mRNA_H-elongata_contig81165.15772.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig81165.15772.1 vs. uniprot
Match: A0A438HUL4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HUL4_VITVI) HSP 1 Score: 250 bits (639), Expect = 3.590e-74 Identity = 143/409 (34.96%), Postives = 232/409 (56.72%), Query Frame = 1
Query: 1 LDPEPTTMGEAQASSEWPQWKRAIAHEMDGQTTRGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEYSSPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEEIYVELPEAYR--DSRKQVGLLRKAMYGLVHARLLW*KKFGIELEAKGFQRFEADPCVVRRILHGTVVVVIVVYVDDLLVASVTKRDDEQAVRDLCSCFPIKNLGEALYFLGCHITRDRNAGTLKFDQHQYIHTMAERFGVTKTSTIPS-AARGKALSKSDSPQTDAEFEEMRQIPYRKIVGALMWAATMTRPDISFAAYQLGKFNGNPGPTHWRASQKALQYLWCTRDLGITYGGEPGGETKLSAWIDVDYDTCPYTRRSVSGGAVL*LAGPSVGSHECK 1218
L+ +P ++ + + SS +W +A+ EM GVW +VE PKG +G + +FK K D G I +YK RLVA+GF Q +GI Y+E SP ++ S R++++++A E Q+DV A+L +++E IY+ PE + DS++ V L++++YGL A W +KF + + GF+ D C+ + G+ +++V+YVDD+L+AS + +R L S F +K+LG A + LG I RDR+ G L Q YI + RFG++ + + A+G S P+ + E ++M + PY VG+LM+A TRPDI++ LG++ NPG HW+ +++ ++YL T+D +TY ++ A+ D D+ C +RRS SG + LAG +V K
Sbjct: 3 LEDDPISLSQVKQSSNSEKWIKAMKDEMKSMKDNGVWDLVELPKGVKPIGCKWIFKTKRDSKGNIVRYKARLVAKGFTQKEGIDYKETFSPVSSKDSFRIIMALVAHYDLELHQMDVKTAFLNGNIDETIYMVQPENFESNDSKQLVCRLKRSIYGLKQASRQWYRKFDQVITSFGFKENTVDQCIYLK-FSGSKFIILVLYVDDILLASSDVGLLHETMRFLSSKFDMKDLGNASFVLGIQIHRDRSRGILGLSQKAYIDKVLSRFGMSNYAPGDTPVAKGDKFSLHQCPKNELEKKDMERFPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKKAKRVMRYLQRTKDYMLTY--RRSSHLEIVAYSDSDFAGCLDSRRSTSG-CIFMLAGGAVSWKSVK 407
BLAST of mRNA_H-elongata_contig81165.15772.1 vs. uniprot
Match: A0A5N6NCI1_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NCI1_9ASTR) HSP 1 Score: 247 bits (630), Expect = 5.630e-74 Identity = 138/398 (34.67%), Postives = 226/398 (56.78%), Query Frame = 1
Query: 10 EPTTMGEAQASSEWPQWKRAIAHEMDGQTTRGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEYSSPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEEIYVELPEAYRDSRKQ--VGLLRKAMYGLVHARLLW*KKFGIELEAKGFQRFEADPCVVRRILHGTVVVVIVVYVDDLLVASVTKRDDEQAVRDLCSCFPIKNLGEALYFLGCHITRDRNAGTLKFDQHQYIHTMAERFGVTKTSTIPS-AARGKALSKSDSPQTDAEFEEMRQIPYRKIVGALMWAATMTRPDISFAAYQLGKFNGNPGPTHWRASQKALQYLWCTRDLGITYGGEPGGETKLSAWIDVDYDTCPYTRRSVSGGAVL*LAGP 1194
