prot_H-elongata_contig70098.14664.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig70098.14664.1
Unique Nameprot_H-elongata_contig70098.14664.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length55
Homology
BLAST of mRNA_H-elongata_contig70098.14664.1 vs. uniprot
Match: A0A6H5JJ47_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ47_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 6.120e-16
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 0
Query:   12 GGYDPNEDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD 55
            GG   +EDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD
Sbjct:   88 GGLVDDEDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD 131          
BLAST of mRNA_H-elongata_contig70098.14664.1 vs. uniprot
Match: D7FHZ3_ECTSI (DNA-directed RNA polymerase subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ3_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 6.160e-16
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 0
Query:   12 GGYDPNEDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD 55
            GG   +EDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD
Sbjct:   87 GGLMDDEDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD 130          
BLAST of mRNA_H-elongata_contig70098.14664.1 vs. uniprot
Match: A0A0P0W1F5_ORYSJ (DNA-directed RNA polymerase (Fragment) n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=A0A0P0W1F5_ORYSJ)

HSP 1 Score: 63.5 bits (153), Expect = 3.500e-11
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 0
Query:    7 EGGELGGYDPNEDELD---PLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD 55
            E G +GG +  ++E D   P EE+I+QEDAW VISAYF EKGLVRQQLDSFD
Sbjct:   62 EYGAVGGEEMEDEEADGDAPDEEEITQEDAWAVISAYFEEKGLVRQQLDSFD 113          
BLAST of mRNA_H-elongata_contig70098.14664.1 vs. uniprot
Match: A0A835YQ41_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ41_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.680e-11
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 0
Query:   17 NEDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD 55
            NE ELDP EE+I+QEDAW VIS+YF+EKGLVRQQLDSFD
Sbjct:    5 NEYELDPHEEEITQEDAWQVISSYFAEKGLVRQQLDSFD 43          
BLAST of mRNA_H-elongata_contig70098.14664.1 vs. uniprot
Match: A0A0P0W1G0_ORYSJ (DNA-directed RNA polymerase n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=A0A0P0W1G0_ORYSJ)

HSP 1 Score: 63.5 bits (153), Expect = 6.110e-11
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 0
Query:    7 EGGELGGYDPNEDELD---PLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD 55
            E G +GG +  ++E D   P EE+I+QEDAW VISAYF EKGLVRQQLDSFD
Sbjct:   30 EYGAVGGEEMEDEEADGDAPDEEEITQEDAWAVISAYFEEKGLVRQQLDSFD 81          
BLAST of mRNA_H-elongata_contig70098.14664.1 vs. uniprot
Match: A0A7C8ZGU7_OPUST (DNA-directed RNA polymerase n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8ZGU7_OPUST)

HSP 1 Score: 60.5 bits (145), Expect = 1.830e-10
Identity = 30/36 (83.33%), Postives = 31/36 (86.11%), Query Frame = 0
Query:   20 ELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD 55
            E D  EEDI+QEDAW VISAYF EKGLVRQQLDSFD
Sbjct:   24 EEDDEEEDITQEDAWAVISAYFEEKGLVRQQLDSFD 59          
BLAST of mRNA_H-elongata_contig70098.14664.1 vs. uniprot
Match: A0A2U1KVS3_ARTAN (DNA-directed RNA polymerase n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1KVS3_ARTAN)

HSP 1 Score: 60.1 bits (144), Expect = 2.530e-10
Identity = 33/53 (62.26%), Postives = 38/53 (71.70%), Query Frame = 0
Query:    3 EVGVEGGELGGYDPNEDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD 55
            EV      +GG D  E+  +  EEDI+QEDAW VIS+YF EKGLVRQQLDSFD
Sbjct:   14 EVDYNNNTMGG-DEGEEYGEDEEEDITQEDAWAVISSYFEEKGLVRQQLDSFD 65          
BLAST of mRNA_H-elongata_contig70098.14664.1 vs. uniprot
Match: A0A3P6C3H5_BRAOL (DNA-directed RNA polymerase (Fragment) n=2 Tax=Brassica TaxID=3705 RepID=A0A3P6C3H5_BRAOL)

HSP 1 Score: 61.6 bits (148), Expect = 9.820e-10
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 0
Query:   15 DPNEDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD 55
            DPN  E +  EE+I+QEDAW VISAYF EKGLVRQQLDSFD
Sbjct:   10 DPNYMEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFD 50          
BLAST of mRNA_H-elongata_contig70098.14664.1 vs. uniprot
Match: UPI00200978D5 (DNA-directed RNA polymerase II subunit RPB2-like n=2 Tax=Mesangiospermae TaxID=1437183 RepID=UPI00200978D5)

HSP 1 Score: 61.6 bits (148), Expect = 1.000e-9
Identity = 35/52 (67.31%), Postives = 38/52 (73.08%), Query Frame = 0
Query:    7 EGGELGGYDPNEDELDPL---EEDISQEDAWVVISAYFSEKGLVRQQLDSFD 55
            + GE  GY+  ED  D     EEDI+QEDAW VISAYF EKGLVRQQLDSFD
Sbjct:   11 DNGEEHGYNNGEDYDDGEGDGEEDITQEDAWAVISAYFEEKGLVRQQLDSFD 62          
BLAST of mRNA_H-elongata_contig70098.14664.1 vs. uniprot
Match: A0A0D3BNV5_BRAOL (DNA-directed RNA polymerase subunit beta n=2 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=A0A0D3BNV5_BRAOL)

HSP 1 Score: 61.6 bits (148), Expect = 1.060e-9
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 0
Query:   15 DPNEDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD 55
            DPN  E +  EE+I+QEDAW VISAYF EKGLVRQQLDSFD
Sbjct:   10 DPNYMEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFD 50          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70098.14664.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJ47_9PHAE6.120e-1690.91DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp.... [more]
D7FHZ3_ECTSI6.160e-1690.91DNA-directed RNA polymerase subunit beta n=1 Tax=E... [more]
A0A0P0W1F5_ORYSJ3.500e-1165.38DNA-directed RNA polymerase (Fragment) n=1 Tax=Ory... [more]
A0A835YQ41_9STRA4.680e-1182.05DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A0P0W1G0_ORYSJ6.110e-1165.38DNA-directed RNA polymerase n=1 Tax=Oryza sativa s... [more]
A0A7C8ZGU7_OPUST1.830e-1083.33DNA-directed RNA polymerase n=1 Tax=Opuntia strept... [more]
A0A2U1KVS3_ARTAN2.530e-1062.26DNA-directed RNA polymerase n=1 Tax=Artemisia annu... [more]
A0A3P6C3H5_BRAOL9.820e-1075.61DNA-directed RNA polymerase (Fragment) n=2 Tax=Bra... [more]
UPI00200978D51.000e-967.31DNA-directed RNA polymerase II subunit RPB2-like n... [more]
A0A0D3BNV5_BRAOL1.060e-975.61DNA-directed RNA polymerase subunit beta n=2 Tax=B... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 14..55
NoneNo IPR availablePANTHERPTHR20856:SF23coord: 14..55

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70098contigH-elongata_contig70098:1..165 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70098.14664.1mRNA_H-elongata_contig70098.14664.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig70098 1..165 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig70098.14664.1 ID=prot_H-elongata_contig70098.14664.1|Name=mRNA_H-elongata_contig70098.14664.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
MEEVGVEGGELGGYDPNEDELDPLEEDISQEDAWVVISAYFSEKGLVRQQ
LDSFD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015712DNA-dir_RNA_pol_su2