGGGCAAACC
GTGTTCTACGAGTGCCTCTCGAAGAAGTGCAAGCACAAGTATTCGTTGAA
CAACTGAGTGGAAGAGGCCTGCCCGAAGTGTGGACACCCCAGGATGGAGT
TCTACACGATGCAGCTGCGCTCGGCGGACGAGGGGCAAACCGTGTTCTAC
GAGTGCCTCTCGAAGAAGTGCAAGCACAAGTATTCGTTGAACAACTGA
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