+P++ EA S + +W A+ E++ VW++VE G +G + V+K K+D +G +E++K RLVA+G+ Q +GI Y+E SP + S+R+V++++A E Q+DV A+L ++ E++Y+ PE ++ K+ V L+K+ YGL A W KF ++ GF + D C + + G+ ++V+YVDD+L+AS + ++ R L S F +K+LGEA Y +G I RDR +GTL Q YI+ + R+ + S + + +G P+T+ E E+MR IPY +VG++M+A TRPDI++ A LG++ NPG HW+A++K L+YL T+D +TY E + + D+ C ++S SG L GP
Sbjct: 35 DPSSYNEAITSDQSSEWHNAMIDELESMDKNNVWELVELLNGAKPVGCKWVYKTKLDPNGNVERFKARLVAKGYTQKEGIDYQETFSPVSQKDSLRIVMALVAHFDLELHQMDVKTAFLNGELYEDVYMTQPEGFKPKGKEHLVCKLKKSTYGLKQASRQWYLKFDEVMKKHGFVMNQVDQCNYLK-MSGSNFAILVIYVDDILLASNSLDMLHESKRLLSSNFDMKDLGEASYVIGIEIHRDRASGTLGLSQKAYINRVLTRYNMQHCSPLVAPVVKGDVFGTFQCPKTEVEKEQMRLIPYASVVGSIMYANVCTRPDIAYIAGMLGRYQSNPGLDHWKATKKVLRYLQGTKDYKLTYRRSDNRE--VIGYSGSDFAKCKDDKKSTSGYIFLLAGGP 429
BLAST of mRNA_H-elongata_contig81165.15772.1 vs. uniprot
Match: A0A401GP19_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GP19_9APHY) HSP 1 Score: 250 bits (639), Expect = 3.450e-73 Identity = 151/402 (37.56%), Postives = 227/402 (56.47%), Query Frame = 1
Query: 10 EPTTMGEAQASSEWPQWKRAIAHEMDGQTTRGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEYSSPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEEIYVELPEAYRDSRKQ--VGLLRKAMYGLVHARLLW*KKFGIELEAKGFQRFEADPCVV-RRILHGTVVVVIVVYVDDLLVASVTKRDDEQAVRDLCSCFPIKNLGEALYFLGCHITRDRNAGTLKFDQHQYIHTMAERFGV--TKTSTIPSAARGKALSKSDSPQTDAEFEEMRQIPYRKIVGALMWAATMTRPDISFAAYQLGKFNGNPGPTHWRASQKALQYLWCTRDLGITYGGEPGGETKLSAWIDVDYDTCPYTRRSVSGGAVL*LAGPSV 1200
+P ++ EA S+EWP+WK AI EM + G + +VE PK ++G++ VF+ K + + IE YK RLVAQGF QV GI + E +P ASI ++L++ A WE Q+DV AYL D+EEEIY++ P + K+ V L++ +YGL + + KK EL + G R + D CV R ++++I + VDD +A TK R++ + F + +LGE + LG + RDR+ TL QH YI + RF + K+ T P G LS P T +FE+M+ IPYR+++G+LM+AA TRPDI++A L +F NPG HW A+++ +YL TR+ +T+G G + + D D+ + + R S+SG L L G +V
Sbjct: 111 DPASLNEAMQSTEWPKWKEAIVKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEREIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIHLILALAACYDWELHQMDVKGAYLNGDLEEEIYMQQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVFWLRNEEDVLILLIALSVDDSTIAG-TKAAVFWFKREISTRFKMSDLGEMHWILGIEVQRDRDVRTLSLSQHVYIDMILTRFNLQDAKSLTTP-LDPGTVLSIHQCPSTPRQFEDMKNIPYREVIGSLMYAALGTRPDIAYAITALSQFMQNPGQPHWEAAKRVFRYLAGTRERWLTFGETTDG---VEGFSDADWGSAEH-RHSISGYVFL-LDGSAV 505
BLAST of mRNA_H-elongata_contig81165.15772.1 vs. uniprot
