mRNA_H-elongata_contig87021.16253.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig87021.16253.1 vs. uniprot
Match: D8LL81_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL81_ECTSI) HSP 1 Score: 150 bits (378), Expect = 6.900e-44 Identity = 68/81 (83.95%), Postives = 76/81 (93.83%), Query Frame = 1
Query: 4 FGDVEVVTKSQDRPLPEWVVQLQRKGAKTELQRATVEEACPKCGHPRMEFYTMQLRSADEGQTVFYECLSKKCKHKYSLNN 246
FG+VEVVT+SQ+R PEW+VQ+QRKG K ELQRATVEEACPKCGHP+MEFYTMQLRSADEGQTVFYECLSK CKHKY++NN
Sbjct: 35 FGEVEVVTRSQNRAEPEWLVQIQRKGEKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKACKHKYAVNN 115
BLAST of mRNA_H-elongata_contig87021.16253.1 vs. uniprot
Match: A0A836CG05_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG05_9STRA) HSP 1 Score: 130 bits (326), Expect = 5.360e-36 Identity = 56/81 (69.14%), Postives = 69/81 (85.19%), Query Frame = 1
Query: 4 FGDVEVVTKSQDRPLPEWVVQLQRKGAKTELQRATVEEACPKCGHPRMEFYTMQLRSADEGQTVFYECLSKKCKHKYSLNN 246
FG VE++T+S RPLP WV +L+ KG + + +RATV+E CPKCGHP MEFYTMQLRSADEGQTVFYECL+K C+HK+S+NN
Sbjct: 35 FGKVELITQSAPRPLPRWVEELENKGIREKQKRATVDEQCPKCGHPEMEFYTMQLRSADEGQTVFYECLNKNCQHKFSVNN 115
BLAST of mRNA_H-elongata_contig87021.16253.1 vs. uniprot
Match: A0A024TQD9_9STRA (DNA-directed RNA polymerase subunit n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TQD9_9STRA) HSP 1 Score: 105 bits (262), Expect = 3.330e-26 Identity = 50/74 (67.57%), Postives = 57/74 (77.03%), Query Frame = 1
Query: 22 VTKSQDRPLPEWVVQLQRKGAKTELQRATVEEACPKCGHPRMEFYTMQLRSADEGQTVFYECLSKKCKHKYSLN 243
+T SQDRP P+WV + + T RATVEE CPKCGHP MEFYT+QLRSADEGQTVFYEC KKC H+YS+N
Sbjct: 52 ITYSQDRPEPKWVKENVQSQEVTGPSRATVEETCPKCGHPEMEFYTLQLRSADEGQTVFYEC--KKCGHRYSVN 123
BLAST of mRNA_H-elongata_contig87021.16253.1 vs. uniprot
Match: A0A6G0WT35_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WT35_9STRA) HSP 1 Score: 103 bits (258), Expect = 1.340e-25 Identity = 52/74 (70.27%), Postives = 58/74 (78.38%), Query Frame = 1
Query: 22 VTKSQDRPLPEWVVQLQRKGAKTELQRATVEEACPKCGHPRMEFYTMQLRSADEGQTVFYECLSKKCKHKYSLN 243
VT SQDRP P+WV Q + T RATVEE CPKCG+P+MEFYTMQLRSADEGQTVFYEC KKC H+YS+N
Sbjct: 52 VTFSQDRPEPKWVKQDIQSQNVTGPARATVEETCPKCGNPQMEFYTMQLRSADEGQTVFYEC--KKCGHRYSVN 123
BLAST of mRNA_H-elongata_contig87021.16253.1 vs. uniprot
Match: A0A485LF44_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LF44_9STRA) HSP 1 Score: 102 bits (254), Expect = 5.350e-25 Identity = 50/74 (67.57%), Postives = 58/74 (78.38%), Query Frame = 1
Query: 22 VTKSQDRPLPEWVVQLQRKGAKTELQRATVEEACPKCGHPRMEFYTMQLRSADEGQTVFYECLSKKCKHKYSLN 243
VT S+DRP P+WV + + T RATVEE CPKCG+P+MEFYTMQLRSADEGQTVFYEC KKC H+YS+N
Sbjct: 52 VTFSEDRPEPKWVKEEIQSQEVTGPARATVEETCPKCGNPQMEFYTMQLRSADEGQTVFYEC--KKCGHRYSVN 123
BLAST of mRNA_H-elongata_contig87021.16253.1 vs. uniprot
Match: M4BZT8_HYAAE (DNA-directed RNA polymerase subunit n=22 Tax=Peronosporaceae TaxID=4777 RepID=M4BZT8_HYAAE) HSP 1 Score: 100 bits (250), Expect = 2.200e-24 Identity = 46/76 (60.53%), Postives = 59/76 (77.63%), Query Frame = 1
Query: 19 VVTKSQDRPLPEWVVQLQRKGAKTELQRATVEEACPKCGHPRMEFYTMQLRSADEGQTVFYECLSKKCKHKYSLNN 246
V+T+S+D+P P+W+ + T RATVEE CPKCG+P M++YT+QLRSADEGQTVFYEC KKC HK+S+NN
Sbjct: 52 VITRSEDKPTPKWLDAEKVMSEVTGPARATVEETCPKCGNPEMDYYTLQLRSADEGQTVFYEC--KKCGHKFSVNN 125
