mRNA_H-elongata_contig76563.15327.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76563.15327.1
Unique NamemRNA_H-elongata_contig76563.15327.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig76563.15327.1 vs. uniprot
Match: D7FQB7_ECTSI (UDG domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQB7_ECTSI)

HSP 1 Score: 260 bits (665), Expect = 1.060e-83
Identity = 135/218 (61.93%), Postives = 151/218 (69.27%), Query Frame = 1
Query:    1 PEWPLRLIIVGHNPSEKAWELGHYYANPSNRMWKLLATAGIVPAGFAACNDDDCPITCGVGFTDQGFSHPGTISGVFKKTELHAWRQGFYDRLAAHANRAAATVTTVNKEGA------GTSAPRAAKKDSKLTTGTAQNGSADIEGGYPQVVAFAGKRQVSNSIVIAPPR---------FARFRFGLQSADLRPPGWPFPARFTDVFVLPSSSGAAAM 609
            PEWPLRLIIVGHNPSEKAWELGHYY NPSNRMWKLL++AGI+P GF A ND+DCPIT GVGFTD GFS PGT+S  F K ELH+WR+GFYDRL AHA RAAATV       A      GT +  AA K +     TA    A IE G P+++AFAGKRQ       A  +            FRFGLQ ADLRPPGWPFPA  T++FV+PSSSGAAAM
Sbjct:   77 PEWPLRLIIVGHNPSEKAWELGHYYGNPSNRMWKLLSSAGIIPPGFTASNDEDCPITSGVGFTDVGFSIPGTVSSEFGKKELHSWRRGFYDRLTAHAERAAATVAASKSYPAEPATERGTDSTSAAGKGADQGVATAATIKAKIEDGCPRIIAFAGKRQWEELFFDASAKDKAKTKGGKTGPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAM 294          
BLAST of mRNA_H-elongata_contig76563.15327.1 vs. uniprot
Match: A0A4D9CYU0_9STRA (UDG domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYU0_9STRA)

HSP 1 Score: 169 bits (427), Expect = 1.920e-48
Identity = 93/204 (45.59%), Postives = 111/204 (54.41%), Query Frame = 1
Query:    1 PEWPLRLIIVGHNPSEKAWELGHYYANPSNRMWKLLATAGIVPAGFAACNDDDCPITCGVGFTDQGFSHPGTISGVFKKTELHAWRQGFYDRLAAHANRAAATVTTVNKEGAGTSAPRAAKKDSKLTTGTAQNGSADIEGGYPQVVAFAGKRQVSNSIVIAPP-RFARFRFGLQSADLRPPGWPFPARFTDVFVLPSSSGAAAM 609
            PE PLRL++VGHNPS  AW  GHYY+NPSNRMW LL    I+P G+ A +DD CP TCG+GFTD G+ +PGT S  FK   LHAWR+  Y RL +HA RA                                       G  P++VAF GKRQ       +   +     +GLQSA  RP G+PF A  T +FVL SSSGAAAM
Sbjct:  101 PERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNVKIIPEGYTAKDDDRCPSTCGIGFTDLGYGNPGTDSAKFKAPVLHAWRRSLYQRLLSHARRA---------------------------------------GAPPKIVAFTGKRQFRELFFDSKAYKSISISYGLQSA--RPDGFPFNANETKLFVLTSSSGAAAM 263          
BLAST of mRNA_H-elongata_contig76563.15327.1 vs. uniprot
Match: W7TJD2_9STRA (Uracil-dna glycosylase superfamily n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJD2_9STRA)

HSP 1 Score: 167 bits (424), Expect = 6.700e-47
Identity = 93/204 (45.59%), Postives = 111/204 (54.41%), Query Frame = 1
Query:    1 PEWPLRLIIVGHNPSEKAWELGHYYANPSNRMWKLLATAGIVPAGFAACNDDDCPITCGVGFTDQGFSHPGTISGVFKKTELHAWRQGFYDRLAAHANRAAATVTTVNKEGAGTSAPRAAKKDSKLTTGTAQNGSADIEGGYPQVVAFAGKRQVSNSIVIAPP-RFARFRFGLQSADLRPPGWPFPARFTDVFVLPSSSGAAAM 609
            PE PLRL++VGHNPS  AW  GHYY+NPSNRMW LL    I+P G+ A +DD CP TCG+GFTD G+ +PGT S  FK   LHAWR+  Y RL +HA RA                                       G  P++VAF GKRQ       +   +     +GLQSA  RP G+PF A  T +FVL SSSGAAAM
Sbjct:  204 PERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNVKIIPEGYTAKDDDRCPSTCGIGFTDLGYGNPGTDSSNFKAPVLHAWRRSLYQRLLSHARRA---------------------------------------GAPPKIVAFTGKRQFRELFFDSKAYKSISISYGLQSA--RPDGFPFNADETKLFVLTSSSGAAAM 366          
BLAST of mRNA_H-elongata_contig76563.15327.1 vs. uniprot
Match: A0A150H3T8_GONPE (UDG domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H3T8_GONPE)

