prot_H-elongata_contig87021.16253.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig87021.16253.1
Unique Nameprot_H-elongata_contig87021.16253.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length83
Homology
BLAST of mRNA_H-elongata_contig87021.16253.1 vs. uniprot
Match: D8LL81_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL81_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 1.780e-45
Identity = 68/81 (83.95%), Postives = 76/81 (93.83%), Query Frame = 0
Query:    2 FGDVEVVTKSQDRPLPEWVVQLQRKGAKTELQRATVEEACPKCGHPRMEFYTMQLRSADEGQTVFYECLSKKCKHKYSLNN 82
            FG+VEVVT+SQ+R  PEW+VQ+QRKG K ELQRATVEEACPKCGHP+MEFYTMQLRSADEGQTVFYECLSK CKHKY++NN
Sbjct:   35 FGEVEVVTRSQNRAEPEWLVQIQRKGEKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKACKHKYAVNN 115          
BLAST of mRNA_H-elongata_contig87021.16253.1 vs. uniprot
Match: A0A836CG05_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG05_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.490e-37
Identity = 56/81 (69.14%), Postives = 69/81 (85.19%), Query Frame = 0
Query:    2 FGDVEVVTKSQDRPLPEWVVQLQRKGAKTELQRATVEEACPKCGHPRMEFYTMQLRSADEGQTVFYECLSKKCKHKYSLNN 82
            FG VE++T+S  RPLP WV +L+ KG + + +RATV+E CPKCGHP MEFYTMQLRSADEGQTVFYECL+K C+HK+S+NN
Sbjct:   35 FGKVELITQSAPRPLPRWVEELENKGIREKQKRATVDEQCPKCGHPEMEFYTMQLRSADEGQTVFYECLNKNCQHKFSVNN 115          
BLAST of mRNA_H-elongata_contig87021.16253.1 vs. uniprot
Match: A0A024TQD9_9STRA (DNA-directed RNA polymerase subunit n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TQD9_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.070e-27
Identity = 50/74 (67.57%), Postives = 57/74 (77.03%), Query Frame = 0
Query:    8 VTKSQDRPLPEWVVQLQRKGAKTELQRATVEEACPKCGHPRMEFYTMQLRSADEGQTVFYECLSKKCKHKYSLN 81
            +T SQDRP P+WV +  +    T   RATVEE CPKCGHP MEFYT+QLRSADEGQTVFYEC  KKC H+YS+N
Sbjct:   52 ITYSQDRPEPKWVKENVQSQEVTGPSRATVEETCPKCGHPEMEFYTLQLRSADEGQTVFYEC--KKCGHRYSVN 123          
BLAST of mRNA_H-elongata_contig87021.16253.1 vs. uniprot
Match: A0A6G0WT35_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WT35_9STRA)

HSP 1 Score: 104 bits (259), Expect = 4.320e-27
Identity = 52/74 (70.27%), Postives = 58/74 (78.38%), Query Frame = 0
Query:    8 VTKSQDRPLPEWVVQLQRKGAKTELQRATVEEACPKCGHPRMEFYTMQLRSADEGQTVFYECLSKKCKHKYSLN 81
            VT SQDRP P+WV Q  +    T   RATVEE CPKCG+P+MEFYTMQLRSADEGQTVFYEC  KKC H+YS+N
Sbjct:   52 VTFSQDRPEPKWVKQDIQSQNVTGPARATVEETCPKCGNPQMEFYTMQLRSADEGQTVFYEC--KKCGHRYSVN 123          
BLAST of mRNA_H-elongata_contig87021.16253.1 vs. uniprot
Match: A0A485LF44_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LF44_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.750e-26
Identity = 50/74 (67.57%), Postives = 58/74 (78.38%), Query Frame = 0
Query:    8 VTKSQDRPLPEWVVQLQRKGAKTELQRATVEEACPKCGHPRMEFYTMQLRSADEGQTVFYECLSKKCKHKYSLN 81
            VT S+DRP P+WV +  +    T   RATVEE CPKCG+P+MEFYTMQLRSADEGQTVFYEC  KKC H+YS+N
Sbjct:   52 VTFSEDRPEPKWVKEEIQSQEVTGPARATVEETCPKCGNPQMEFYTMQLRSADEGQTVFYEC--KKCGHRYSVN 123          
BLAST of mRNA_H-elongata_contig87021.16253.1 vs. uniprot
Match: M4BZT8_HYAAE (DNA-directed RNA polymerase subunit n=22 Tax=Peronosporaceae TaxID=4777 RepID=M4BZT8_HYAAE)

HSP 1 Score: 101 bits (251), Expect = 7.300e-26
Identity = 46/76 (60.53%), Postives = 59/76 (77.63%), Query Frame = 0
Query:    7 VVTKSQDRPLPEWVVQLQRKGAKTELQRATVEEACPKCGHPRMEFYTMQLRSADEGQTVFYECLSKKCKHKYSLNN 82
            V+T+S+D+P P+W+   +     T   RATVEE CPKCG+P M++YT+QLRSADEGQTVFYEC  KKC HK+S+NN
Sbjct:   52 VITRSEDKPTPKWLDAEKVMSEVTGPARATVEETCPKCGNPEMDYYTLQLRSADEGQTVFYEC--KKCGHKFSVNN 125          
BLAST of mRNA_H-elongata_contig87021.16253.1 vs. uniprot
Match: A0A0N7L402_PLAHL (DNA-directed RNA polymerase subunit n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L402_PLAHL)

