mRNA_H-elongata_contig81165.15772.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81165.15772.1
Unique NamemRNA_H-elongata_contig81165.15772.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig81165.15772.1 vs. uniprot
Match: A0A438HUL4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HUL4_VITVI)

HSP 1 Score: 250 bits (639), Expect = 3.590e-74
Identity = 143/409 (34.96%), Postives = 232/409 (56.72%), Query Frame = 1
Query:    1 LDPEPTTMGEAQASSEWPQWKRAIAHEMDGQTTRGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEYSSPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEEIYVELPEAYR--DSRKQVGLLRKAMYGLVHARLLW*KKFGIELEAKGFQRFEADPCVVRRILHGTVVVVIVVYVDDLLVASVTKRDDEQAVRDLCSCFPIKNLGEALYFLGCHITRDRNAGTLKFDQHQYIHTMAERFGVTKTSTIPS-AARGKALSKSDSPQTDAEFEEMRQIPYRKIVGALMWAATMTRPDISFAAYQLGKFNGNPGPTHWRASQKALQYLWCTRDLGITYGGEPGGETKLSAWIDVDYDTCPYTRRSVSGGAVL*LAGPSVGSHECK 1218
            L+ +P ++ + + SS   +W +A+  EM      GVW +VE PKG   +G + +FK K D  G I +YK RLVA+GF Q +GI Y+E  SP  ++ S R++++++A    E  Q+DV  A+L  +++E IY+  PE +   DS++ V  L++++YGL  A   W +KF   + + GF+    D C+  +   G+  +++V+YVDD+L+AS       + +R L S F +K+LG A + LG  I RDR+ G L   Q  YI  +  RFG++  +   +  A+G   S    P+ + E ++M + PY   VG+LM+A   TRPDI++    LG++  NPG  HW+ +++ ++YL  T+D  +TY        ++ A+ D D+  C  +RRS SG  +  LAG +V     K
Sbjct:    3 LEDDPISLSQVKQSSNSEKWIKAMKDEMKSMKDNGVWDLVELPKGVKPIGCKWIFKTKRDSKGNIVRYKARLVAKGFTQKEGIDYKETFSPVSSKDSFRIIMALVAHYDLELHQMDVKTAFLNGNIDETIYMVQPENFESNDSKQLVCRLKRSIYGLKQASRQWYRKFDQVITSFGFKENTVDQCIYLK-FSGSKFIILVLYVDDILLASSDVGLLHETMRFLSSKFDMKDLGNASFVLGIQIHRDRSRGILGLSQKAYIDKVLSRFGMSNYAPGDTPVAKGDKFSLHQCPKNELEKKDMERFPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKKAKRVMRYLQRTKDYMLTY--RRSSHLEIVAYSDSDFAGCLDSRRSTSG-CIFMLAGGAVSWKSVK 407          
BLAST of mRNA_H-elongata_contig81165.15772.1 vs. uniprot
Match: A0A5N6NCI1_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NCI1_9ASTR)

HSP 1 Score: 247 bits (630), Expect = 5.630e-74
Identity = 138/398 (34.67%), Postives = 226/398 (56.78%), Query Frame = 1
Query:   10 EPTTMGEAQASSEWPQWKRAIAHEMDGQTTRGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEYSSPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEEIYVELPEAYRDSRKQ--VGLLRKAMYGLVHARLLW*KKFGIELEAKGFQRFEADPCVVRRILHGTVVVVIVVYVDDLLVASVTKRDDEQAVRDLCSCFPIKNLGEALYFLGCHITRDRNAGTLKFDQHQYIHTMAERFGVTKTSTIPS-AARGKALSKSDSPQTDAEFEEMRQIPYRKIVGALMWAATMTRPDISFAAYQLGKFNGNPGPTHWRASQKALQYLWCTRDLGITYGGEPGGETKLSAWIDVDYDTCPYTRRSVSGGAVL*LAGP 1194
            +P++  EA  S +  +W  A+  E++      VW++VE   G   +G + V+K K+D +G +E++K RLVA+G+ Q +GI Y+E  SP   + S+R+V++++A    E  Q+DV  A+L  ++ E++Y+  PE ++   K+  V  L+K+ YGL  A   W  KF   ++  GF   + D C   + + G+   ++V+YVDD+L+AS +     ++ R L S F +K+LGEA Y +G  I RDR +GTL   Q  YI+ +  R+ +   S + +   +G        P+T+ E E+MR IPY  +VG++M+A   TRPDI++ A  LG++  NPG  HW+A++K L+YL  T+D  +TY      E  +  +   D+  C   ++S SG   L   GP
