mRNA_H-elongata_contig70098.14664.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70098.14664.1
Unique NamemRNA_H-elongata_contig70098.14664.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig70098.14664.1 vs. uniprot
Match: A0A6H5JJ47_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ47_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 6.120e-16
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:   34 GGYDPNEDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD 165
            GG   +EDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD
Sbjct:   88 GGLVDDEDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD 131
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BLAST of mRNA_H-elongata_contig70098.14664.1 vs. uniprot
Match: D7FHZ3_ECTSI (DNA-directed RNA polymerase subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ3_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 6.160e-16
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:   34 GGYDPNEDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD 165
            GG   +EDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD
Sbjct:   87 GGLMDDEDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD 130
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BLAST of mRNA_H-elongata_contig70098.14664.1 vs. uniprot
Match: A0A0P0W1F5_ORYSJ (DNA-directed RNA polymerase (Fragment) n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=A0A0P0W1F5_ORYSJ)

HSP 1 Score: 63.5 bits (153), Expect = 3.500e-11
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:   19 EGGELGGYDPNEDELD---PLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD 165
            E G +GG +  ++E D   P EE+I+QEDAW VISAYF EKGLVRQQLDSFD
Sbjct:   62 EYGAVGGEEMEDEEADGDAPDEEEITQEDAWAVISAYFEEKGLVRQQLDSFD 113
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BLAST of mRNA_H-elongata_contig70098.14664.1 vs. uniprot
Match: A0A835YQ41_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ41_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.680e-11
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:   49 NEDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD 165
            NE ELDP EE+I+QEDAW VIS+YF+EKGLVRQQLDSFD
Sbjct:    5 NEYELDPHEEEITQEDAWQVISSYFAEKGLVRQQLDSFD 43
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BLAST of mRNA_H-elongata_contig70098.14664.1 vs. uniprot
Match: A0A0P0W1G0_ORYSJ (DNA-directed RNA polymerase n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=A0A0P0W1G0_ORYSJ)

HSP 1 Score: 63.5 bits (153), Expect = 6.110e-11
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:   19 EGGELGGYDPNEDELD---PLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD 165
            E G +GG +  ++E D   P EE+I+QEDAW VISAYF EKGLVRQQLDSFD
Sbjct:   30 EYGAVGGEEMEDEEADGDAPDEEEITQEDAWAVISAYFEEKGLVRQQLDSFD 81
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BLAST of mRNA_H-elongata_contig70098.14664.1 vs. uniprot
Match: A0A7C8ZGU7_OPUST (DNA-directed RNA polymerase n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8ZGU7_OPUST)

HSP 1 Score: 60.5 bits (145), Expect = 1.830e-10
Identity = 30/36 (83.33%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   58 ELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD 165
            E D  EEDI+QEDAW VISAYF EKGLVRQQLDSFD
Sbjct:   24 EEDDEEEDITQEDAWAVISAYFEEKGLVRQQLDSFD 59
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BLAST of mRNA_H-elongata_contig70098.14664.1 vs. uniprot
Match: A0A2U1KVS3_ARTAN (DNA-directed RNA polymerase n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1KVS3_ARTAN)

HSP 1 Score: 60.1 bits (144), Expect = 2.530e-10
Identity = 33/53 (62.26%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    7 EVGVEGGELGGYDPNEDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD 165
            EV      +GG D  E+  +  EEDI+QEDAW VIS+YF EKGLVRQQLDSFD
Sbjct:   14 EVDYNNNTMGG-DEGEEYGEDEEEDITQEDAWAVISSYFEEKGLVRQQLDSFD 65
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BLAST of mRNA_H-elongata_contig70098.14664.1 vs. uniprot
Match: A0A3P6C3H5_BRAOL (DNA-directed RNA polymerase (Fragment) n=2 Tax=Brassica TaxID=3705 RepID=A0A3P6C3H5_BRAOL)

HSP 1 Score: 61.6 bits (148), Expect = 9.820e-10
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   43 DPNEDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD 165
            DPN  E +  EE+I+QEDAW VISAYF EKGLVRQQLDSFD
Sbjct:   10 DPNYMEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFD 50
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BLAST of mRNA_H-elongata_contig70098.14664.1 vs. uniprot
Match: UPI00200978D5 (DNA-directed RNA polymerase II subunit RPB2-like n=2 Tax=Mesangiospermae TaxID=1437183 RepID=UPI00200978D5)

HSP 1 Score: 61.6 bits (148), Expect = 1.000e-9
Identity = 35/52 (67.31%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:   19 EGGELGGYDPNEDELDPL---EEDISQEDAWVVISAYFSEKGLVRQQLDSFD 165
            + GE  GY+  ED  D     EEDI+QEDAW VISAYF EKGLVRQQLDSFD
Sbjct:   11 DNGEEHGYNNGEDYDDGEGDGEEDITQEDAWAVISAYFEEKGLVRQQLDSFD 62
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BLAST of mRNA_H-elongata_contig70098.14664.1 vs. uniprot
Match: A0A0D3BNV5_BRAOL (DNA-directed RNA polymerase subunit beta n=2 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=A0A0D3BNV5_BRAOL)