Match: A0A5N6M1Y8_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6M1Y8_9ASTR) HSP 1 Score: 249 bits (636), Expect = 3.620e-73 Identity = 141/405 (34.81%), Postives = 231/405 (57.04%), Query Frame = 1
Query: 10 EPTTMGEAQASSEWPQWKRAIAHEMDGQTTRGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEYSSPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEEIYVELPEAYRDSRKQ--VGLLRKAMYGLVHARLLW*KKFGIELEAKGFQRFEADPCVVRRILHGTVVVVIVVYVDDLLVASVTKRDDEQAVRDLCSCFPIKNLGEALYFLGCHITRDRNAGTLKFDQHQYIHTMAERFGVTKTS-TIPSAARGKALSKSDSPQTDAEFEEMRQIPYRKIVGALMWAATMTRPDISFAAYQLGKFNGNPGPTHWRASQKALQYLWCTRDLGITYGGEPGGETKLSAWIDVDYDTCPYTRRSVSGGAVL*LAGP-SVGSHE 1212
+PTT +A + QW A+ E+ T VW + E P G +G + V+K K+D +G IE+YK RLVA+G+ Q +GI Y+E SP + S+R+V++++A E Q+DV A+L D+ E+++++ PE + K+ V L K++YGL A W KF ++ F + + D C+ +I G+ V++V+YVDD+L+AS ++ R L + F +K+LGEA Y +G I R+R+ GTL Q YI + +RF + + S ++ +G P+++AE ++MR IPY +VG+LM+A TRPDI++ LG++ NPG HW+A++K L+YL T++ +TY + ++ + D+ C ++S SG + GP S SH+
Sbjct: 109 DPTTFKDAMNCDQSTQWLDAMKDELKSMKTNNVWTLTELPTGAKPVGCKWVYKTKLDPNGNIERYKARLVAKGYTQREGIDYQETFSPVSRKDSLRIVMALVAHFDLELHQMDVKTAFLNGDLHEDVFMKQPEGFEPKGKEHMVCKLNKSIYGLKQASRQWYIKFDEVMKKHNFIKNQVDQCIYLKI-SGSKFVILVLYVDDILLASNNLDMLYESKRLLSANFDMKDLGEASYVIGIEIHRNRSIGTLGLSQKAYIERILKRFNMQQCSPSVAPVVKGDNFGSYQCPKSEAEIDQMRLIPYASVVGSLMYAQVCTRPDIAYITGMLGRYQSNPGLDHWKAAKKVLRYLQGTKEYKLTY--RRSDDLEVIGYTYSDFAKCKDDKKSTSGYIFMLSGGPISWKSHK 510
BLAST of mRNA_H-elongata_contig81165.15772.1 vs. uniprot
Match: A0A2N9GV19_FAGSY (Integrase catalytic domain-containing protein n=6 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GV19_FAGSY) HSP 1 Score: 254 bits (648), Expect = 4.820e-73 Identity = 150/406 (36.95%), Postives = 230/406 (56.65%), Query Frame = 1
Query: 10 EPTTMGEAQASSEWPQWKRAIAHEMDGQTTRGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEYSSPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEEIYVELPEAYRDSRKQ--VGLLRKAMYGLVHARLLW*KKFGIELEAKGFQRFEADPCVVRRILHGTVVVVIVVYVDDLLVASVTKRDDEQAVRDLCSCFPIKNLGEALYFLGCHITRDRNAGTLKFDQHQYIHTMAERFGVTKTSTIPS-AARGKALSKSDSPQTDAEFEEMRQIPYRKIVGALMWAATMTRPDISFAAYQLGKFNGNPGPTHWRASQKALQYLWCTRDLGITYGGEPGGETKLSAWIDVDYDTCPYTRRSVSGGAVL*LAGPSVGSHECK 1218