Sbjct:   35 DPSSYNEAITSDQSSEWHNAMIDELESMDKNNVWELVELLNGAKPVGCKWVYKTKLDPNGNVERFKARLVAKGYTQKEGIDYQETFSPVSQKDSLRIVMALVAHFDLELHQMDVKTAFLNGELYEDVYMTQPEGFKPKGKEHLVCKLKKSTYGLKQASRQWYLKFDEVMKKHGFVMNQVDQCNYLK-MSGSNFAILVIYVDDILLASNSLDMLHESKRLLSSNFDMKDLGEASYVIGIEIHRDRASGTLGLSQKAYINRVLTRYNMQHCSPLVAPVVKGDVFGTFQCPKTEVEKEQMRLIPYASVVGSIMYANVCTRPDIAYIAGMLGRYQSNPGLDHWKATKKVLRYLQGTKDYKLTYRRSDNRE--VIGYSGSDFAKCKDDKKSTSGYIFLLAGGP 429          
BLAST of mRNA_H-elongata_contig81165.15772.1 vs. uniprot
Match: A0A401GP19_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GP19_9APHY)

HSP 1 Score: 250 bits (639), Expect = 3.450e-73
Identity = 151/402 (37.56%), Postives = 227/402 (56.47%), Query Frame = 1
Query:   10 EPTTMGEAQASSEWPQWKRAIAHEMDGQTTRGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEYSSPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEEIYVELPEAYRDSRKQ--VGLLRKAMYGLVHARLLW*KKFGIELEAKGFQRFEADPCVV-RRILHGTVVVVIVVYVDDLLVASVTKRDDEQAVRDLCSCFPIKNLGEALYFLGCHITRDRNAGTLKFDQHQYIHTMAERFGV--TKTSTIPSAARGKALSKSDSPQTDAEFEEMRQIPYRKIVGALMWAATMTRPDISFAAYQLGKFNGNPGPTHWRASQKALQYLWCTRDLGITYGGEPGGETKLSAWIDVDYDTCPYTRRSVSGGAVL*LAGPSV 1200
            +P ++ EA  S+EWP+WK AI  EM    + G + +VE PK   ++G++ VF+ K + +  IE YK RLVAQGF QV GI + E  +P    ASI ++L++ A   WE  Q+DV  AYL  D+EEEIY++ P    +  K+  V  L++ +YGL  +   + KK   EL + G  R + D CV   R     ++++I + VDD  +A  TK       R++ + F + +LGE  + LG  + RDR+  TL   QH YI  +  RF +   K+ T P    G  LS    P T  +FE+M+ IPYR+++G+LM+AA  TRPDI++A   L +F  NPG  HW A+++  +YL  TR+  +T+G    G   +  + D D+ +  + R S+SG   L L G +V
Sbjct:  111 DPASLNEAMQSTEWPKWKEAIVKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEREIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIHLILALAACYDWELHQMDVKGAYLNGDLEEEIYMQQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVFWLRNEEDVLILLIALSVDDSTIAG-TKAAVFWFKREISTRFKMSDLGEMHWILGIEVQRDRDVRTLSLSQHVYIDMILTRFNLQDAKSLTTP-LDPGTVLSIHQCPSTPRQFEDMKNIPYREVIGSLMYAALGTRPDIAYAITALSQFMQNPGQPHWEAAKRVFRYLAGTRERWLTFGETTDG---VEGFSDADWGSAEH-RHSISGYVFL-LDGSAV 505          
BLAST of mRNA_H-elongata_contig81165.15772.1 vs. uniprot
Match: A0A5N6M1Y8_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6M1Y8_9ASTR)

HSP 1 Score: 249 bits (636), Expect = 3.620e-73
Identity = 141/405 (34.81%), Postives = 231/405 (57.04%), Query Frame = 1
Query:   10 EPTTMGEAQASSEWPQWKRAIAHEMDGQTTRGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEYSSPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEEIYVELPEAYRDSRKQ--VGLLRKAMYGLVHARLLW*KKFGIELEAKGFQRFEADPCVVRRILHGTVVVVIVVYVDDLLVASVTKRDDEQAVRDLCSCFPIKNLGEALYFLGCHITRDRNAGTLKFDQHQYIHTMAERFGVTKTS-TIPSAARGKALSKSDSPQTDAEFEEMRQIPYRKIVGALMWAATMTRPDISFAAYQLGKFNGNPGPTHWRASQKALQYLWCTRDLGITYGGEPGGETKLSAWIDVDYDTCPYTRRSVSGGAVL*LAGP-SVGSHE 1212