HSP 1 Score: 147 bits (371), Expect = 2.930e-40
Identity = 90/204 (44.12%), Postives = 107/204 (52.45%), Query Frame = 1
Query:   10 PLRLIIVGHNPSEKAWELGHYYANPSNRMWKLLATAGIVPAGFAACNDDD-CPITCGVGFTDQGFSHPGTISGVFKKTELHAWRQGFYDRLAAHANRAAATVTTVNKEGAGTSAPRAAKKDSKLTTGTAQNGSADIEGGYPQVVAFAGKRQVSNSIVIAPP---RFARFRFGLQSADLRPPGWPFPARFTDVFVLPSSSGAAAM 609
            PLRL+IVGHNPSE AW+ GHYY+NPSN MW++L + GI P G     DDD  P   GVGF D G  HPGT S  F      AW + FY RL AH  RAAA++                      T G           G P++VAF+GKRQ    + +      R     FG QS    P GWPFP R T+V+V  S+SGAAAM
Sbjct:   49 PLRLVIVGHNPSEHAWQSGHYYSNPSNLMWRILISTGIAPPGTRGAEDDDRLPREAGVGFLDVGCGHPGTDSSSFASEVFDAWSRAFYSRLKAHMARAAASIG--------------------CTCGLC---------GAPRLVAFSGKRQFLELLNVGRSGRDRAKTVEFGPQSE--LPRGWPFP-RSTEVWVCSSTSGAAAM 220          
BLAST of mRNA_H-elongata_contig76563.15327.1 vs. uniprot
Match: A0A383VAW5_TETOB (UDG domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VAW5_TETOB)

HSP 1 Score: 149 bits (375), Expect = 3.630e-40
Identity = 89/211 (42.18%), Postives = 109/211 (51.66%), Query Frame = 1
Query:   10 PLRLIIVGHNPSEKAWELGHYYANPSNRMWKLLATAGIVPAGFAACNDDDC-PITCGVGFTDQGFSHPGTISGVFKKTELHAWRQGFYDRLAAHANRAAATVTTVNKEGAGTSAPRAAKKDSKLTTGTAQNGSADIEGGYPQVVAFAGKR---QVSNSIVIAPPRFARFR-------FGLQSADLRPPGWPFPARFTDVFVLPSSSGAAAM 609
            PLRLI++GHNPSE AW  GHYY+NPSNRMW++L +AGI P G +    DD  P   GVGFTD G   PGT S +F   +   WR  FY RLAAH   A+ ++        G S  R                      G P++VAF GKR   ++ N       R  + R        GLQ     PPGWP PA  T+V+VL S+SGAA M
Sbjct:  125 PLRLILIGHNPSEHAWHTGHYYSNPSNRMWRILESAGITPPGVSGPEADDVMPAAVGVGFTDVGSGQPGTDSSLFTAADFQGWRAAFYARLAAHMKAASDSI--------GCSCGRC---------------------GAPRLVAFTGKRHYLELLNLDASGQQRRGKDRVASAAVTLGLQPQQQLPPGWPLPADKTEVWVLTSTSGAAPM 306          
BLAST of mRNA_H-elongata_contig76563.15327.1 vs. uniprot
Match: I0YXE6_COCSC (Uncharacterized protein (Fragment) n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YXE6_COCSC)