+P++ +A SS+ +W A+ E+ VW +V+ P G +G + VFK K D G+IE+YK RLVA+GF Q +G+ Y+E SP ++ S R+V++++A E Q+DV A+L D+ E++Y+ P+ ++ S K+ V L+K++YGL A W KF + + GF+ D C+ +I G+ ++ +V+YVDD+L+AS + R L F +K+LGEA + LG I RDR+ G L Q YI + ERF ++ + + +G LSK PQ D E EM++IPY VG+LM+A TRPDI+FA LG+F +PG HWRA++K L+YL T+D +TY ++ + D DY C +S SG + LAG ++ K
Sbjct: 277 DPSSYSQAIQSSQSTKWIDAMVDELKSMDNNNVWDLVDLPNGCRPIGCKWVFKTKKDSTGKIERYKARLVAKGFSQKEGVDYKETFSPVSSKDSFRIVMALVAHFDLELHQMDVKTAFLNGDLTEDVYMLQPDGFQVSGKEHMVCKLKKSIYGLKQASRQWYLKFDNVVTSFGFKENPVDHCIYLKI-SGSKIIFLVLYVDDILLASNDLGLLRETKRFLFDNFEMKDLGEASFVLGIEIHRDRSRGILGLSQKSYISRVLERFNMSTCAAGDAPVVKGDKLSKLQCPQNDLERNEMKKIPYASAVGSLMYAQVCTRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYLQRTKDFMLTY--RRSDLLEVVGYADADYAGCADDLKSTSGYVFM-LAGGAISWKSVK 678
BLAST of mRNA_H-elongata_contig81165.15772.1 vs. uniprot
Match: A0A284QR88_ARMOS (Uncharacterized protein n=2 Tax=Armillaria TaxID=47424 RepID=A0A284QR88_ARMOS) HSP 1 Score: 259 bits (661), Expect = 6.380e-73 Identity = 146/394 (37.06%), Postives = 219/394 (55.58%), Query Frame = 1
Query: 1 LDPEPTTMGEAQASSEWPQWKRAIAHEMDGQTTRGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEYSSPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEEIYVELPEAYRDSRKQVGLLRKAMYGLVHARLLW*KKFGIELEAKGFQRFEADPCVVRRILHGTVVVVIVVYVDDLLVASVTKRDDEQAVRDLCSCFPIKNLGEALYFLGCHITRDRNAGTLKFDQHQYIHTMAERFGVTKTSTIPSAARGKALSKSDSPQTDAEFEEMRQIP-YRKIVGALMWAATMTRPDISFAAYQLGKFNGNPGPTHWRASQKALQYLWCTRDLGITYGGEPGGETKLSAWIDVDYDTCPYTRRSVSGGAVL 1179
+D P ++ EA+AS EW +WK+A+ EM G + + P G+ +G + VF +K D+DG I +YK RLVAQG+ Q+ G+ Y E +P S+R L + A E Q+DV AYL ++EEEIY+ PE Y D +V LRK +YGL + W ++F +L + GF + EAD CV +RI G + + I V+VDDLL+ S T D + +L + F +K+LGE +G I RDR GT+ Q QYI + RFG+ + + + K +TD + + Y+ ++G+L++AA TRPDIS A +LG+F NPGP HW A ++ +YL TR+L + + GE + + D + + P R+S+SG L
Sbjct: 875 IDNFPRSVAEAEASPEWAEWKKAMDEEMSVIKEMGTYTKEDLPAGRDTIGCKWVFLKKYDEDGNISRYKARLVAQGYSQIPGVDYTETFAPVVRLESVRAALGIAAIKDLEISQMDVKGAYLNGELEEEIYMRQPEGYDDGSGRVCRLRKTLYGLKQSGREWNREFDRKLTSIGFSKLEADHCVYKRIREGRMTI-ITVWVDDLLIFSETIEDMMETKGELHNLFDVKDLGEPKKIIGIEIKRDRENGTISLSQKQYIEGVLTRFGMQNARPVSTPLDPNVILKK---RTDDLVADPAMVGGYQSVIGSLLYAARGTRPDISHAVQELGQFASNPGPEHWTALKRVCRYLAGTRNLELVFRANEEGEIISTGYSDASFASNPDDRKSISGYTYL 1264