            +PTT  +A    +  QW  A+  E+    T  VW + E P G   +G + V+K K+D +G IE+YK RLVA+G+ Q +GI Y+E  SP   + S+R+V++++A    E  Q+DV  A+L  D+ E+++++ PE +    K+  V  L K++YGL  A   W  KF   ++   F + + D C+  +I  G+  V++V+YVDD+L+AS       ++ R L + F +K+LGEA Y +G  I R+R+ GTL   Q  YI  + +RF + + S ++    +G        P+++AE ++MR IPY  +VG+LM+A   TRPDI++    LG++  NPG  HW+A++K L+YL  T++  +TY      + ++  +   D+  C   ++S SG   +   GP S  SH+
Sbjct:  109 DPTTFKDAMNCDQSTQWLDAMKDELKSMKTNNVWTLTELPTGAKPVGCKWVYKTKLDPNGNIERYKARLVAKGYTQREGIDYQETFSPVSRKDSLRIVMALVAHFDLELHQMDVKTAFLNGDLHEDVFMKQPEGFEPKGKEHMVCKLNKSIYGLKQASRQWYIKFDEVMKKHNFIKNQVDQCIYLKI-SGSKFVILVLYVDDILLASNNLDMLYESKRLLSANFDMKDLGEASYVIGIEIHRNRSIGTLGLSQKAYIERILKRFNMQQCSPSVAPVVKGDNFGSYQCPKSEAEIDQMRLIPYASVVGSLMYAQVCTRPDIAYITGMLGRYQSNPGLDHWKAAKKVLRYLQGTKEYKLTY--RRSDDLEVIGYTYSDFAKCKDDKKSTSGYIFMLSGGPISWKSHK 510          
BLAST of mRNA_H-elongata_contig81165.15772.1 vs. uniprot
Match: A0A2N9GV19_FAGSY (Integrase catalytic domain-containing protein n=6 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GV19_FAGSY)

HSP 1 Score: 254 bits (648), Expect = 4.820e-73
Identity = 150/406 (36.95%), Postives = 230/406 (56.65%), Query Frame = 1
Query:   10 EPTTMGEAQASSEWPQWKRAIAHEMDGQTTRGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEYSSPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEEIYVELPEAYRDSRKQ--VGLLRKAMYGLVHARLLW*KKFGIELEAKGFQRFEADPCVVRRILHGTVVVVIVVYVDDLLVASVTKRDDEQAVRDLCSCFPIKNLGEALYFLGCHITRDRNAGTLKFDQHQYIHTMAERFGVTKTSTIPS-AARGKALSKSDSPQTDAEFEEMRQIPYRKIVGALMWAATMTRPDISFAAYQLGKFNGNPGPTHWRASQKALQYLWCTRDLGITYGGEPGGETKLSAWIDVDYDTCPYTRRSVSGGAVL*LAGPSVGSHECK 1218
            +P++  +A  SS+  +W  A+  E+       VW +V+ P G   +G + VFK K D  G+IE+YK RLVA+GF Q +G+ Y+E  SP  ++ S R+V++++A    E  Q+DV  A+L  D+ E++Y+  P+ ++ S K+  V  L+K++YGL  A   W  KF   + + GF+    D C+  +I  G+ ++ +V+YVDD+L+AS       +  R L   F +K+LGEA + LG  I RDR+ G L   Q  YI  + ERF ++  +   +   +G  LSK   PQ D E  EM++IPY   VG+LM+A   TRPDI+FA   LG+F  +PG  HWRA++K L+YL  T+D  +TY        ++  + D DY  C    +S SG   + LAG ++     K
Sbjct:  277 DPSSYSQAIQSSQSTKWIDAMVDELKSMDNNNVWDLVDLPNGCRPIGCKWVFKTKKDSTGKIERYKARLVAKGFSQKEGVDYKETFSPVSSKDSFRIVMALVAHFDLELHQMDVKTAFLNGDLTEDVYMLQPDGFQVSGKEHMVCKLKKSIYGLKQASRQWYLKFDNVVTSFGFKENPVDHCIYLKI-SGSKIIFLVLYVDDILLASNDLGLLRETKRFLFDNFEMKDLGEASFVLGIEIHRDRSRGILGLSQKSYISRVLERFNMSTCAAGDAPVVKGDKLSKLQCPQNDLERNEMKKIPYASAVGSLMYAQVCTRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYLQRTKDFMLTY--RRSDLLEVVGYADADYAGCADDLKSTSGYVFM-LAGGAISWKSVK 678          
BLAST of mRNA_H-elongata_contig81165.15772.1 vs. uniprot
Match: A0A284QR88_ARMOS (Uncharacterized protein n=2 Tax=Armillaria TaxID=47424 RepID=A0A284QR88_ARMOS)

HSP 1 Score: 259 bits (661), Expect = 6.380e-73