BLAST of mRNA_H-elongata_contig87021.16253.1 vs. uniprot
Match: A0A0N7L402_PLAHL (DNA-directed RNA polymerase subunit n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L402_PLAHL) HSP 1 Score: 100 bits (250), Expect = 2.200e-24 Identity = 48/78 (61.54%), Postives = 59/78 (75.64%), Query Frame = 1
Query: 13 VEVVTKSQDRPLPEWVVQLQRKGAKTELQRATVEEACPKCGHPRMEFYTMQLRSADEGQTVFYECLSKKCKHKYSLNN 246
+ VVT+S+DRPLP+W+ T RATVEE CPKC +P M++YT+QLRSADEGQTVFYEC KKC HK+S+NN
Sbjct: 50 LSVVTQSEDRPLPKWLDAKVGMSEVTGPARATVEETCPKCENPEMDYYTLQLRSADEGQTVFYEC--KKCGHKFSVNN 125
BLAST of mRNA_H-elongata_contig87021.16253.1 vs. uniprot
Match: A0A2D4BKP7_PYTIN (DNA-directed RNA polymerase subunit n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BKP7_PYTIN) HSP 1 Score: 100 bits (248), Expect = 4.050e-24 Identity = 47/78 (60.26%), Postives = 59/78 (75.64%), Query Frame = 1
Query: 13 VEVVTKSQDRPLPEWVVQLQRKGAKTELQRATVEEACPKCGHPRMEFYTMQLRSADEGQTVFYECLSKKCKHKYSLNN 246
+ VVT S+++P+P+W+ Q RATVEE CPKCG+P M++YTMQLRSADEGQTVFYEC KKC HK+S+NN
Sbjct: 47 LSVVTCSEEKPVPKWLKTEQSVNEVKGPARATVEETCPKCGNPEMDYYTMQLRSADEGQTVFYEC--KKCGHKFSVNN 122
BLAST of mRNA_H-elongata_contig87021.16253.1 vs. uniprot
Match: A0A067CLZ5_SAPPC (DNA-directed RNA polymerase subunit n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CLZ5_SAPPC) HSP 1 Score: 98.2 bits (243), Expect = 2.430e-23 Identity = 49/74 (66.22%), Postives = 55/74 (74.32%), Query Frame = 1
Query: 22 VTKSQDRPLPEWVVQLQRKGAKTELQRATVEEACPKCGHPRMEFYTMQLRSADEGQTVFYECLSKKCKHKYSLN 243
VT S+DRP P+WV T RATVEE CPKC +P+MEFYTMQLRSADEGQTVFYEC KKC H+YS+N
Sbjct: 52 VTFSEDRPEPKWVKNAIVSQEVTGPARATVEEPCPKCNNPQMEFYTMQLRSADEGQTVFYEC--KKCGHRYSVN 123
BLAST of mRNA_H-elongata_contig87021.16253.1 vs. uniprot
Match: A0A662XQG8_9STRA (DNA-directed RNA polymerase I subunit RPA12 n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XQG8_9STRA) HSP 1 Score: 101 bits (251), Expect = 3.130e-23 Identity = 47/76 (61.84%), Postives = 59/76 (77.63%), Query Frame = 1
Query: 19 VVTKSQDRPLPEWVVQLQRKGAKTELQRATVEEACPKCGHPRMEFYTMQLRSADEGQTVFYECLSKKCKHKYSLNN 246
VVT+S+D+PLP+W+ + T RATVEE CPKC +P M++YT+QLRSADEGQTVFYEC KKC HK+S+NN
Sbjct: 173 VVTRSEDKPLPKWLDSEKVMSEVTGPARATVEETCPKCNNPEMDYYTLQLRSADEGQTVFYEC--KKCGHKFSVNN 246 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87021.16253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig87021.16253.1 >prot_H-elongata_contig87021.16253.1 ID=prot_H-elongata_contig87021.16253.1|Name=mRNA_H-elongata_contig87021.16253.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp GFGDVEVVTKSQDRPLPEWVVQLQRKGAKTELQRATVEEACPKCGHPRMEback to top mRNA from alignment at H-elongata_contig87021:376..1425- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig87021.16253.1 ID=mRNA_H-elongata_contig87021.16253.1|Name=mRNA_H-elongata_contig87021.16253.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1050bp|location=Sequence derived from alignment at H-elongata_contig87021:376..1425- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig87021:376..1425- >mRNA_H-elongata_contig87021.16253.1 ID=mRNA_H-elongata_contig87021.16253.1|Name=mRNA_H-elongata_contig87021.16253.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig87021:376..1425- (Himanthalia elongata Himel1 dioecious)back to top |