HSP 1 Score: 136 bits (343), Expect = 1.040e-36
Identity = 81/206 (39.32%), Postives = 106/206 (51.46%), Query Frame = 1
Query:    4 EWPLRLIIVGHNPSEKAWELGHYYANPSNRMWKLLATAGIVPAGFAACNDDDCPIT-CGVGFTDQGFSHPGTISGVFKKTELHAWRQGFYDRLAAHANRAAATVTTVNKEGAGTSAPRAAKKDSKLTTGTAQNGSADIEGGYPQVVAFAGKRQVSNSIVIAPP---RFARFRFGLQSADLRPPGWPFPARFTDVFVLPSSSGAAAM 609
            + PLRLI+ G+NPS+ AW  GHYY++P+N MW++L   GI PA      DD+  +T  GVGF D G  HPGT+   F      +W   FY RL  H +RA+                    K+S    G           G P VV FAGKRQ    + +      ++ +   GLQ   +RP GWPFPA  T+V+VLPS+SGAA M
Sbjct:   13 DMPLRLIVGGNNPSDHAWSTGHYYSHPANWMWRILRKTGIAPAWVKGAQDDERMVTEAGVGFLDVGCGHPGTLLSEFSSQTFQSWAPAFYTRLKMHMDRAS--------------------KNSGCVCGKC---------GAPAVVGFAGKRQWMELLNVGRKGRDKYTKLDHGLQH--MRPEGWPFPAS-TEVWVLPSTSGAAPM 186          
BLAST of mRNA_H-elongata_contig76563.15327.1 vs. uniprot
Match: A0A8J4AKJ5_9CHLO (Uncharacterized protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AKJ5_9CHLO)

HSP 1 Score: 144 bits (362), Expect = 1.210e-36
Identity = 83/204 (40.69%), Postives = 104/204 (50.98%), Query Frame = 1
Query:   10 PLRLIIVGHNPSEKAWELGHYYANPSNRMWKLLATAGIVPAGFAACNDDD-CPITCGVGFTDQGFSHPGTISGVFKKTELHAWRQGFYDRLAAHANRAAATVTTVNKEGAGTSAPRAAKKDSKLTTGTAQNGSADIEGGYPQVVAFAGKRQVSNSIVIAPP---RFARFRFGLQSADLRPPGWPFPARFTDVFVLPSSSGAAAM 609
            PLRL+IVGHNPS  AW+ GHYY++P+N MW+LL   GI P G  +  DDD  P   GVGF D G  HPGT S  F      +W Q FY RL  H +RA+A++                      + G           G P +VAF+GKR     + +  P   R      G Q   L P GWPFPA  T+V+V  S+SGAAA+
Sbjct:  328 PLRLVIVGHNPSAHAWQSGHYYSHPANHMWRLLIATGIAPPGTRSAEDDDRLPAAAGVGFLDVGCGHPGTDSSSFSSEVFKSWSQAFYARLKGHMDRASASIG--------------------CSCGLC---------GAPSLVAFSGKRHYLELLNVGKPPKERVKTVEHGPQK--LLPAGWPFPAAATEVWVCSSTSGAAAL 500          
BLAST of mRNA_H-elongata_contig76563.15327.1 vs. uniprot
Match: A0A836C5L0_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C5L0_9CHLO)

HSP 1 Score: 140 bits (352), Expect = 6.940e-36
Identity = 84/204 (41.18%), Postives = 104/204 (50.98%), Query Frame = 1
Query:   10 PLRLIIVGHNPSEKAWELGHYYANPSNRMWKLLATAGIVPAGFAACNDDD-CPITCGVGFTDQGFSHPGTISGVFKKTELHAWRQGFYDRLAAHANRAAATVTTVNKEGAGTSAPRAAKKDSKLTTGTAQNGSADIEGGYPQVVAFAGKRQVSNSIVIAPPRFARFR---FGLQSADLRPPGWPFPARFTDVFVLPSSSGAAAM 609
            PLRL++VGHNPS  AW  GHYY+NPSN MW++L   GI P G     DDD  P   GVGF D G  HPGT S  F   +   W   FY RL AH  RA A++        G + P  A                    G P +VAF+GKRQ    + +      R +   +G Q+  L P GWP P R T+V+V  S+SGAAA+
Sbjct:  172 PLRLVVVGHNPSAHAWASGHYYSNPSNHMWRILIATGIAPPGTRGAQDDDRLPGAAGVGFLDVGCGHPGTDSSQFSSADFERWSSAFYARLRAHVARAGASI--------GCTCPGGAC-------------------GAPSLVAFSGKRQFLELLNVGRSGRGRVKSVEYGPQT--LLPTGWPLP-RSTEVWVCSSTSGAAAL 345          
BLAST of mRNA_H-elongata_contig76563.15327.1 vs. uniprot
Match: A0A5J4XIV9_9CHLO (DNA glycosylase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XIV9_9CHLO)