Identity = 146/394 (37.06%), Postives = 219/394 (55.58%), Query Frame = 1
Query:    1 LDPEPTTMGEAQASSEWPQWKRAIAHEMDGQTTRGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEYSSPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEEIYVELPEAYRDSRKQVGLLRKAMYGLVHARLLW*KKFGIELEAKGFQRFEADPCVVRRILHGTVVVVIVVYVDDLLVASVTKRDDEQAVRDLCSCFPIKNLGEALYFLGCHITRDRNAGTLKFDQHQYIHTMAERFGVTKTSTIPSAARGKALSKSDSPQTDAEFEEMRQIP-YRKIVGALMWAATMTRPDISFAAYQLGKFNGNPGPTHWRASQKALQYLWCTRDLGITYGGEPGGETKLSAWIDVDYDTCPYTRRSVSGGAVL 1179
            +D  P ++ EA+AS EW +WK+A+  EM      G +   + P G+  +G + VF +K D+DG I +YK RLVAQG+ Q+ G+ Y E  +P     S+R  L + A    E  Q+DV  AYL  ++EEEIY+  PE Y D   +V  LRK +YGL  +   W ++F  +L + GF + EAD CV +RI  G + + I V+VDDLL+ S T  D  +   +L + F +K+LGE    +G  I RDR  GT+   Q QYI  +  RFG+     + +      + K    +TD    +   +  Y+ ++G+L++AA  TRPDIS A  +LG+F  NPGP HW A ++  +YL  TR+L + +     GE   + + D  + + P  R+S+SG   L
Sbjct:  875 IDNFPRSVAEAEASPEWAEWKKAMDEEMSVIKEMGTYTKEDLPAGRDTIGCKWVFLKKYDEDGNISRYKARLVAQGYSQIPGVDYTETFAPVVRLESVRAALGIAAIKDLEISQMDVKGAYLNGELEEEIYMRQPEGYDDGSGRVCRLRKTLYGLKQSGREWNREFDRKLTSIGFSKLEADHCVYKRIREGRMTI-ITVWVDDLLIFSETIEDMMETKGELHNLFDVKDLGEPKKIIGIEIKRDRENGTISLSQKQYIEGVLTRFGMQNARPVSTPLDPNVILKK---RTDDLVADPAMVGGYQSVIGSLLYAARGTRPDISHAVQELGQFASNPGPEHWTALKRVCRYLAGTRNLELVFRANEEGEIISTGYSDASFASNPDDRKSISGYTYL 1264          
BLAST of mRNA_H-elongata_contig81165.15772.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY)

HSP 1 Score: 259 bits (661), Expect = 6.670e-73
Identity = 153/404 (37.87%), Postives = 227/404 (56.19%), Query Frame = 1
Query:   10 EPTTMGEAQASSEWPQWKRAIAHEMDGQTTRGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEYSSPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEEIYVELPEAYRDSRKQVGLLRKAMYGLVHARLLW*KKFGIELEAKGFQRFEADPCVVRRILHGTVVVVIVVYVDDLLVASVTKRDDEQAVRDLCSCFPIKNLGEALYFLGCHITRDRNAGTLKFDQHQYIHTMAERFGVTKTSTIPSAARGKALSKSDSPQTDAEFEEMRQI---PYRKIVGALMWAATMTRPDISFAAYQLGKFNGNPGPTHWRASQKALQYLWCTRDLGITY----GGEPGGETKLSAWIDVDYDTCPYTRRSVSGGAVL*LAGPSV 1200
            EP ++ EAQAS EWP+W++A+  E D     G W++ + PK +  +G + VF+RK +K+G++ KYK RLVAQG+ Q+ G+ + E  +P     SIR +L++     WE  Q+DV  AYL  D++EEIY+  PE + D   ++  LRK +YGL  +   W +K   EL   G++R EADPCV         V +I V+VDDLL+ + + +  E+  RDL   F + +LGE    +G  I RDR AG ++  Q  YI ++ +R+ +   + +     G  L  + +   + E EE        Y  +VG+LM+AA  TRPDIS+A   L K+   P P HW A+++ L+YL  TRDL ITY       P G   +  + D DY +  + R+SVSG  V  L G +V
Sbjct:  906 EPRSLAEAQASPEWPEWEKAVKAEYDQLQGMGTWELQDLPKDRNAVGCKWVFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRICRLRKTLYGLKQSGREWNRKLHRELTELGYKRLEADPCVYLWERKEGEVQIITVWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLGEPQKIVGIEIERDREAGKIQISQQHYIESILKRYQLENANAV-----GMPLDPNVAFTAEDENEEADDRLAGGYASMVGSLMYAAVGTRPDISYAVQTLSKYTACPRPVHWTAAKRVLRYLAGTRDLHITYTRRDSDAPNGNI-IGGYTDTDYAS-DHDRKSVSGH-VFYLGGGAV 1301          