HSP 1 Score: 61.6 bits (148), Expect = 1.060e-9
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   43 DPNEDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD 165
            DPN  E +  EE+I+QEDAW VISAYF EKGLVRQQLDSFD
Sbjct:   10 DPNYMEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFD 50
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70098.14664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJ47_9PHAE6.120e-1690.91DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp.... [more]
D7FHZ3_ECTSI6.160e-1690.91DNA-directed RNA polymerase subunit beta n=1 Tax=E... [more]
A0A0P0W1F5_ORYSJ3.500e-1165.38DNA-directed RNA polymerase (Fragment) n=1 Tax=Ory... [more]
A0A835YQ41_9STRA4.680e-1182.05DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A0P0W1G0_ORYSJ6.110e-1165.38DNA-directed RNA polymerase n=1 Tax=Oryza sativa s... [more]
A0A7C8ZGU7_OPUST1.830e-1083.33DNA-directed RNA polymerase n=1 Tax=Opuntia strept... [more]
A0A2U1KVS3_ARTAN2.530e-1062.26DNA-directed RNA polymerase n=1 Tax=Artemisia annu... [more]
A0A3P6C3H5_BRAOL9.820e-1075.61DNA-directed RNA polymerase (Fragment) n=2 Tax=Bra... [more]
UPI00200978D51.000e-967.31DNA-directed RNA polymerase II subunit RPB2-like n... [more]
A0A0D3BNV5_BRAOL1.060e-975.61DNA-directed RNA polymerase subunit beta n=2 Tax=B... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70098contigH-elongata_contig70098:1..165 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue4.6e-13
Seed eggNOG ortholog2880.D7FHZ3
Preferred nameRPB2
KEGG rclassRC02795
KEGG koko:K03010
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko05016,ko05169,map00230,map00240,map01100,map03020,map05016,map05169
KEGG ModuleM00180
GOsGO:0000428,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005737,GO:0005829,GO:0005911,GO:0006139,GO:0006351,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010494,GO:0010605,GO:0010608,GO:0010629,GO:0014070,GO:0016070,GO:0016441,GO:0016458,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0030054,GO:0030880,GO:0031047,GO:0031050,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0035194,GO:0035195,GO:0035196,GO:0035770,GO:0036464,GO:0040029,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043331,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048519,GO:0050789,GO:0050896,GO:0051716,GO:0055029,GO:0055044,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070887,GO:0070918,GO:0071310,GO:0071359,GO:0071407,GO:0071704,GO:0090304,GO:0097159,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901698,GO:1901699,GO:1902494,GO:1990234,GO:1990904
EggNOG free text desc.DNA-directed 5'-3' RNA polymerase activity
EggNOG OGsCOG0085@1,KOG0214@2759
EC2.7.7.6
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931099.1820593-CDS-H-elongata_contig70098:0..1651622931099.1820593-CDS-H-elongata_contig70098:0..165Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70098 1..165 -
1691679697.5180614-CDS-H-elongata_contig70098:0..1651691679697.5180614-CDS-H-elongata_contig70098:0..165Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70098 1..165 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70098.14664.1prot_H-elongata_contig70098.14664.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70098 1..165 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70098.14664.1

>prot_H-elongata_contig70098.14664.1 ID=prot_H-elongata_contig70098.14664.1|Name=mRNA_H-elongata_contig70098.14664.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
MEEVGVEGGELGGYDPNEDELDPLEEDISQEDAWVVISAYFSEKGLVRQQ
LDSFD
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mRNA from alignment at H-elongata_contig70098:1..165-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70098.14664.1 ID=mRNA_H-elongata_contig70098.14664.1|Name=mRNA_H-elongata_contig70098.14664.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig70098:1..165- (Himanthalia elongata Himel1 dioecious)
ATGGAAGAGGTCGGGGTAGAAGGAGGAGAGTTGGGCGGGTACGATCCGAA
CGAGGACGAGCTGGACCCCCTAGAGGAGGACATATCTCAAGAGGACGCGT
GGGTCGTGATCAGCGCGTACTTTAGCGAGAAGGGCCTGGTCCGGCAGCAA
CTGGATTCGTTTGAT
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Coding sequence (CDS) from alignment at H-elongata_contig70098:1..165-

>mRNA_H-elongata_contig70098.14664.1 ID=mRNA_H-elongata_contig70098.14664.1|Name=mRNA_H-elongata_contig70098.14664.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig70098:1..165- (Himanthalia elongata Himel1 dioecious)
ATGGAAGAGGTCGGGGTAGAAGGAGGAGAGTTGGGCGGGTACGATCCGAA
CGAGGACGAGCTGGACCCCCTAGAGGAGGACATATCTCAAGAGGACGCGT
GGGTCGTGATCAGCGCGTACTTTAGCGAGAAGGGCCTGGTCCGGCAGCAA
CTGGATTCGTTTGATATGGAAGAGGTCGGGGTAGAAGGAGGAGAGTTGGG
CGGGTACGATCCGAACGAGGACGAGCTGGACCCCCTAGAGGAGGACATAT
CTCAAGAGGACGCGTGGGTCGTGATCAGCGCGTACTTTAGCGAGAAGGGC
CTGGTCCGGCAGCAACTGGATTCGTTTGAT
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