HSP 1 Score: 101 bits (251), Expect = 7.300e-26
Identity = 48/78 (61.54%), Postives = 59/78 (75.64%), Query Frame = 0
Query:    5 VEVVTKSQDRPLPEWVVQLQRKGAKTELQRATVEEACPKCGHPRMEFYTMQLRSADEGQTVFYECLSKKCKHKYSLNN 82
            + VVT+S+DRPLP+W+         T   RATVEE CPKC +P M++YT+QLRSADEGQTVFYEC  KKC HK+S+NN
Sbjct:   50 LSVVTQSEDRPLPKWLDAKVGMSEVTGPARATVEETCPKCENPEMDYYTLQLRSADEGQTVFYEC--KKCGHKFSVNN 125          
BLAST of mRNA_H-elongata_contig87021.16253.1 vs. uniprot
Match: A0A2D4BKP7_PYTIN (DNA-directed RNA polymerase subunit n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BKP7_PYTIN)

HSP 1 Score: 100 bits (249), Expect = 1.350e-25
Identity = 47/78 (60.26%), Postives = 59/78 (75.64%), Query Frame = 0
Query:    5 VEVVTKSQDRPLPEWVVQLQRKGAKTELQRATVEEACPKCGHPRMEFYTMQLRSADEGQTVFYECLSKKCKHKYSLNN 82
            + VVT S+++P+P+W+   Q         RATVEE CPKCG+P M++YTMQLRSADEGQTVFYEC  KKC HK+S+NN
Sbjct:   47 LSVVTCSEEKPVPKWLKTEQSVNEVKGPARATVEETCPKCGNPEMDYYTMQLRSADEGQTVFYEC--KKCGHKFSVNN 122          
BLAST of mRNA_H-elongata_contig87021.16253.1 vs. uniprot
Match: A0A067CLZ5_SAPPC (DNA-directed RNA polymerase subunit n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CLZ5_SAPPC)

HSP 1 Score: 98.6 bits (244), Expect = 8.210e-25
Identity = 49/74 (66.22%), Postives = 55/74 (74.32%), Query Frame = 0
Query:    8 VTKSQDRPLPEWVVQLQRKGAKTELQRATVEEACPKCGHPRMEFYTMQLRSADEGQTVFYECLSKKCKHKYSLN 81
            VT S+DRP P+WV         T   RATVEE CPKC +P+MEFYTMQLRSADEGQTVFYEC  KKC H+YS+N
Sbjct:   52 VTFSEDRPEPKWVKNAIVSQEVTGPARATVEEPCPKCNNPQMEFYTMQLRSADEGQTVFYEC--KKCGHRYSVN 123          
BLAST of mRNA_H-elongata_contig87021.16253.1 vs. uniprot
Match: A0A662XQG8_9STRA (DNA-directed RNA polymerase I subunit RPA12 n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XQG8_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.040e-24
Identity = 47/76 (61.84%), Postives = 59/76 (77.63%), Query Frame = 0
Query:    7 VVTKSQDRPLPEWVVQLQRKGAKTELQRATVEEACPKCGHPRMEFYTMQLRSADEGQTVFYECLSKKCKHKYSLNN 82
            VVT+S+D+PLP+W+   +     T   RATVEE CPKC +P M++YT+QLRSADEGQTVFYEC  KKC HK+S+NN
Sbjct:  173 VVTRSEDKPLPKWLDSEKVMSEVTGPARATVEETCPKCNNPEMDYYTLQLRSADEGQTVFYEC--KKCGHKFSVNN 246          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87021.16253.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL81_ECTSI1.780e-4583.95DNA-directed RNA polymerase subunit n=2 Tax=Ectoca... [more]
A0A836CG05_9STRA1.490e-3769.14DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A024TQD9_9STRA1.070e-2767.57DNA-directed RNA polymerase subunit n=2 Tax=Aphano... [more]
A0A6G0WT35_9STRA4.320e-2770.27DNA-directed RNA polymerase subunit n=1 Tax=Aphano... [more]
A0A485LF44_9STRA1.750e-2667.57DNA-directed RNA polymerase subunit n=1 Tax=Aphano... [more]
M4BZT8_HYAAE7.300e-2660.53DNA-directed RNA polymerase subunit n=22 Tax=Peron... [more]
A0A0N7L402_PLAHL7.300e-2661.54DNA-directed RNA polymerase subunit n=1 Tax=Plasmo... [more]
A0A2D4BKP7_PYTIN1.350e-2560.26DNA-directed RNA polymerase subunit n=2 Tax=Pythiu... [more]
A0A067CLZ5_SAPPC8.210e-2566.22DNA-directed RNA polymerase subunit n=4 Tax=Saprol... [more]
A0A662XQG8_9STRA1.040e-2461.84DNA-directed RNA polymerase I subunit RPA12 n=1 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 39..80
e-value: 1.7E-13
score: 60.8
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 40..78
e-value: 1.2E-16
score: 60.3
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 37..79
score: 13.322
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPIRSFPIRSF005586RNApol_RpoMcoord: 4..82
e-value: 2.7E-16
score: 58.0
NoneNo IPR availableGENE3D2.20.25.10coord: 25..80
e-value: 3.5E-19
score: 69.8
NoneNo IPR availablePANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 25..82
NoneNo IPR availablePANTHERPTHR11239:SF14DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA12coord: 25..82
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 35..79

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87021contigH-elongata_contig87021:632..1425 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87021.16253.1mRNA_H-elongata_contig87021.16253.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig87021 376..1425 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig87021.16253.1 ID=prot_H-elongata_contig87021.16253.1|Name=mRNA_H-elongata_contig87021.16253.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
GFGDVEVVTKSQDRPLPEWVVQLQRKGAKTELQRATVEEACPKCGHPRME
FYTMQLRSADEGQTVFYECLSKKCKHKYSLNN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001222Znf_TFIIS
IPR012164Rpa12/Rpb9/Rpc10/TFS