HSP 1 Score: 137 bits (344), Expect = 8.510e-36
Identity = 84/205 (40.98%), Postives = 107/205 (52.20%), Query Frame = 1
Query:   10 PLRLIIVGHNPSEKAWELGHYYANPSNRMWKLLATAGIVPAGFAACNDDDCPIT-CGVGFTDQGFSHPGTISGVFKKTELHAWRQGFYDRLAAHANRAAATV-TTVNKEGAGTSAPRAAKKDSKLTTGTAQNGSADIEGGYPQVVAFAGKRQVSNSIVIAPP---RFARFRFGLQSADLRPPGWPFPARFTDVFVLPSSSGAAAM 609
            PLRLIIVGHNPS+ AW  GHYY+NPSN MW++L    I P+       DDC  +  GVGFTD G   PGTIS  F       W  GFY+RL+AH +RA+ ++  T  K GA                              P +VAF+GKRQ S  I        +  +F  G Q+  +RP GWP P   T+V+V+ S+SGA+ M
Sbjct:  117 PLRLIIVGHNPSDHAWRTGHYYSNPSNWMWRILIATRIAPSHVTGPQHDDCMASDAGVGFTDVGSGIPGTISSQFDSATFQGWGAGFYERLSAHMSRASDSIGCTCGKCGA------------------------------PALVAFSGKRQWSELINTGRKGKNKLTKFATGPQN--MRPEGWPLPDS-TEVWVMTSTSGASPM 288          
BLAST of mRNA_H-elongata_contig76563.15327.1 vs. uniprot
Match: A0A8J4FEP7_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FEP7_9CHLO)

HSP 1 Score: 139 bits (350), Expect = 3.480e-35
Identity = 84/204 (41.18%), Postives = 105/204 (51.47%), Query Frame = 1
Query:   10 PLRLIIVGHNPSEKAWELGHYYANPSNRMWKLLATAGIVPAGFAACNDDD-CPITCGVGFTDQGFSHPGTISGVFKKTELHAWRQGFYDRLAAHANRAAATVTTVNKEGAGTSAPRAAKKDSKLTTGTAQNGSADIEGGYPQVVAFAGKRQVSNSIVI--AP-PRFARFRFGLQSADLRPPGWPFPARFTDVFVLPSSSGAAAM 609
            PLRL+IVGHNPS  AW+ GHYY++P+N MW+LL   GI P G  +  DDD  P   GVGF D G  HPGT S  F      +W Q FY +L AH  RA+A++                      + G           G P +VAF+GKR     + +  AP  R      G Q   L P GWPFPA  T+V+V  S+SGAAA+
Sbjct:  260 PLRLVIVGHNPSAHAWQSGHYYSHPANHMWRLLIATGIAPPGTRSAEDDDRLPAAAGVGFLDVGCGHPGTDSASFSSEVFKSWSQVFYAQLKAHMGRASASIG--------------------CSCGLC---------GAPSLVAFSGKRHYLELLNVDKAPRERVKSVEHGPQQ--LLPGGWPFPATTTEVWVCSSTSGAAAL 432          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76563.15327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQB7_ECTSI1.060e-8361.93UDG domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A4D9CYU0_9STRA1.920e-4845.59UDG domain-containing protein n=1 Tax=Nannochlorop... [more]
W7TJD2_9STRA6.700e-4745.59Uracil-dna glycosylase superfamily n=1 Tax=Nannoch... [more]
A0A150H3T8_GONPE2.930e-4044.12UDG domain-containing protein n=1 Tax=Gonium pecto... [more]
A0A383VAW5_TETOB3.630e-4042.18UDG domain-containing protein n=1 Tax=Tetradesmus ... [more]
I0YXE6_COCSC1.040e-3639.32Uncharacterized protein (Fragment) n=1 Tax=Coccomy... [more]
A0A8J4AKJ5_9CHLO1.210e-3640.69Uncharacterized protein n=2 Tax=Volvox africanus T... [more]
A0A836C5L0_9CHLO6.940e-3641.18Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A5J4XIV9_9CHLO8.510e-3640.98DNA glycosylase n=1 Tax=Trebouxia sp. A1-2 TaxID=2... [more]
A0A8J4FEP7_9CHLO3.480e-3541.18Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76563contigH-elongata_contig76563:808..2012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score260.0
Seed ortholog evalue9.2e-67
Seed eggNOG ortholog2880.D7FQB7
KEGG koko:K20813
KEGG Pathwayko03410,map03410
EggNOG OGs2CGCP@1,2RYQ9@2759
EC3.2.2.29
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUracil-DNA glycosylase-like
Ec32 orthologEc-01_006710.1
Exons3
Model size609
Cds size609
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76563.15327.1prot_H-elongata_contig76563.15327.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76563 808..2012 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931169.8871748-CDS-H-elongata_contig76563:807..9151622931169.8871748-CDS-H-elongata_contig76563:807..915Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76563 808..915 -
1691679726.9757185-CDS-H-elongata_contig76563:807..9151691679726.9757185-CDS-H-elongata_contig76563:807..915Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76563 808..915 -
1622931169.905591-CDS-H-elongata_contig76563:1228..15371622931169.905591-CDS-H-elongata_contig76563:1228..1537Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76563 1229..1537 -
1691679726.9888136-CDS-H-elongata_contig76563:1228..15371691679726.9888136-CDS-H-elongata_contig76563:1228..1537Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76563 1229..1537 -
1622931169.921925-CDS-H-elongata_contig76563:1820..20121622931169.921925-CDS-H-elongata_contig76563:1820..2012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76563 1821..2012 -
1691679726.9985435-CDS-H-elongata_contig76563:1820..20121691679726.9985435-CDS-H-elongata_contig76563:1820..2012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76563 1821..2012 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76563.15327.1