BLAST of mRNA_H-elongata_contig81165.15772.1 vs. uniprot
Match: A0A4Y9ZVS1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZVS1_9AGAM)

HSP 1 Score: 247 bits (631), Expect = 8.390e-73
Identity = 145/393 (36.90%), Postives = 216/393 (54.96%), Query Frame = 1
Query:   10 EPTTMGEAQASSEWPQWKRAIAHEMDGQTTRGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEYSSPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEEIYVELPEAYRD--SRKQVGLLRKAMYGLVHARLLW*KKFGIELEAKGFQRFEADPCVVRRILHGTVVVVIVVYVDDLLVASVTKRDDEQAVRDLCSCFPIKNLGEALYFLGCHITRDRNAGTLKFDQHQYIHTMAERFGVTKTSTIPSAARGK-ALSKSDSPQTDAEFEEMRQIPYRKIVGALMWAATMTRPDISFAAYQLGKFNGNPGPTHWRASQKALQYLWCTRDLGITYGGEPGGETKLSAWIDVDYDTCPYTRRSVSGGAVL 1179
            EP T+ EA+AS EWPQW+ AI  E+      G W++ E+P G  V+G+  VFK K D  G I KYK RLVAQGF Q+ G+ Y +  +P    +SIR++ ++ A   WE  Q+DV  AYL  D+EEEI+++ P  +      ++V  L K +YGL  A   W KK        GF R   D  V  R      + ++ V VDDL +A+ +  +       L   F + +LGE  + LG  I RDR   T+   Q  YI T+  RF +    ++ +A     +L+   SP T  ++++MR I YR+ +G+LM+AA  TRPD+S+A   L +F  NPG  HW A+++ ++YL  T++  +TYGG+      +  + D D+ +  + RRS+SG   L
Sbjct:   29 EPRTVDEAKASGEWPQWEAAIEDELGRMKKMGTWELAEKPPGANVVGSWWVFKIKRDASGAIAKYKARLVAQGFSQIPGVDYTDTFAPVAKLSSIRILAALAARFDWELHQMDVKNAYLNGDLEEEIFMKQPPGFPTPGQEQKVCHLFKPIYGLKQAGRRWYKKLCAAFLDMGFARSSVDHSVFFRHGPNGEIAIVAVSVDDLAIAANSVDEMSHIKSALKLKFEMTDLGEIHWLLGLEIKRDRRGRTISMLQRAYIDTILSRFNLQDAKSLTTAIDPSFSLTTDQSPSTPQQYDDMRNILYREAIGSLMYAAIGTRPDVSYAVTALSQFMQNPGHPHWEAAKRVMRYLKGTKEEWLTYGGD--NANGMEGFSDADWGSSDH-RRSISGYVFL 418          
BLAST of mRNA_H-elongata_contig81165.15772.1 vs. uniprot
Match: A0A5N6QA02_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6QA02_9ASTR)

HSP 1 Score: 253 bits (647), Expect = 3.480e-72
Identity = 145/405 (35.80%), Postives = 230/405 (56.79%), Query Frame = 1
Query:   10 EPTTMGEAQASSEWPQWKRAIAHEMDGQTTRGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEYSSPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEEIYVELPEAYRDSRKQ--VGLLRKAMYGLVHARLLW*KKFGIELEAKGFQRFEADPCVVRRILHGTVVVVIVVYVDDLLVASVTKRDDEQAVRDLCSCFPIKNLGEALYFLGCHITRDRNAGTLKFDQHQYIHTMAERFGVTKTS-TIPSAARGKALSKSDSPQTDAEFEEMRQIPYRKIVGALMWAATMTRPDISFAAYQLGKFNGNPGPTHWRASQKALQYLWCTRDLGITYGGEPGGETKLSAWIDVDYDTCPYTRRSVSGGAVL*LAGP-SVGSHE 1212
            +PT+  EA  S +  +WK A+  E+D      VW +VE P G   +G + VFK K+D +G IE++K RLVA+GF Q +GI Y+E  SP   + S+R+V++++A    E  Q+DV  A+L  D+ E+++++ PE +    ++  V  L+K++YGL  A   W  KF   ++  GF + + D C   + + G+   ++V+YVDD+L+AS +     ++ R L   F +K+LGEA Y +G  I RDR  G L   Q  YI  +  R+ +   S ++    +G        P+T+AE  +MR IPY  +VG+LM+A   TRPDI++ A  LG++  NPG  HW+A++K L+YL  T+D  +TY        ++  + D D+  C   ++S SG   +   GP S  SH+
