prot_H-elongata_contig70098.14664.1 (polypeptide) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig70098.14664.1 vs. uniprot
Match: A0A6H5JJ47_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ47_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 6.120e-16 Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 0
Query: 12 GGYDPNEDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD 55
GG +EDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD
Sbjct: 88 GGLVDDEDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD 131
BLAST of mRNA_H-elongata_contig70098.14664.1 vs. uniprot
Match: D7FHZ3_ECTSI (DNA-directed RNA polymerase subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ3_ECTSI) HSP 1 Score: 79.3 bits (194), Expect = 6.160e-16 Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 0
Query: 12 GGYDPNEDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD 55
GG +EDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD
Sbjct: 87 GGLMDDEDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD 130
BLAST of mRNA_H-elongata_contig70098.14664.1 vs. uniprot
Match: A0A0P0W1F5_ORYSJ (DNA-directed RNA polymerase (Fragment) n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=A0A0P0W1F5_ORYSJ) HSP 1 Score: 63.5 bits (153), Expect = 3.500e-11 Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 0
Query: 7 EGGELGGYDPNEDELD---PLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD 55
E G +GG + ++E D P EE+I+QEDAW VISAYF EKGLVRQQLDSFD
Sbjct: 62 EYGAVGGEEMEDEEADGDAPDEEEITQEDAWAVISAYFEEKGLVRQQLDSFD 113
BLAST of mRNA_H-elongata_contig70098.14664.1 vs. uniprot
Match: A0A835YQ41_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ41_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 4.680e-11 Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 0
Query: 17 NEDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD 55
NE ELDP EE+I+QEDAW VIS+YF+EKGLVRQQLDSFD
Sbjct: 5 NEYELDPHEEEITQEDAWQVISSYFAEKGLVRQQLDSFD 43
BLAST of mRNA_H-elongata_contig70098.14664.1 vs. uniprot
Match: A0A0P0W1G0_ORYSJ (DNA-directed RNA polymerase n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=A0A0P0W1G0_ORYSJ) HSP 1 Score: 63.5 bits (153), Expect = 6.110e-11 Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 0
Query: 7 EGGELGGYDPNEDELD---PLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD 55
E G +GG + ++E D P EE+I+QEDAW VISAYF EKGLVRQQLDSFD
Sbjct: 30 EYGAVGGEEMEDEEADGDAPDEEEITQEDAWAVISAYFEEKGLVRQQLDSFD 81
BLAST of mRNA_H-elongata_contig70098.14664.1 vs. uniprot
Match: A0A7C8ZGU7_OPUST (DNA-directed RNA polymerase n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8ZGU7_OPUST) HSP 1 Score: 60.5 bits (145), Expect = 1.830e-10 Identity = 30/36 (83.33%), Postives = 31/36 (86.11%), Query Frame = 0
Query: 20 ELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD 55
E D EEDI+QEDAW VISAYF EKGLVRQQLDSFD
Sbjct: 24 EEDDEEEDITQEDAWAVISAYFEEKGLVRQQLDSFD 59
BLAST of mRNA_H-elongata_contig70098.14664.1 vs. uniprot
Match: A0A2U1KVS3_ARTAN (DNA-directed RNA polymerase n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1KVS3_ARTAN) HSP 1 Score: 60.1 bits (144), Expect = 2.530e-10 Identity = 33/53 (62.26%), Postives = 38/53 (71.70%), Query Frame = 0
Query: 3 EVGVEGGELGGYDPNEDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD 55
EV +GG D E+ + EEDI+QEDAW VIS+YF EKGLVRQQLDSFD
Sbjct: 14 EVDYNNNTMGG-DEGEEYGEDEEEDITQEDAWAVISSYFEEKGLVRQQLDSFD 65
BLAST of mRNA_H-elongata_contig70098.14664.1 vs. uniprot
Match: A0A3P6C3H5_BRAOL (DNA-directed RNA polymerase (Fragment) n=2 Tax=Brassica TaxID=3705 RepID=A0A3P6C3H5_BRAOL) HSP 1 Score: 61.6 bits (148), Expect = 9.820e-10 Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 0
Query: 15 DPNEDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD 55
DPN E + EE+I+QEDAW VISAYF EKGLVRQQLDSFD
Sbjct: 10 DPNYMEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFD 50
BLAST of mRNA_H-elongata_contig70098.14664.1 vs. uniprot
Match: UPI00200978D5 (DNA-directed RNA polymerase II subunit RPB2-like n=2 Tax=Mesangiospermae TaxID=1437183 RepID=UPI00200978D5) HSP 1 Score: 61.6 bits (148), Expect = 1.000e-9 Identity = 35/52 (67.31%), Postives = 38/52 (73.08%), Query Frame = 0
Query: 7 EGGELGGYDPNEDELDPL---EEDISQEDAWVVISAYFSEKGLVRQQLDSFD 55
+ GE GY+ ED D EEDI+QEDAW VISAYF EKGLVRQQLDSFD
Sbjct: 11 DNGEEHGYNNGEDYDDGEGDGEEDITQEDAWAVISAYFEEKGLVRQQLDSFD 62
BLAST of mRNA_H-elongata_contig70098.14664.1 vs. uniprot
Match: A0A0D3BNV5_BRAOL (DNA-directed RNA polymerase subunit beta n=2 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=A0A0D3BNV5_BRAOL) HSP 1 Score: 61.6 bits (148), Expect = 1.060e-9 Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 0
Query: 15 DPNEDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFD 55
DPN E + EE+I+QEDAW VISAYF EKGLVRQQLDSFD
Sbjct: 10 DPNYMEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFD 50 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70098.14664.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_H-elongata_contig70098.14664.1 ID=prot_H-elongata_contig70098.14664.1|Name=mRNA_H-elongata_contig70098.14664.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bpback to top Annotated Terms
The following terms have been associated with this polypeptide:
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