mRNA_H-elongata_contig76563.15327.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig76563.15327.1 vs. uniprot
Match: D7FQB7_ECTSI (UDG domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQB7_ECTSI) HSP 1 Score: 260 bits (665), Expect = 1.060e-83 Identity = 135/218 (61.93%), Postives = 151/218 (69.27%), Query Frame = 1
Query: 1 PEWPLRLIIVGHNPSEKAWELGHYYANPSNRMWKLLATAGIVPAGFAACNDDDCPITCGVGFTDQGFSHPGTISGVFKKTELHAWRQGFYDRLAAHANRAAATVTTVNKEGA------GTSAPRAAKKDSKLTTGTAQNGSADIEGGYPQVVAFAGKRQVSNSIVIAPPR---------FARFRFGLQSADLRPPGWPFPARFTDVFVLPSSSGAAAM 609
PEWPLRLIIVGHNPSEKAWELGHYY NPSNRMWKLL++AGI+P GF A ND+DCPIT GVGFTD GFS PGT+S F K ELH+WR+GFYDRL AHA RAAATV A GT + AA K + TA A IE G P+++AFAGKRQ A + FRFGLQ ADLRPPGWPFPA T++FV+PSSSGAAAM
Sbjct: 77 PEWPLRLIIVGHNPSEKAWELGHYYGNPSNRMWKLLSSAGIIPPGFTASNDEDCPITSGVGFTDVGFSIPGTVSSEFGKKELHSWRRGFYDRLTAHAERAAATVAASKSYPAEPATERGTDSTSAAGKGADQGVATAATIKAKIEDGCPRIIAFAGKRQWEELFFDASAKDKAKTKGGKTGPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAM 294
BLAST of mRNA_H-elongata_contig76563.15327.1 vs. uniprot
Match: A0A4D9CYU0_9STRA (UDG domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYU0_9STRA) HSP 1 Score: 169 bits (427), Expect = 1.920e-48 Identity = 93/204 (45.59%), Postives = 111/204 (54.41%), Query Frame = 1
Query: 1 PEWPLRLIIVGHNPSEKAWELGHYYANPSNRMWKLLATAGIVPAGFAACNDDDCPITCGVGFTDQGFSHPGTISGVFKKTELHAWRQGFYDRLAAHANRAAATVTTVNKEGAGTSAPRAAKKDSKLTTGTAQNGSADIEGGYPQVVAFAGKRQVSNSIVIAPP-RFARFRFGLQSADLRPPGWPFPARFTDVFVLPSSSGAAAM 609
PE PLRL++VGHNPS AW GHYY+NPSNRMW LL I+P G+ A +DD CP TCG+GFTD G+ +PGT S FK LHAWR+ Y RL +HA RA G P++VAF GKRQ + + +GLQSA RP G+PF A T +FVL SSSGAAAM
Sbjct: 101 PERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNVKIIPEGYTAKDDDRCPSTCGIGFTDLGYGNPGTDSAKFKAPVLHAWRRSLYQRLLSHARRA---------------------------------------GAPPKIVAFTGKRQFRELFFDSKAYKSISISYGLQSA--RPDGFPFNANETKLFVLTSSSGAAAM 263
BLAST of mRNA_H-elongata_contig76563.15327.1 vs. uniprot
Match: W7TJD2_9STRA (Uracil-dna glycosylase superfamily n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJD2_9STRA) HSP 1 Score: 167 bits (424), Expect = 6.700e-47 Identity = 93/204 (45.59%), Postives = 111/204 (54.41%), Query Frame = 1
Query: 1 PEWPLRLIIVGHNPSEKAWELGHYYANPSNRMWKLLATAGIVPAGFAACNDDDCPITCGVGFTDQGFSHPGTISGVFKKTELHAWRQGFYDRLAAHANRAAATVTTVNKEGAGTSAPRAAKKDSKLTTGTAQNGSADIEGGYPQVVAFAGKRQVSNSIVIAPP-RFARFRFGLQSADLRPPGWPFPARFTDVFVLPSSSGAAAM 609
PE PLRL++VGHNPS AW GHYY+NPSNRMW LL I+P G+ A +DD CP TCG+GFTD G+ +PGT S FK LHAWR+ Y RL +HA RA G P++VAF GKRQ + + +GLQSA RP G+PF A T +FVL SSSGAAAM