BLAST of mRNA_H-elongata_contig81165.15772.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY) HSP 1 Score: 259 bits (661), Expect = 6.670e-73 Identity = 153/404 (37.87%), Postives = 227/404 (56.19%), Query Frame = 1
Query: 10 EPTTMGEAQASSEWPQWKRAIAHEMDGQTTRGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEYSSPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEEIYVELPEAYRDSRKQVGLLRKAMYGLVHARLLW*KKFGIELEAKGFQRFEADPCVVRRILHGTVVVVIVVYVDDLLVASVTKRDDEQAVRDLCSCFPIKNLGEALYFLGCHITRDRNAGTLKFDQHQYIHTMAERFGVTKTSTIPSAARGKALSKSDSPQTDAEFEEMRQI---PYRKIVGALMWAATMTRPDISFAAYQLGKFNGNPGPTHWRASQKALQYLWCTRDLGITY----GGEPGGETKLSAWIDVDYDTCPYTRRSVSGGAVL*LAGPSV 1200
EP ++ EAQAS EWP+W++A+ E D G W++ + PK + +G + VF+RK +K+G++ KYK RLVAQG+ Q+ G+ + E +P SIR +L++ WE Q+DV AYL D++EEIY+ PE + D ++ LRK +YGL + W +K EL G++R EADPCV V +I V+VDDLL+ + + + E+ RDL F + +LGE +G I RDR AG ++ Q YI ++ +R+ + + + G L + + + E EE Y +VG+LM+AA TRPDIS+A L K+ P P HW A+++ L+YL TRDL ITY P G + + D DY + + R+SVSG V L G +V
Sbjct: 906 EPRSLAEAQASPEWPEWEKAVKAEYDQLQGMGTWELQDLPKDRNAVGCKWVFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRICRLRKTLYGLKQSGREWNRKLHRELTELGYKRLEADPCVYLWERKEGEVQIITVWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLGEPQKIVGIEIERDREAGKIQISQQHYIESILKRYQLENANAV-----GMPLDPNVAFTAEDENEEADDRLAGGYASMVGSLMYAAVGTRPDISYAVQTLSKYTACPRPVHWTAAKRVLRYLAGTRDLHITYTRRDSDAPNGNI-IGGYTDTDYAS-DHDRKSVSGH-VFYLGGGAV 1301
BLAST of mRNA_H-elongata_contig81165.15772.1 vs. uniprot
Match: A0A4Y9ZVS1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZVS1_9AGAM) HSP 1 Score: 247 bits (631), Expect = 8.390e-73 Identity = 145/393 (36.90%), Postives = 216/393 (54.96%), Query Frame = 1
Query: 10 EPTTMGEAQASSEWPQWKRAIAHEMDGQTTRGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEYSSPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEEIYVELPEAYRD--SRKQVGLLRKAMYGLVHARLLW*KKFGIELEAKGFQRFEADPCVVRRILHGTVVVVIVVYVDDLLVASVTKRDDEQAVRDLCSCFPIKNLGEALYFLGCHITRDRNAGTLKFDQHQYIHTMAERFGVTKTSTIPSAARGK-ALSKSDSPQTDAEFEEMRQIPYRKIVGALMWAATMTRPDISFAAYQLGKFNGNPGPTHWRASQKALQYLWCTRDLGITYGGEPGGETKLSAWIDVDYDTCPYTRRSVSGGAVL 1179
EP T+ EA+AS EWPQW+ AI E+ G W++ E+P G V+G+ VFK K D G I KYK RLVAQGF Q+ G+ Y + +P +SIR++ ++ A WE Q+DV AYL D+EEEI+++ P + ++V L K +YGL A W KK GF R D V R + ++ V VDDL +A+ + + L F + +LGE + LG I RDR T+ Q YI T+ RF + ++ +A +L+ SP T ++++MR I YR+ +G+LM+AA TRPD+S+A L +F NPG HW A+++ ++YL T++ +TYGG+ + + D D+ + + RRS+SG L