Sbjct:  410 DPTSYHEAITSDQSSEWKIAMTDELDSMKKNDVWDLVELPNGVKPVGCKWVFKTKLDPNGNIERFKARLVAKGFTQKEGIDYQETFSPVSRKDSLRIVMALVAHFDLELHQMDVKTAFLNGDLYEDVFMKQPEGFMPEGQEHLVCKLKKSIYGLKQASRQWYLKFDEVMKKHGFLKNQVDQCTYLK-MSGSNFTILVLYVDDILLASNSLDMLHESKRLLSHNFDMKDLGEASYVIGIEIHRDRVNGLLGLSQKAYIDRVLTRYNMQHCSPSVAPVVKGDVFGSFQCPKTEAEKAQMRMIPYASVVGSLMYAQVCTRPDIAYIAGMLGRYQTNPGLDHWKAAKKVLRYLQGTKDFKLTY--RRSDNLEVVGYSDSDFAKCKDDKKSTSGYIFMLAGGPISWKSHK 811          
BLAST of mRNA_H-elongata_contig81165.15772.1 vs. uniprot
Match: A0A2P6S2B9_ROSCH (Putative RNA-directed DNA polymerase n=2 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6S2B9_ROSCH)

HSP 1 Score: 244 bits (624), Expect = 6.790e-72
Identity = 145/406 (35.71%), Postives = 225/406 (55.42%), Query Frame = 1
Query:   10 EPTTMGEAQASSEWPQWKRAIAHEMDGQTTRGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEYSSPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEEIYVELPEAYRDSRKQ--VGLLRKAMYGLVHARLLW*KKFGIELEAKGFQRFEADPCVVRRILHGTVVVVIVVYVDDLLVASVTKRDDEQAVRDLCSCFPIKNLGEALYFLGCHITRDRNAGTLKFDQHQYIHTMAERFGVTKTS-TIPSAARGKALSKSDSPQTDAEFEEMRQIPYRKIVGALMWAATMTRPDISFAAYQLGKFNGNPGPTHWRASQKALQYLWCTRDLGITYGGEPGGETKLSAWIDVDYDTCPYTRRSVSGGAVL*LAGPSVGSHECK 1218
            +P +  +A       +W  A+  E+       VW++VE P+G   +G + VFK K D +G IE+YK RLVA+GF Q +GI Y+E  SP   + S+R++++++A    E  Q+DV  A+L  ++EEE+++  PE +    K+  V  L+K++YGL  A   W  KF   + + GF+    D C+  ++  G+  + +++YVDD+L+AS       +    L   F +K++GEA Y +G  I RDR+ G L   Q  YI  + ERFG+ K S +I    +G   S    PQ + E + M +IPY   VG+L++A T TRPDISFA   LG++  NPG  HW+A++K ++YL  T++  +TY        ++  + D D   C  T +S SG   L LAG +V     K
Sbjct:   16 DPVSYSQAIQCENSEKWIDAMNDELKSMDQNKVWELVELPEGCKRVGCKWVFKTKRDSNGNIERYKARLVAKGFTQKEGIDYKETFSPVSKKDSLRIIMALVAHFDLELHQMDVKTAFLNGNLEEEVFMNQPEGFSSKGKEHMVCKLKKSIYGLKQASRQWYLKFNDTVVSFGFKENIVDRCIYLKV-SGSKFIFLILYVDDILLASSDLGLLHETKNFLSKKFEMKDMGEASYVIGIEIFRDRSRGLLGLSQKAYIERVLERFGMEKCSPSIAPIQKGDKFSLKQCPQNELERKGMERIPYASAVGSLVYAQTCTRPDISFAVGMLGRYQSNPGMDHWKATKKVMRYLQGTKEYMLTY--RRSDNLEVVGYSDSDLGGCLDTGKSTSGYLFL-LAGGAVSWRSAK 417          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81165.15772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A438HUL4_VITVI3.590e-7434.96Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N6NCI1_9ASTR5.630e-7434.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401GP19_9APHY3.450e-7337.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6M1Y8_9ASTR3.620e-7334.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9GV19_FAGSY4.820e-7336.95Integrase catalytic domain-containing protein n=6 ... [more]
A0A284QR88_ARMOS6.380e-7337.06Uncharacterized protein n=2 Tax=Armillaria TaxID=4... [more]
A0A401GYH9_9APHY6.670e-7337.87Uncharacterized protein n=6 Tax=Sparassis crispa T... [more]