Sbjct: 204 PERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNVKIIPEGYTAKDDDRCPSTCGIGFTDLGYGNPGTDSSNFKAPVLHAWRRSLYQRLLSHARRA---------------------------------------GAPPKIVAFTGKRQFRELFFDSKAYKSISISYGLQSA--RPDGFPFNADETKLFVLTSSSGAAAM 366
BLAST of mRNA_H-elongata_contig76563.15327.1 vs. uniprot
Match: A0A150H3T8_GONPE (UDG domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H3T8_GONPE) HSP 1 Score: 147 bits (371), Expect = 2.930e-40 Identity = 90/204 (44.12%), Postives = 107/204 (52.45%), Query Frame = 1
Query: 10 PLRLIIVGHNPSEKAWELGHYYANPSNRMWKLLATAGIVPAGFAACNDDD-CPITCGVGFTDQGFSHPGTISGVFKKTELHAWRQGFYDRLAAHANRAAATVTTVNKEGAGTSAPRAAKKDSKLTTGTAQNGSADIEGGYPQVVAFAGKRQVSNSIVIAPP---RFARFRFGLQSADLRPPGWPFPARFTDVFVLPSSSGAAAM 609
PLRL+IVGHNPSE AW+ GHYY+NPSN MW++L + GI P G DDD P GVGF D G HPGT S F AW + FY RL AH RAAA++ T G G P++VAF+GKRQ + + R FG QS P GWPFP R T+V+V S+SGAAAM
Sbjct: 49 PLRLVIVGHNPSEHAWQSGHYYSNPSNLMWRILISTGIAPPGTRGAEDDDRLPREAGVGFLDVGCGHPGTDSSSFASEVFDAWSRAFYSRLKAHMARAAASIG--------------------CTCGLC---------GAPRLVAFSGKRQFLELLNVGRSGRDRAKTVEFGPQSE--LPRGWPFP-RSTEVWVCSSTSGAAAM 220
BLAST of mRNA_H-elongata_contig76563.15327.1 vs. uniprot
Match: A0A383VAW5_TETOB (UDG domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VAW5_TETOB) HSP 1 Score: 149 bits (375), Expect = 3.630e-40 Identity = 89/211 (42.18%), Postives = 109/211 (51.66%), Query Frame = 1
Query: 10 PLRLIIVGHNPSEKAWELGHYYANPSNRMWKLLATAGIVPAGFAACNDDDC-PITCGVGFTDQGFSHPGTISGVFKKTELHAWRQGFYDRLAAHANRAAATVTTVNKEGAGTSAPRAAKKDSKLTTGTAQNGSADIEGGYPQVVAFAGKR---QVSNSIVIAPPRFARFR-------FGLQSADLRPPGWPFPARFTDVFVLPSSSGAAAM 609
PLRLI++GHNPSE AW GHYY+NPSNRMW++L +AGI P G + DD P GVGFTD G PGT S +F + WR FY RLAAH A+ ++ G S R G P++VAF GKR ++ N R + R GLQ PPGWP PA T+V+VL S+SGAA M
Sbjct: 125 PLRLILIGHNPSEHAWHTGHYYSNPSNRMWRILESAGITPPGVSGPEADDVMPAAVGVGFTDVGSGQPGTDSSLFTAADFQGWRAAFYARLAAHMKAASDSI--------GCSCGRC---------------------GAPRLVAFTGKRHYLELLNLDASGQQRRGKDRVASAAVTLGLQPQQQLPPGWPLPADKTEVWVLTSTSGAAPM 306
BLAST of mRNA_H-elongata_contig76563.15327.1 vs. uniprot
Match: I0YXE6_COCSC (Uncharacterized protein (Fragment) n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YXE6_COCSC) HSP 1 Score: 136 bits (343), Expect = 1.040e-36 Identity = 81/206 (39.32%), Postives = 106/206 (51.46%), Query Frame = 1
Query: 4 EWPLRLIIVGHNPSEKAWELGHYYANPSNRMWKLLATAGIVPAGFAACNDDDCPIT-CGVGFTDQGFSHPGTISGVFKKTELHAWRQGFYDRLAAHANRAAATVTTVNKEGAGTSAPRAAKKDSKLTTGTAQNGSADIEGGYPQVVAFAGKRQVSNSIVIAPP---RFARFRFGLQSADLRPPGWPFPARFTDVFVLPSSSGAAAM 609