Sbjct: 29 EPRTVDEAKASGEWPQWEAAIEDELGRMKKMGTWELAEKPPGANVVGSWWVFKIKRDASGAIAKYKARLVAQGFSQIPGVDYTDTFAPVAKLSSIRILAALAARFDWELHQMDVKNAYLNGDLEEEIFMKQPPGFPTPGQEQKVCHLFKPIYGLKQAGRRWYKKLCAAFLDMGFARSSVDHSVFFRHGPNGEIAIVAVSVDDLAIAANSVDEMSHIKSALKLKFEMTDLGEIHWLLGLEIKRDRRGRTISMLQRAYIDTILSRFNLQDAKSLTTAIDPSFSLTTDQSPSTPQQYDDMRNILYREAIGSLMYAAIGTRPDVSYAVTALSQFMQNPGHPHWEAAKRVMRYLKGTKEEWLTYGGD--NANGMEGFSDADWGSSDH-RRSISGYVFL 418
BLAST of mRNA_H-elongata_contig81165.15772.1 vs. uniprot
Match: A0A5N6QA02_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6QA02_9ASTR) HSP 1 Score: 253 bits (647), Expect = 3.480e-72 Identity = 145/405 (35.80%), Postives = 230/405 (56.79%), Query Frame = 1
Query: 10 EPTTMGEAQASSEWPQWKRAIAHEMDGQTTRGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEYSSPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEEIYVELPEAYRDSRKQ--VGLLRKAMYGLVHARLLW*KKFGIELEAKGFQRFEADPCVVRRILHGTVVVVIVVYVDDLLVASVTKRDDEQAVRDLCSCFPIKNLGEALYFLGCHITRDRNAGTLKFDQHQYIHTMAERFGVTKTS-TIPSAARGKALSKSDSPQTDAEFEEMRQIPYRKIVGALMWAATMTRPDISFAAYQLGKFNGNPGPTHWRASQKALQYLWCTRDLGITYGGEPGGETKLSAWIDVDYDTCPYTRRSVSGGAVL*LAGP-SVGSHE 1212
+PT+ EA S + +WK A+ E+D VW +VE P G +G + VFK K+D +G IE++K RLVA+GF Q +GI Y+E SP + S+R+V++++A E Q+DV A+L D+ E+++++ PE + ++ V L+K++YGL A W KF ++ GF + + D C + + G+ ++V+YVDD+L+AS + ++ R L F +K+LGEA Y +G I RDR G L Q YI + R+ + S ++ +G P+T+AE +MR IPY +VG+LM+A TRPDI++ A LG++ NPG HW+A++K L+YL T+D +TY ++ + D D+ C ++S SG + GP S SH+
Sbjct: 410 DPTSYHEAITSDQSSEWKIAMTDELDSMKKNDVWDLVELPNGVKPVGCKWVFKTKLDPNGNIERFKARLVAKGFTQKEGIDYQETFSPVSRKDSLRIVMALVAHFDLELHQMDVKTAFLNGDLYEDVFMKQPEGFMPEGQEHLVCKLKKSIYGLKQASRQWYLKFDEVMKKHGFLKNQVDQCTYLK-MSGSNFTILVLYVDDILLASNSLDMLHESKRLLSHNFDMKDLGEASYVIGIEIHRDRVNGLLGLSQKAYIDRVLTRYNMQHCSPSVAPVVKGDVFGSFQCPKTEAEKAQMRMIPYASVVGSLMYAQVCTRPDIAYIAGMLGRYQTNPGLDHWKAAKKVLRYLQGTKDFKLTY--RRSDNLEVVGYSDSDFAKCKDDKKSTSGYIFMLAGGPISWKSHK 811
BLAST of mRNA_H-elongata_contig81165.15772.1 vs. uniprot
Match: A0A2P6S2B9_ROSCH (Putative RNA-directed DNA polymerase n=2 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6S2B9_ROSCH) HSP 1 Score: 244 bits (624), Expect = 6.790e-72 Identity = 145/406 (35.71%), Postives = 225/406 (55.42%), Query Frame = 1