>prot_H-elongata_contig76563.15327.1 ID=prot_H-elongata_contig76563.15327.1|Name=mRNA_H-elongata_contig76563.15327.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=203bp
PEWPLRLIIVGHNPSEKAWELGHYYANPSNRMWKLLATAGIVPAGFAACN
DDDCPITCGVGFTDQGFSHPGTISGVFKKTELHAWRQGFYDRLAAHANRA
AATVTTVNKEGAGTSAPRAAKKDSKLTTGTAQNGSADIEGGYPQVVAFAG
KRQVSNSIVIAPPRFARFRFGLQSADLRPPGWPFPARFTDVFVLPSSSGA
AAM
back to top

mRNA from alignment at H-elongata_contig76563:808..2012-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76563.15327.1 ID=mRNA_H-elongata_contig76563.15327.1|Name=mRNA_H-elongata_contig76563.15327.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1205bp|location=Sequence derived from alignment at H-elongata_contig76563:808..2012- (Himanthalia elongata Himel1 dioecious)
CCAGAATGGCCGTTGAGACTGATCATCGTGGGCCACAACCCGAGCGAGAA GGCCTGGGAACTCGGCCACTACTACGCAAACCCGTCGAACCGCATGTGGA AACTTCTCGCAACTGCTGGCATCGTTCCGGCTGGCTTCGCCGCTTGCAAC GACGACGACTGCCCAATCACCTGCGGAGTTGGCTTCACGGATGTGGCGAG TTTCCCCTTGAGGGCTTGAACCGACATATGGGAGTCTAGATCGTGCACCC TTCTGGTGAAACGAATCTTGATAGATCGGCGGCGTGAAAGTGTCAGTTCA ACAGGGGGGTTGGCGCTGAATCTCCTGATCTCATCGTTATGTTGTCGCTT TCGGGGGGCTGTCGTAAAACACATGGTAGAGCAACCGCAATCAATTGCTG TAAAAAAACAAAACAAAAAAAAACGGAGGTCATCGGGCGTCCTAAAATTT TCAGCTCATTTGCTCCATCGCCGAGCAGGGATTTTCGCACCCTGGCACGA TCTCCGGTGTCTTCAAAAAGACGGAGCTACACGCTTGGCGGCAAGGTTTC TACGATCGTCTGGCGGCCCACGCCAATCGAGCGGCGGCGACAGTAACCAC AGTGAACAAAGAAGGAGCGGGGACGTCAGCCCCAAGGGCAGCCAAGAAGG ATTCGAAACTAACAACGGGAACCGCGCAAAACGGATCCGCGGACATCGAG GGGGGATATCCTCAAGTCGTGGCGTTTGCGGGCAAGCGACAAGTAAGCAA CAGTATCGTCATTGCTCCGCCGCGGTTTGCTCGGGTGCTGAGTCGTGTTT GCCAATACCGTTAGGGGCTAGGGTGGAGTGAACTGTGGAAGGTTTCTTGA CCGAAAGGAAGACGGTTCAAATCGAGCTCTAGGTAATTACTCTTGTACTT TGGTGTTAGGTAGGTCGGTATTGACTACAAGCCCCGATCCCCGTATTGCA CTCTACACACGCGCGATATTTCGGCGTCAACCTGACTGCGTCCTTATGCC TACGGTCGACACTTATGTGCGTTGACAGTTCGAGGAACTCTTCTTCGACG CCACGGCGAAAGCGAGGGTGCGGACGAAGGGAGGTAAGGCCGGGCAGTTC CGTTTTGGTCTGCAGTCCGCCGACCTCCGCCCGCCTGGTTGGCCGTTCCC CGCGCGATTCACGGACGTGTTTGTTCTACCCAGTAGCAGCGGCGCCGCAG CGATG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig76563:808..2012-