A0A4Y9ZVS1_9AGAM8.390e-7336.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6QA02_9ASTR3.480e-7235.80Integrase catalytic domain-containing protein n=1 ... [more]
A0A2P6S2B9_ROSCH6.790e-7235.71Putative RNA-directed DNA polymerase n=2 Tax=Rosa ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81165contigH-elongata_contig81165:1572..2863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score119.4
Seed ortholog evalue1.5e-24
Seed eggNOG ortholog4558.Sb0010s005460.1
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37YYP@33090,3GQD7@35493,3IKKZ@38820,3M3FD@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1292
Cds size468
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81165.15772.1prot_H-elongata_contig81165.15772.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81165 1593..2060 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931218.325861-UTR-H-elongata_contig81165:1571..15921622931218.325861-UTR-H-elongata_contig81165:1571..1592Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81165 1572..1592 +
1691679746.3843446-UTR-H-elongata_contig81165:1571..15921691679746.3843446-UTR-H-elongata_contig81165:1571..1592Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81165 1572..1592 +
1622931218.3823693-UTR-H-elongata_contig81165:2060..28631622931218.3823693-UTR-H-elongata_contig81165:2060..2863Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81165 2061..2863 +
1691679746.407125-UTR-H-elongata_contig81165:2060..28631691679746.407125-UTR-H-elongata_contig81165:2060..2863Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81165 2061..2863 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931218.3519087-CDS-H-elongata_contig81165:1592..20601622931218.3519087-CDS-H-elongata_contig81165:1592..2060Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81165 1593..2060 +
1691679746.3952858-CDS-H-elongata_contig81165:1592..20601691679746.3952858-CDS-H-elongata_contig81165:1592..2060Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81165 1593..2060 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81165.15772.1

>prot_H-elongata_contig81165.15772.1 ID=prot_H-elongata_contig81165.15772.1|Name=mRNA_H-elongata_contig81165.15772.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=156bp
MGEAQASSEWPQWKRAIAHEMDGQTTRGVWQVVERPKGKTVLGTRVVFKR
KIDKDGRIEKYKCRLVAQGFRQVKGIHYEEYSSPTPAQASIRMVLSMIAA
LGWEAWQLDVDMAYLEADVEEEIYVELPEAYRDSRKQVGLLRKAMYGLVH
ARLLW*
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mRNA from alignment at H-elongata_contig81165:1572..2863+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81165.15772.1 ID=mRNA_H-elongata_contig81165.15772.1|Name=mRNA_H-elongata_contig81165.15772.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1292bp|location=Sequence derived from alignment at H-elongata_contig81165:1572..2863+ (Himanthalia elongata Himel1 dioecious)