+ PLRLI+ G+NPS+ AW GHYY++P+N MW++L GI PA DD+ +T GVGF D G HPGT+ F +W FY RL H +RA+ K+S G G P VV FAGKRQ + + ++ + GLQ +RP GWPFPA T+V+VLPS+SGAA M
Sbjct: 13 DMPLRLIVGGNNPSDHAWSTGHYYSHPANWMWRILRKTGIAPAWVKGAQDDERMVTEAGVGFLDVGCGHPGTLLSEFSSQTFQSWAPAFYTRLKMHMDRAS--------------------KNSGCVCGKC---------GAPAVVGFAGKRQWMELLNVGRKGRDKYTKLDHGLQH--MRPEGWPFPAS-TEVWVLPSTSGAAPM 186
BLAST of mRNA_H-elongata_contig76563.15327.1 vs. uniprot
Match: A0A8J4AKJ5_9CHLO (Uncharacterized protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AKJ5_9CHLO) HSP 1 Score: 144 bits (362), Expect = 1.210e-36 Identity = 83/204 (40.69%), Postives = 104/204 (50.98%), Query Frame = 1
Query: 10 PLRLIIVGHNPSEKAWELGHYYANPSNRMWKLLATAGIVPAGFAACNDDD-CPITCGVGFTDQGFSHPGTISGVFKKTELHAWRQGFYDRLAAHANRAAATVTTVNKEGAGTSAPRAAKKDSKLTTGTAQNGSADIEGGYPQVVAFAGKRQVSNSIVIAPP---RFARFRFGLQSADLRPPGWPFPARFTDVFVLPSSSGAAAM 609
PLRL+IVGHNPS AW+ GHYY++P+N MW+LL GI P G + DDD P GVGF D G HPGT S F +W Q FY RL H +RA+A++ + G G P +VAF+GKR + + P R G Q L P GWPFPA T+V+V S+SGAAA+
Sbjct: 328 PLRLVIVGHNPSAHAWQSGHYYSHPANHMWRLLIATGIAPPGTRSAEDDDRLPAAAGVGFLDVGCGHPGTDSSSFSSEVFKSWSQAFYARLKGHMDRASASIG--------------------CSCGLC---------GAPSLVAFSGKRHYLELLNVGKPPKERVKTVEHGPQK--LLPAGWPFPAAATEVWVCSSTSGAAAL 500
BLAST of mRNA_H-elongata_contig76563.15327.1 vs. uniprot
Match: A0A836C5L0_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C5L0_9CHLO) HSP 1 Score: 140 bits (352), Expect = 6.940e-36 Identity = 84/204 (41.18%), Postives = 104/204 (50.98%), Query Frame = 1
Query: 10 PLRLIIVGHNPSEKAWELGHYYANPSNRMWKLLATAGIVPAGFAACNDDD-CPITCGVGFTDQGFSHPGTISGVFKKTELHAWRQGFYDRLAAHANRAAATVTTVNKEGAGTSAPRAAKKDSKLTTGTAQNGSADIEGGYPQVVAFAGKRQVSNSIVIAPPRFARFR---FGLQSADLRPPGWPFPARFTDVFVLPSSSGAAAM 609
PLRL++VGHNPS AW GHYY+NPSN MW++L GI P G DDD P GVGF D G HPGT S F + W FY RL AH RA A++ G + P A G P +VAF+GKRQ + + R + +G Q+ L P GWP P R T+V+V S+SGAAA+
Sbjct: 172 PLRLVVVGHNPSAHAWASGHYYSNPSNHMWRILIATGIAPPGTRGAQDDDRLPGAAGVGFLDVGCGHPGTDSSQFSSADFERWSSAFYARLRAHVARAGASI--------GCTCPGGAC-------------------GAPSLVAFSGKRQFLELLNVGRSGRGRVKSVEYGPQT--LLPTGWPLP-RSTEVWVCSSTSGAAAL 345
BLAST of mRNA_H-elongata_contig76563.15327.1 vs. uniprot
Match: A0A5J4XIV9_9CHLO (DNA glycosylase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XIV9_9CHLO) HSP 1 Score: 137 bits (344), Expect = 8.510e-36 Identity = 84/205 (40.98%), Postives = 107/205 (52.20%), Query Frame = 1