>mRNA_H-elongata_contig76563.15327.1 ID=mRNA_H-elongata_contig76563.15327.1|Name=mRNA_H-elongata_contig76563.15327.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1218bp|location=Sequence derived from alignment at H-elongata_contig76563:808..2012- (Himanthalia elongata Himel1 dioecious)
CCAGAATGGCCGTTGAGACTGATCATCGTGGGCCACAACCCGAGCGAGAA
GGCCTGGGAACTCGGCCACTACTACGCAAACCCGTCGAACCGCATGTGGA
AACTTCTCGCAACTGCTGGCATCGTTCCGGCTGGCTTCGCCGCTTGCAAC
GACGACGACTGCCCAATCACCTGCGGAGTTGGCTTCACGGATCCAGAATG
GCCGTTGAGACTGATCATCGTGGGCCACAACCCGAGCGAGAAGGCCTGGG
AACTCGGCCACTACTACGCAAACCCGTCGAACCGCATGTGGAAACTTCTC
GCAACTGCTGGCATCGTTCCGGCTGGCTTCGCCGCTTGCAACGACGACGA
CTGCCCAATCACCTGCGGAGTTGGCTTCACGGATCAGGGATTTTCGCACC
CTGGCACGATCTCCGGTGTCTTCAAAAAGACGGAGCTACACGCTTGGCGG
CAAGGTTTCTACGATCGTCTGGCGGCCCACGCCAATCGAGCGGCGGCGAC
AGTAACCACAGTGAACAAAGAAGGAGCGGGGACGTCAGCCCCAAGGGCAG
CCAAGAAGGATTCGAAACTAACAACGGGAACCGCGCAAAACGGATCCGCG
GACATCGAGGGGGGATATCCTCAAGTCGTGGCGTTTGCGGGCAAGCGACA
AGTAAGCAACAGTATCGTCATTGCTCCGCCGCGGTTTGCTCGGCAGGGAT
TTTCGCACCCTGGCACGATCTCCGGTGTCTTCAAAAAGACGGAGCTACAC
GCTTGGCGGCAAGGTTTCTACGATCGTCTGGCGGCCCACGCCAATCGAGC
GGCGGCGACAGTAACCACAGTGAACAAAGAAGGAGCGGGGACGTCAGCCC
CAAGGGCAGCCAAGAAGGATTCGAAACTAACAACGGGAACCGCGCAAAAC
GGATCCGCGGACATCGAGGGGGGATATCCTCAAGTCGTGGCGTTTGCGGG
CAAGCGACAAGTAAGCAACAGTATCGTCATTGCTCCGCCGCGGTTTGCTC
GGTTCCGTTTTGGTCTGCAGTCCGCCGACCTCCGCCCGCCTGGTTGGCCG
TTCCCCGCGCGATTCACGGACGTGTTTGTTCTACCCAGTAGCAGCGGCGC
CGCAGCGATGTTCCGTTTTGGTCTGCAGTCCGCCGACCTCCGCCCGCCTG
GTTGGCCGTTCCCCGCGCGATTCACGGACGTGTTTGTTCTACCCAGTAGC
AGCGGCGCCGCAGCGATG
back to top