CTAGACCCAGAGCCGACAACCATGGGTGAGGCGCAAGCGTCGTCGGAGTG GCCGCAATGGAAAAGAGCGATTGCGCACGAGATGGATGGACAAACTACTC GAGGCGTGTGGCAGGTGGTGGAACGCCCAAAAGGGAAAACGGTGTTGGGC ACGAGAGTAGTTTTCAAGCGCAAAATCGACAAGGATGGAAGGATCGAGAA GTATAAATGTCGCCTCGTGGCGCAGGGTTTCAGGCAGGTCAAAGGCATAC ACTACGAGGAATACTCCTCTCCGACTCCTGCGCAGGCCAGCATTAGGATG GTACTCAGCATGATTGCGGCTCTCGGCTGGGAGGCGTGGCAGCTGGACGT CGACATGGCCTACCTGGAGGCCGATGTGGAGGAGGAGATCTACGTTGAGC TCCCTGAGGCATACCGTGACTCCAGGAAGCAAGTCGGCCTACTAAGGAAG GCAATGTATGGACTTGTCCACGCCCGGCTGCTGTGGTAAAAAAAGTTCGG GATCGAGCTCGAGGCGAAGGGTTTTCAGAGATTTGAAGCCGACCCATGCG TGGTCCGGCGGATTCTTCACGGGACAGTGGTAGTTGTCATCGTGGTCTAC GTCGACGACCTGCTGGTTGCTAGTGTGACGAAACGTGACGATGAGCAAGC GGTGAGGGACCTGTGCTCCTGTTTCCCCATCAAGAATCTGGGGGAGGCTT TATATTTCCTGGGATGCCACATCACGCGGGACCGGAACGCCGGAACACTG AAGTTTGACCAGCATCAGTACATACACACTATGGCGGAACGTTTTGGCGT GACGAAGACCAGCACCATCCCTTCTGCGGCAAGAGGAAAAGCCCTTTCGA AATCAGACAGCCCGCAAACGGACGCAGAGTTTGAAGAAATGCGCCAGATT CCCTACCGAAAAATCGTTGGGGCCCTAATGTGGGCAGCGACGATGACCAG GCCCGACATTTCATTCGCTGCGTACCAACTGGGGAAATTCAACGGCAACC CGGGACCGACACACTGGAGGGCATCCCAGAAAGCGCTGCAATATTTATGG TGCACTCGGGACCTCGGGATCACCTATGGAGGGGAACCGGGGGGGGAGAC CAAGTTATCAGCGTGGATCGACGTAGACTACGACACCTGCCCGTACACGC GTCGCTCAGTGTCGGGAGGGGCGGTGTTGTAGCTGGCGGGGCCATCAGTT GGTTCTCACGAGTGCAAAAGGTAACGGCGGCGGCGTCGTCCGAATCGGAA TACGTCGCGCTGGCTGAGATGGTAAACGAGTTGCGTTTCCTA
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Coding sequence (CDS) from alignment at H-elongata_contig81165:1572..2863+

>mRNA_H-elongata_contig81165.15772.1 ID=mRNA_H-elongata_contig81165.15772.1|Name=mRNA_H-elongata_contig81165.15772.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=936bp|location=Sequence derived from alignment at H-elongata_contig81165:1572..2863+ (Himanthalia elongata Himel1 dioecious)
ATGGGTGAGGCGCAAGCGTCGTCGGAGTGGCCGCAATGGAAAAGAGCGAT
TGCGCACGAGATGGATGGACAAACTACTCGAGGCGTGTGGCAGGTGGTGG
AACGCCCAAAAGGGAAAACGGTGTTGGGCACGAGAGTAGTTTTCAAGCGC
AAAATCGACAAGGATGGAAGGATCGAGAAGTATAAATGTCGCCTCGTGGC
GCAGGGTTTCAGGCAGGTCAAAGGCATACACTACGAGGAATACTCCTCTC
CGACTCCTGCGCAGGCCAGCATTAGGATGGTACTCAGCATGATTGCGGCT
CTCGGCTGGGAGGCGTGGCAGCTGGACGTCGACATGGCCTACCTGGAGGC
CGATGTGGAGGAGGAGATCTACGTTGAGCTCCCTGAGGCATACCGTGACT
CCAGGAAGCAAGTCGGCCTACTAAGGAAGGCAATGTATGGACTTGTCCAC
GCCCGGCTGCTGTGGTAAATGGGTGAGGCGCAAGCGTCGTCGGAGTGGCC
GCAATGGAAAAGAGCGATTGCGCACGAGATGGATGGACAAACTACTCGAG
GCGTGTGGCAGGTGGTGGAACGCCCAAAAGGGAAAACGGTGTTGGGCACG
AGAGTAGTTTTCAAGCGCAAAATCGACAAGGATGGAAGGATCGAGAAGTA
TAAATGTCGCCTCGTGGCGCAGGGTTTCAGGCAGGTCAAAGGCATACACT
ACGAGGAATACTCCTCTCCGACTCCTGCGCAGGCCAGCATTAGGATGGTA
CTCAGCATGATTGCGGCTCTCGGCTGGGAGGCGTGGCAGCTGGACGTCGA
CATGGCCTACCTGGAGGCCGATGTGGAGGAGGAGATCTACGTTGAGCTCC
CTGAGGCATACCGTGACTCCAGGAAGCAAGTCGGCCTACTAAGGAAGGCA
ATGTATGGACTTGTCCACGCCCGGCTGCTGTGGTAA
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