Query: 10 EPTTMGEAQASSEWPQWKRAIAHEMDGQTTRGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEEYSSPTPAQASIRMVLSMIAALGWEAWQLDVDMAYLEADVEEEIYVELPEAYRDSRKQ--VGLLRKAMYGLVHARLLW*KKFGIELEAKGFQRFEADPCVVRRILHGTVVVVIVVYVDDLLVASVTKRDDEQAVRDLCSCFPIKNLGEALYFLGCHITRDRNAGTLKFDQHQYIHTMAERFGVTKTS-TIPSAARGKALSKSDSPQTDAEFEEMRQIPYRKIVGALMWAATMTRPDISFAAYQLGKFNGNPGPTHWRASQKALQYLWCTRDLGITYGGEPGGETKLSAWIDVDYDTCPYTRRSVSGGAVL*LAGPSVGSHECK 1218
+P + +A +W A+ E+ VW++VE P+G +G + VFK K D +G IE+YK RLVA+GF Q +GI Y+E SP + S+R++++++A E Q+DV A+L ++EEE+++ PE + K+ V L+K++YGL A W KF + + GF+ D C+ ++ G+ + +++YVDD+L+AS + L F +K++GEA Y +G I RDR+ G L Q YI + ERFG+ K S +I +G S PQ + E + M +IPY VG+L++A T TRPDISFA LG++ NPG HW+A++K ++YL T++ +TY ++ + D D C T +S SG L LAG +V K
Sbjct: 16 DPVSYSQAIQCENSEKWIDAMNDELKSMDQNKVWELVELPEGCKRVGCKWVFKTKRDSNGNIERYKARLVAKGFTQKEGIDYKETFSPVSKKDSLRIIMALVAHFDLELHQMDVKTAFLNGNLEEEVFMNQPEGFSSKGKEHMVCKLKKSIYGLKQASRQWYLKFNDTVVSFGFKENIVDRCIYLKV-SGSKFIFLILYVDDILLASSDLGLLHETKNFLSKKFEMKDMGEASYVIGIEIFRDRSRGLLGLSQKAYIERVLERFGMEKCSPSIAPIQKGDKFSLKQCPQNELERKGMERIPYASAVGSLVYAQTCTRPDISFAVGMLGRYQSNPGMDHWKATKKVMRYLQGTKEYMLTY--RRSDNLEVVGYSDSDLGGCLDTGKSTSGYLFL-LAGGAVSWRSAK 417 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81165.15772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig81165.15772.1 >prot_H-elongata_contig81165.15772.1 ID=prot_H-elongata_contig81165.15772.1|Name=mRNA_H-elongata_contig81165.15772.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=156bp MGEAQASSEWPQWKRAIAHEMDGQTTRGVWQVVERPKGKTVLGTRVVFKRback to top mRNA from alignment at H-elongata_contig81165:1572..2863+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig81165.15772.1 ID=mRNA_H-elongata_contig81165.15772.1|Name=mRNA_H-elongata_contig81165.15772.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1292bp|location=Sequence derived from alignment at H-elongata_contig81165:1572..2863+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig81165:1572..2863+ >mRNA_H-elongata_contig81165.15772.1 ID=mRNA_H-elongata_contig81165.15772.1|Name=mRNA_H-elongata_contig81165.15772.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=936bp|location=Sequence derived from alignment at H-elongata_contig81165:1572..2863+ (Himanthalia elongata Himel1 dioecious)back to top |