Query: 10 PLRLIIVGHNPSEKAWELGHYYANPSNRMWKLLATAGIVPAGFAACNDDDCPIT-CGVGFTDQGFSHPGTISGVFKKTELHAWRQGFYDRLAAHANRAAATV-TTVNKEGAGTSAPRAAKKDSKLTTGTAQNGSADIEGGYPQVVAFAGKRQVSNSIVIAPP---RFARFRFGLQSADLRPPGWPFPARFTDVFVLPSSSGAAAM 609
PLRLIIVGHNPS+ AW GHYY+NPSN MW++L I P+ DDC + GVGFTD G PGTIS F W GFY+RL+AH +RA+ ++ T K GA P +VAF+GKRQ S I + +F G Q+ +RP GWP P T+V+V+ S+SGA+ M
Sbjct: 117 PLRLIIVGHNPSDHAWRTGHYYSNPSNWMWRILIATRIAPSHVTGPQHDDCMASDAGVGFTDVGSGIPGTISSQFDSATFQGWGAGFYERLSAHMSRASDSIGCTCGKCGA------------------------------PALVAFSGKRQWSELINTGRKGKNKLTKFATGPQN--MRPEGWPLPDS-TEVWVMTSTSGASPM 288
BLAST of mRNA_H-elongata_contig76563.15327.1 vs. uniprot
Match: A0A8J4FEP7_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FEP7_9CHLO) HSP 1 Score: 139 bits (350), Expect = 3.480e-35 Identity = 84/204 (41.18%), Postives = 105/204 (51.47%), Query Frame = 1
Query: 10 PLRLIIVGHNPSEKAWELGHYYANPSNRMWKLLATAGIVPAGFAACNDDD-CPITCGVGFTDQGFSHPGTISGVFKKTELHAWRQGFYDRLAAHANRAAATVTTVNKEGAGTSAPRAAKKDSKLTTGTAQNGSADIEGGYPQVVAFAGKRQVSNSIVI--AP-PRFARFRFGLQSADLRPPGWPFPARFTDVFVLPSSSGAAAM 609
PLRL+IVGHNPS AW+ GHYY++P+N MW+LL GI P G + DDD P GVGF D G HPGT S F +W Q FY +L AH RA+A++ + G G P +VAF+GKR + + AP R G Q L P GWPFPA T+V+V S+SGAAA+
Sbjct: 260 PLRLVIVGHNPSAHAWQSGHYYSHPANHMWRLLIATGIAPPGTRSAEDDDRLPAAAGVGFLDVGCGHPGTDSASFSSEVFKSWSQVFYAQLKAHMGRASASIG--------------------CSCGLC---------GAPSLVAFSGKRHYLELLNVDKAPRERVKSVEHGPQQ--LLPGGWPFPATTTEVWVCSSTSGAAAL 432 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76563.15327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig76563.15327.1 >prot_H-elongata_contig76563.15327.1 ID=prot_H-elongata_contig76563.15327.1|Name=mRNA_H-elongata_contig76563.15327.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=203bp PEWPLRLIIVGHNPSEKAWELGHYYANPSNRMWKLLATAGIVPAGFAACNback to top mRNA from alignment at H-elongata_contig76563:808..2012- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig76563.15327.1 ID=mRNA_H-elongata_contig76563.15327.1|Name=mRNA_H-elongata_contig76563.15327.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1205bp|location=Sequence derived from alignment at H-elongata_contig76563:808..2012- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig76563:808..2012- >mRNA_H-elongata_contig76563.15327.1 ID=mRNA_H-elongata_contig76563.15327.1|Name=mRNA_H-elongata_contig76563.15327.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1218bp|location=Sequence derived from alignment at H-elongata_contig76563:808..2012- (Himanthalia elongata Himel1 dioecious)back to top |